CBE Database Visualizer

Select Ligand, Chain or interface (right frame) to visualize contacts of 3q88

(Residues within 4 Angstroms of the ligand are orange)


Visualisation option: mouse right button

Entities Contact Visualizer for 3q88

Glucose-6-phosphate isomerase from Francisella tularensis complexed with ribose 1,5-bisphosphate.
(X-RAY DIFFRACTION)



Contacts (< 4A) Between Entities (1 Chain(s) & 6 Ligand(s)) :

All Entities CHAIN_A_1
CA_A_7 CA_A_7/CHAIN_A_1
IPA_A_6 IPA_A_6/CHAIN_A_1
MES_A_3 MES_A_3/CHAIN_A_1
MES_A_4 MES_A_4/CHAIN_A_1
PO4_A_5 PO4_A_5/CHAIN_A_1
RI2_A_2 RI2_A_2/CHAIN_A_1



Entities Features:

TypeWeightLengthInfo
CA_A_7 non-polymer 40.080 . CALCIUM ION
CHAIN_A_1 polymer 61467.113 541 Glucose-6-phosphate isomerase
IPA_A_6 non-polymer 60.096 . ISOPROPYL ALCOHOL
MES_A_3 non-polymer 195.233 . 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
MES_A_4 non-polymer 195.233 . 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
PO4_A_5 non-polymer 94.971 . PHOSPHATE ION
RI2_A_2 non-polymer 310.091 . 1,5-DI-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE


Additional CBE information:

The CBE (Contacts Between Entities) database is built from the mmCIF database.
All the molecules (entities) were extracted of the structure.
For each main chain (protein chain), amino acid in contact with ligand(s) have been obtained.
The CBE is accessible from the PDB entries.
The ligand code is :XXX_Y_Z were:
XXX = molecule short name
Y = Chain in pdb file
Z = Entity Number

[3q88.cbe]
[3q88.fasta)]
[3q88.pdb)]