@TOME V2.3
(Mar 2018)

Ref. - - Doc.
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3D Common Core:

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Complexes Modeling
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Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : GTR10_HUMAN: (2018-03-06 )
MGHSPPVLPLCASVSLLGGLTFGYELAVISGALLPLQLDFGLSCLEQEFLVGSLLLGALLASLVGGFLIDCYGRKQAILGSNLVLLAGSLTLGLAGSLAWLVLGRAVVGFAISLSSMACCIYVSELVGPRQRGVLVSLYEAGITVGILLSYALNYALAGTPWGWRHMFGWATAPAVLQSLSLLFLPAGTDETATHKDLIPLQGGEAPKLGPGRPRYSFLDLFRARDNMRGRTTVGLGLVLFQQLTGQPNVLCYASTIFSSVGFHGGSSAVLASVGLGAVKVAATLTAMGLVDRAGRRALLLAGCALMALSVSGIGLVSFAVPMDSGPSCLAVPNATGQTGLPGDSGLLQDSSLPPIPRTNEDQREPILSTAKKTKPHPRSGDPSAPPRLALSSALPGPPLPARGHALLRWTALLCLMVFVSAFSFGFGPVTWLVLSEIYPVEIRGRAFAFCNSFNWAANLFISLSFLDLIGTIGLSWTFLLYGLTAVLGLGFIYLFVPETKGQSLAEIDQQFQKRRFTLSFGHRQNSTGIPYSRIEISAAS

Atome Classification :

