CBE Database Visualizer

Select Ligand, Chain or interface (right frame) to visualize contacts of 3kfj

(Residues within 4 Angstroms of the ligand are orange)


Visualisation option: mouse right button

Entities Contact Visualizer for 3kfj

Crystal Structure of the Grb2 SH2 Domain in Complex with a Flexible Ac-pY-E-N-NH2 Tripeptide Mimic
(X-RAY DIFFRACTION)



Contacts (< 4A) Between Entities (1 Chain(s) & 4 Ligand(s)) :

All Entities CHAIN_A_1
CL_A_3 CL_A_3/CHAIN_A_1
CL_A_4 CL_A_4/CHAIN_A_1
MG_A_5 MG_A_5/CHAIN_A_1
YEN_A_2 YEN_A_2/CHAIN_A_1



Entities Features:

TypeWeightLengthInfo
CHAIN_A_1 polymer 13758.683 100 Growth factor receptor-bound protein 2
CL_A_3 non-polymer 35.453 . CHLORIDE ION
CL_A_4 non-polymer 35.453 . CHLORIDE ION
MG_A_5 non-polymer 24.305 . MAGNESIUM ION
YEN_A_2 non-polymer 559.469 . N-{(2S)-4-(METHYLAMINO)-4-OXO-2-[4-(PHOSPHONOOXY)BENZYL]BUTANOYL}-L-ALPHA-GLUTAMYL-L-ASPARTAMIDE


Additional CBE information:

The CBE (Contacts Between Entities) database is built from the mmCIF database.
All the molecules (entities) were extracted of the structure.
For each main chain (protein chain), amino acid in contact with ligand(s) have been obtained.
The CBE is accessible from the PDB entries.
The ligand code is :XXX_Y_Z were:
XXX = molecule short name
Y = Chain in pdb file
Z = Entity Number

[3kfj.cbe]
[3kfj.fasta)]
[3kfj.pdb)]