CBE Database Visualizer

Select Ligand, Chain or interface (right frame) to visualize contacts of 2v92

(Residues within 4 Angstroms of the ligand are orange)


Visualisation option: mouse right button

Entities Contact Visualizer for 2v92

CRYSTAL STRUCTURE OF THE REGULATORY FRAGMENT OF MAMMALIAN AMPK IN COMPLEXES WITH ATP-AMP
(X-RAY DIFFRACTION)



Contacts (< 4A) Between Entities (3 Chain(s) & 3 Ligand(s)) :

All Entities CHAIN_A_1 CHAIN_B_2 CHAIN_E_3
AMP_E_6 No contact No contact AMP_E_6/CHAIN_E_3
ATP_E_4 No contact No contact ATP_E_4/CHAIN_E_3
ATP_E_5 No contact No contact ATP_E_5/CHAIN_E_3



Entities Features:

TypeWeightLengthInfo
AMP_E_6 non-polymer 347.224 . ADENOSINE MONOPHOSPHATE
ATP_E_4 non-polymer 507.183 . ADENOSINE-5'-TRIPHOSPHATE
ATP_E_5 non-polymer 507.183 . ADENOSINE-5'-TRIPHOSPHATE
CHAIN_A_1 polymer 17635.918 156 5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1
CHAIN_B_2 polymer 10040.894 83 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2
CHAIN_E_3 polymer 37434.473 304 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1


Additional CBE information:

The CBE (Contacts Between Entities) database is built from the mmCIF database.
All the molecules (entities) were extracted of the structure.
For each main chain (protein chain), amino acid in contact with ligand(s) have been obtained.
The CBE is accessible from the PDB entries.
The ligand code is :XXX_Y_Z were:
XXX = molecule short name
Y = Chain in pdb file
Z = Entity Number

[2v92.cbe]
[2v92.fasta)]
[2v92.pdb)]