CBE Database Visualizer

Select Ligand, Chain or interface (right frame) to visualize contacts of 3vax

(Residues within 4 Angstroms of the ligand are orange)


Visualisation option: mouse right button

Entities Contact Visualizer for 3vax

Crytal structure of DndA from streptomyces lividans
(X-RAY DIFFRACTION)



Contacts (< 4A) Between Entities (2 Chain(s) & 2 Ligand(s)) :

No contact



Entities Features:

TypeWeightLengthInfo
CHAIN_A_1 polymer 43286.320 358 Putative uncharacterized protein dndA
CHAIN_B_2 polymer 43286.320 358 Putative uncharacterized protein dndA
PLP_A_3 non-polymer 247.144 . PYRIDOXAL-5'-PHOSPHATE
PLP_B_4 non-polymer 247.144 . PYRIDOXAL-5'-PHOSPHATE


Additional CBE information:

The CBE (Contacts Between Entities) database is built from the mmCIF database.
All the molecules (entities) were extracted of the structure.
For each main chain (protein chain), amino acid in contact with ligand(s) have been obtained.
The CBE is accessible from the PDB entries.
The ligand code is :XXX_Y_Z were:
XXX = molecule short name
Y = Chain in pdb file
Z = Entity Number

[3vax.cbe]
[3vax.fasta)]
[3vax.pdb)]