CBE Database Visualizer

Select Ligand, Chain or interface (right frame) to visualize contacts of 2gu6

(Residues within 4 Angstroms of the ligand are orange)

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Entities Contact Visualizer for 2gu6

E. coli methionine aminopeptidase in complex with NleP, 1

Contacts (< 4A) Between Entities (2 Chain(s) & 8 Ligand(s)) :

All Entities CHAIN_A_1 CHAIN_B_2
MN_A_3 MN_A_3/CHAIN_A_1 No contact
MN_A_4 MN_A_4/CHAIN_A_1 No contact
MN_B_5 No contact MN_B_5/CHAIN_B_2
MN_B_6 No contact MN_B_6/CHAIN_B_2
NA_A_7 NA_A_7/CHAIN_A_1 No contact
NA_B_8 No contact NA_B_8/CHAIN_B_2
NLP_A_9 NLP_A_9/CHAIN_A_1 No contact
NLP_B_10 No contact NLP_B_10/CHAIN_B_2

Entities Features:

CHAIN_A_1 polymer 29213.756 261 Methionine aminopeptidase
CHAIN_B_2 polymer 29213.756 261 Methionine aminopeptidase
MN_A_3 non-polymer 54.938 . MANGANESE (II) ION
MN_A_4 non-polymer 54.938 . MANGANESE (II) ION
MN_B_5 non-polymer 54.938 . MANGANESE (II) ION
MN_B_6 non-polymer 54.938 . MANGANESE (II) ION
NA_A_7 non-polymer 22.990 . SODIUM ION
NA_B_8 non-polymer 22.990 . SODIUM ION
NLP_A_9 non-polymer 167.144 . (1-AMINO-PENTYL)-PHOSPHONIC ACID
NLP_B_10 non-polymer 167.144 . (1-AMINO-PENTYL)-PHOSPHONIC ACID

Additional CBE information:

The CBE (Contacts Between Entities) database is built from the mmCIF database.
All the molecules (entities) were extracted of the structure.
For each main chain (protein chain), amino acid in contact with ligand(s) have been obtained.
The CBE is accessible from the PDB entries.
The ligand code is :XXX_Y_Z were:
XXX = molecule short name
Y = Chain in pdb file
Z = Entity Number