CBE Database Visualizer

Select Ligand, Chain or interface (right frame) to visualize contacts of 3zet

(Residues within 4 Angstroms of the ligand are orange)


Visualisation option: mouse right button

Entities Contact Visualizer for 3zet

Structure of a Salmonella typhimurium YgjD-YeaZ heterodimer
(X-RAY DIFFRACTION)



Contacts (< 4A) Between Entities (2 Chain(s) & 3 Ligand(s)) :

All Entities CHAIN_A_1 CHAIN_B_2
AMP_B_4 No contact AMP_B_4/CHAIN_B_2
CD_B_5 No contact CD_B_5/CHAIN_B_2
TAM_A_3 TAM_A_3/CHAIN_A_1 No contact



Entities Features:

TypeWeightLengthInfo
AMP_B_4 non-polymer 347.224 . ADENOSINE MONOPHOSPHATE
CD_B_5 non-polymer 112.410 . CADMIUM ION
CHAIN_A_1 polymer 24508.053 229 PUTATIVE M22 PEPTIDASE YEAZ
CHAIN_B_2 polymer 35981.617 337 PROBABLE TRNA THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN GCP
TAM_A_3 non-polymer 163.216 . TRIS(HYDROXYETHYL)AMINOMETHANE


Additional CBE information:

The CBE (Contacts Between Entities) database is built from the mmCIF database.
All the molecules (entities) were extracted of the structure.
For each main chain (protein chain), amino acid in contact with ligand(s) have been obtained.
The CBE is accessible from the PDB entries.
The ligand code is :XXX_Y_Z were:
XXX = molecule short name
Y = Chain in pdb file
Z = Entity Number

[3zet.cbe]
[3zet.fasta)]
[3zet.pdb)]