CBE Database Visualizer

Select Ligand, Chain or interface (right frame) to visualize contacts of 5hw0

(Residues within 4 Angstroms of the ligand are orange)


Visualisation option: mouse right button

Entities Contact Visualizer for 5hw0

Erwinia chrysanthemi L-asparaginase + Glutamic acid
(X-RAY DIFFRACTION)



Contacts (< 4A) Between Entities (4 Chain(s) & 4 Ligand(s)) :

All Entities CHAIN_A_1 CHAIN_B_2 CHAIN_C_3 CHAIN_D_4
GLU_A_5 GLU_A_5/CHAIN_A_1 GLU_A_5/CHAIN_B_2 No contact No contact
GLU_B_6 GLU_B_6/CHAIN_A_1 GLU_B_6/CHAIN_B_2 No contact No contact
GLU_C_7 No contact No contact GLU_C_7/CHAIN_C_3 GLU_C_7/CHAIN_D_4
GLU_D_8 No contact No contact GLU_D_8/CHAIN_C_3 GLU_D_8/CHAIN_D_4



Entities Features:

TypeWeightLengthInfo
CHAIN_A_1 polymer 35293.277 328 L-asparaginase
CHAIN_B_2 polymer 35293.277 328 L-asparaginase
CHAIN_C_3 polymer 35293.277 328 L-asparaginase
CHAIN_D_4 polymer 35293.277 328 L-asparaginase
GLU_A_5 non-polymer 147.129 . GLUTAMIC ACID
GLU_B_6 non-polymer 147.129 . GLUTAMIC ACID
GLU_C_7 non-polymer 147.129 . GLUTAMIC ACID
GLU_D_8 non-polymer 147.129 . GLUTAMIC ACID


Additional CBE information:

The CBE (Contacts Between Entities) database is built from the mmCIF database.
All the molecules (entities) were extracted of the structure.
For each main chain (protein chain), amino acid in contact with ligand(s) have been obtained.
The CBE is accessible from the PDB entries.
The ligand code is :XXX_Y_Z were:
XXX = molecule short name
Y = Chain in pdb file
Z = Entity Number

[5hw0.cbe]
[5hw0.fasta)]
[5hw0.pdb)]