CBE Database Visualizer

Select Ligand, Chain or interface (right frame) to visualize contacts of 2j75

(Residues within 4 Angstroms of the ligand are orange)


Visualisation option: mouse right button

Entities Contact Visualizer for 2j75

BETA-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH NOEUROMYCIN
(X-RAY DIFFRACTION)



Contacts (< 4A) Between Entities (2 Chain(s) & 5 Ligand(s)) :

All Entities CHAIN_A_1 CHAIN_B_2
ACT_A_3 ACT_A_3/CHAIN_A_1 No contact
ACT_A_5 ACT_A_5/CHAIN_A_1 No contact
CA_B_7 No contact CA_B_7/CHAIN_B_2
NOY_A_4 NOY_A_4/CHAIN_A_1 No contact
NOY_B_6 No contact NOY_B_6/CHAIN_B_2



Entities Features:

TypeWeightLengthInfo
ACT_A_3 non-polymer 59.045 . ACETATE ION
ACT_A_5 non-polymer 59.045 . ACETATE ION
CA_B_7 non-polymer 40.080 . CALCIUM ION
CHAIN_A_1 polymer 53941.297 443 BETA-GLUCOSIDASE A
CHAIN_B_2 polymer 53941.297 442 BETA-GLUCOSIDASE A
NOY_A_4 non-polymer 163.173 . (2R,3S,4R,5R)-5-(HYDROXYMETHYL)PIPERIDINE-2,3,4-TRIOL
NOY_B_6 non-polymer 163.173 . (2R,3S,4R,5R)-5-(HYDROXYMETHYL)PIPERIDINE-2,3,4-TRIOL


Additional CBE information:

The CBE (Contacts Between Entities) database is built from the mmCIF database.
All the molecules (entities) were extracted of the structure.
For each main chain (protein chain), amino acid in contact with ligand(s) have been obtained.
The CBE is accessible from the PDB entries.
The ligand code is :XXX_Y_Z were:
XXX = molecule short name
Y = Chain in pdb file
Z = Entity Number

[2j75.cbe]
[2j75.fasta)]
[2j75.pdb)]