CBE Database Visualizer

Select Ligand, Chain or interface (right frame) to visualize contacts of 4z7m

(Residues within 4 Angstroms of the ligand are orange)


Visualisation option: mouse right button

Entities Contact Visualizer for 4z7m

Novel Inhibitors of Bacterial Methionine Aminopeptidase with Broad-Spectrum Biochemical Activity
(X-RAY DIFFRACTION)



Contacts (< 4A) Between Entities (2 Chain(s) & 4 Ligand(s)) :

All Entities CHAIN_A_1 CHAIN_B_2
4L9_A_4 4L9_A_4/CHAIN_A_1 No contact
4L9_B_6 No contact 4L9_B_6/CHAIN_B_2
MN_A_3 MN_A_3/CHAIN_A_1 No contact
MN_B_5 No contact MN_B_5/CHAIN_B_2



Entities Features:

TypeWeightLengthInfo
4L9_A_4 non-polymer 441.470 . N~2~-[(3,5-difluorophenyl)acetyl]-N-[(3S,7R)-1-methyl-2-oxo-7-phenyl-2,3,4,7-tetrahydro-1H-azepin-3-yl]-L-alaninamide
4L9_B_6 non-polymer 441.470 . N~2~-[(3,5-difluorophenyl)acetyl]-N-[(3S,7R)-1-methyl-2-oxo-7-phenyl-2,3,4,7-tetrahydro-1H-azepin-3-yl]-L-alaninamide
CHAIN_A_1 polymer 28995.443 261 Methionine aminopeptidase
CHAIN_B_2 polymer 28995.443 261 Methionine aminopeptidase
MN_A_3 non-polymer 54.938 . MANGANESE (II) ION
MN_B_5 non-polymer 54.938 . MANGANESE (II) ION


Additional CBE information:

The CBE (Contacts Between Entities) database is built from the mmCIF database.
All the molecules (entities) were extracted of the structure.
For each main chain (protein chain), amino acid in contact with ligand(s) have been obtained.
The CBE is accessible from the PDB entries.
The ligand code is :XXX_Y_Z were:
XXX = molecule short name
Y = Chain in pdb file
Z = Entity Number

[4z7m.cbe]
[4z7m.fasta)]
[4z7m.pdb)]