CBE Database Visualizer

Select Ligand, Chain or interface (right frame) to visualize contacts of 2v7y

(Residues within 4 Angstroms of the ligand are orange)


Visualisation option: mouse right button

Entities Contact Visualizer for 2v7y

CRYSTAL STRUCTURE OF THE MOLECULAR CHAPERONE DNAK FROM GEOBACILLUS KAUSTOPHILUS HTA426 IN POST-ATP HYDROLYSIS STATE
(X-RAY DIFFRACTION)



Contacts (< 4A) Between Entities (1 Chain(s) & 3 Ligand(s)) :

All Entities CHAIN_A_1
ADP_A_2 ADP_A_2/CHAIN_A_1
MG_A_4 No contact
PO4_A_3 PO4_A_3/CHAIN_A_1



Entities Features:

TypeWeightLengthInfo
ADP_A_2 non-polymer 427.203 . ADENOSINE-5'-DIPHOSPHATE
CHAIN_A_1 polymer 55125.797 504 CHAPERONE PROTEIN DNAK
MG_A_4 non-polymer 24.305 . MAGNESIUM ION
PO4_A_3 non-polymer 94.971 . PHOSPHATE ION


Additional CBE information:

The CBE (Contacts Between Entities) database is built from the mmCIF database.
All the molecules (entities) were extracted of the structure.
For each main chain (protein chain), amino acid in contact with ligand(s) have been obtained.
The CBE is accessible from the PDB entries.
The ligand code is :XXX_Y_Z were:
XXX = molecule short name
Y = Chain in pdb file
Z = Entity Number

[2v7y.cbe]
[2v7y.fasta)]
[2v7y.pdb)]