CBE Database Visualizer

Select Ligand, Chain or interface (right frame) to visualize contacts of 4mva

(Residues within 4 Angstroms of the ligand are orange)


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Entities Contact Visualizer for 4mva

1.43 Angstrom Resolution Crystal Structure of Triosephosphate Isomerase (tpiA) from Escherichia coli in Complex with Acetyl Phosphate.
(X-RAY DIFFRACTION)



Contacts (< 4A) Between Entities (2 Chain(s) & 6 Ligand(s)) :

All Entities CHAIN_A_1 CHAIN_B_2
CL_A_3 CL_A_3/CHAIN_A_1 No contact
EDO_A_6 EDO_A_6/CHAIN_A_1 No contact
EDO_B_8 No contact EDO_B_8/CHAIN_B_2
PEG_B_9 No contact PEG_B_9/CHAIN_B_2
PO4_A_5 PO4_A_5/CHAIN_A_1 PO4_A_5/CHAIN_B_2
UVW_A_4 UVW_A_4/CHAIN_A_1 No contact



Entities Features:

TypeWeightLengthInfo
CHAIN_A_1 polymer 29747.924 255 Triosephosphate isomerase
CHAIN_B_2 polymer 29747.924 254 Triosephosphate isomerase
CL_A_3 non-polymer 35.453 . CHLORIDE ION
EDO_A_6 non-polymer 62.068 . 1,2-ETHANEDIOL
EDO_B_8 non-polymer 62.068 . 1,2-ETHANEDIOL
PEG_B_9 non-polymer 106.121 . DI(HYDROXYETHYL)ETHER
PO4_A_5 non-polymer 94.971 . PHOSPHATE ION
UVW_A_4 non-polymer 140.032 . ACETYLPHOSPHATE


Additional CBE information:

The CBE (Contacts Between Entities) database is built from the mmCIF database.
All the molecules (entities) were extracted of the structure.
For each main chain (protein chain), amino acid in contact with ligand(s) have been obtained.
The CBE is accessible from the PDB entries.
The ligand code is :XXX_Y_Z were:
XXX = molecule short name
Y = Chain in pdb file
Z = Entity Number

[4mva.cbe]
[4mva.fasta)]
[4mva.pdb)]