(12 SA) .........10........20........30........40-------..--------------.--------------....--------------.--------.50....--------....60........70.......-.80.......-----------------.90..------------------.---.---....100.......110.......120.......130.......140.......150.....-...---.-160-----..----.......170.......180....-------..---------.190...------------..--------..200.-----------.--..-...210...---..----.-.220.-......-----------230---.....-..-------.240..----.....250.......260.........270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460......------.------470.......480.......490.......500.......510.......520.......530.......540
(Atome) (Ident) (Tito) (Num) (QMean) (Ligand) (Uniprot) MGHSPPVLPLCASVSLLGGLTFGYELAVISGALLPLQLDF--------GL--------------S--------------CLEQ--------------E--------FLVGSLL--------LGALLASLVGGFLIDCYGRKQAI-LGSNLVLLAG-----------------SLTLG------------------L---A---GSLAWLVLGRAVVGFAISLSSMACCIYVSELVGPRQRGVLVSLYEAGITVGILLS--YALNY-ALA---G-T-------PW----GWRHMFGWATAPAVLQSLSLLFLP-------AG---------TDETATH------------KD--------LIPLQG-----------G--EA-PKLGPGRPR---YS----F-LDLFR-ARDNMR-----------GR----TTVGL-GL-------VLFQQL----TGQPNVLCYASTIFSS--VGFHGGSSAVLASVGLGAVKVAATLTAMGLVDRAGRRALLLAGCALMALSVSGIGLVSFAVPMDSGPSCLAVPNATGQTGLPGDSGLLQDSSLPPIPRTNEDQREPILSTAKKTKPHPRSGDPSAPPRLALSSALPGPPLPARGHALLRWTALLCLMVFVSAFSFGFGPVTWLVLSEIYPVEIRGRAFAFCNSFNWAANLFISLSFLD------L------IGTIGLSWTFLLYGLTAVLGLGFIYLFVPETKGQSLAEIDQQFQKRRFTLSFGHRQNSTGIPYSRIEISAAS
42 Fugue 84.9130%-117 - C2 - - 4GC0 XYLE_ECOLI A:[5-479] --YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESA--------------A--------------NSLL--------------G--------FCVASAL--------IGCIIGGALGGYCSNRFGRRDSL-KIAAVLFFIS-----------------GVGSAWPELGFTSINPDNTVPVYL---A---GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLV--YCVNY-FIARSGD-A-------SWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSR---------GKQEQAE------------GI--------LRKIMG-----------N--TL-ATQAVQEIK---HS----L-DHGRK-TGGRLL-----------MFGVGVIVIGV-ML-------SIFQQF----VGINVVLYYAPEVFKT--LGA-STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-------------------------------------------------------------------------------------GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL------VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE----------------------------
21 HHSearch 83.8231%-111 - C2 - - 4GC0 XYLE_ECOLI A:[14-478] -----------TLVATLGGLLFGYDTAVISGTVESLNTVF--------VAPQNLSESA------A--------------NSLL--------------G--------FCVASAL--------IGCIIGGALGGYCSNRFGRRDSL-KIAAVLFFIS-----------------GVGSAWPELGFTSINPDNTVPVYL---A---GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLV--YCVNY-FIA---R-SGDASWLNTD----GWRYMFASECIPALLFLMLLYTVP-------ES---------PRWLMSR------------GK--------QEQAEG-----------ILRKIMGNTLATQAV---QE----I-KHSLDHGRKTGG-----------RL----LMFGV-GVIVIGVMLSIFQQF----VGINVVLYYAPEVFKT--LGAST-DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA----------------------------------------------------------------------------------P--G-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPM------MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALW-----------------------------
22 HHSearch 82.4331%-113 - C2 - - 4GBY XYLE_ECOLI A:[14-478] -----------TLVATLGGLLFGYDTAVISGTVESLNTVF--------VAPQNLSESA------A--------------NSLL--------------G--------FCVASAL--------IGCIIGGALGGYCSNRFGRRDSL-KIAAVLFFIS-----------------GVGSAWPELGFTSINPDNTVPVYL---A---GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLV--YCVNY-FIA---R-SGDASWLNTD----GWRYMFASECIPALLFLMLLYTVP-------ES---------PRWLMSR------------GK--------QEQAEG-----------ILRKIMGNTLATQAV---QE----I-KHSLDHGRKTGG-----------RL----LMFGV-GVIVIGVMLSIFQQF----VGINVVLYYAPEVFKT--LGAST-DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA----------------------------------------------------------------------------------P--G-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPM------MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALW-----------------------------
24 HHSearch 76.7426%-116 - C2 - - 5EQG GTR1_HUMAN A:[12-455] -------LMLAVGGAVLGSLQFGYNTGVINAPQKVIEEFY--------NQ--------------TWVHRYGESILPTTLTTLW--------------S--------LSVAIFS--------VGGMIGSFSVGLFVNRFGRRNSM-LMMNLLAFVS-----------------AVLMG------------------F---SKLGKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIA--QVFGL-DSI---MGN-------KD----LWPLLLSIIFIPALLQCIVLPFCP-------ES---------PRFLLINRNEENRAK----SV--------LKKLRG-----------T--ADVTHDLQEMKEESRQM----MREKKVT-ILELFR-----------SP----AYRQPILI-------AVVLQLSQQLSGINAVFYYSTSIFEK--AGVQ---QPVYATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAILMTIALALLE-Q-----------------------------------------------------------------------------LPWM--SYL-SIVAIFGFVAFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWTSNFIVGMCFQY------V------EQLCGPY-VFIIFTVLLVLFFIFTYFKVPET-----------------------------------------
25 HHSearch 76.4624%-103 - C2 - - 4ZW9 GTR3_HUMAN A:[32-489] -------LIFAITVATIGSFQFGYNTGVINAPEKIIKEFI--------TKTLTDKGNAPPSEVLL--------------TSLW--------------S--------LSVAIFS--------VGGMIGSFSVGLFVNRFGRRNSM-LIVNLLAVTG-----------------GCFMGLCK---------------V---A---KSVEMLILGRLVIGLFCGLCTGFVPMYIGEISPTALRGAFGTLNQLGIVVGILVA--QIFGL-EFILG-S-E--------E----LWPLLLGFTILPAILQSAALPFCP-------ES---------PRFLLIN------------RKEEENAKQILQRLWG-----------T--QDVSQDIQEMKD---ESARMSQ-EKQVT-VLELFR-----------VS----SYRQP-III------SIVLQL----SQQLSGINAVFYYSTGIFKDAGV-QEPIYATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAFCSTLMTVSLLLKD-N-----------------------------------------------------------------------------YNGM--SFVCI-GAILVFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLLFPS------A------AHYLGAYV-FIIFTGFLITFLAFTFFKVPETRGRTFEDITRAFEG---------------------------
6 PsiBlast_PDB 61.2327%-105 - C2 - - 4GC0 XYLE_ECOLI A:[16-360] -------------VATLGGLLFGYDTAVISGTVESLNTVF--------VA--------------P--------------QNLS--------------ESAANSLLGFCVASAL--------IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVY------------------L---A---GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLV--YCVNY-FIA---R-SGDA----SWLNTDGWRYMFASECIPALLFLMLLYTVP-------ES---------PRWLMSR------------GK--------QEQAEG-----------I--LR-KIMGNTLAT---QA----V-QEIKH-SLDHGRKTGGRLLMFGVGV----IVIGV-ML-------SIFQQF----VGINVVLYYAPEVFKT--LG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5 PsiBlast_PDB 60.1927%-108 - C2 - - 4GBZ XYLE_ECOLI A:[16-360] -------------VATLGGLLFGYDTAVISGTVESLNTVF--------VA--------------P--------------QNLS--------------ESAANSLLGFCVASAL--------IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVY------------------L---A---GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLV--YCVNY-FIA---R-SGDA----SWLNTDGWRYMFASECIPALLFLMLLYTVP-------ES---------PRWLMSR------------GK--------QEQAEG-----------I--LR-KIMGNTLAT---QA----V-QEIKH-SLDHGRKTGGRLLMFGVGV----IVIGV-ML-------SIFQQF----VGINVVLYYAPEVFKT--LG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11 PsiBlast_PDB 60.0326% -71 - C2 - - 5EQG GTR1_HUMAN A:[19-345] --------------AVLGSLQFGYNTGVINAPQKVIEEFY--------NQ--------------T--------------WVHRYGESILPTTLTTLWS--------LSVAIFS--------VGGMIGSFSVGLFVNRFGRRNSM-LMMNLLAFVS-----------------AVLMGFSK---------------L---G---KSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIA--QVFGLDSIM---G-N-------KD----LWPLLLSIIFIPALLQCIVLPFCP-------ESPRFLLINR-NEENRAK------------SV--------LKKLRGTADVTHDLQEMK--EE-SRQMMREKK---VT----I-LELFR-S-PAYR-----------QP----ILIAV-VL-------QLSQQL----SGINAVFYYSTSIFEK--AGVQ---QPVYATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12 PsiBlast_PDB 59.9826% -70 - C2 - - 5EQH GTR1_HUMAN A:[19-345] --------------AVLGSLQFGYNTGVINAPQKVIEEFY--------NQ--------------T--------------WVHRYGESILPTTLTTLWS--------LSVAIFS--------VGGMIGSFSVGLFVNRFGRRNSM-LMMNLLAFVS-----------------AVLMGFSK---------------L---G---KSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIA--QVFGLDSIM---G-N-------KD----LWPLLLSIIFIPALLQCIVLPFCP-------ESPRFLLINR-NEENRAK------------SV--------LKKLRGTADVTHDLQEMK--EE-SRQMMREKK---VT----I-LELFR-S-PAYR-----------QP----ILIAV-VL-------QLSQQL----SGINAVFYYSTSIFEK--AGVQ---QPVYATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4 PsiBlast_PDB 59.9427%-105 - C2 - - 4GBY XYLE_ECOLI A:[16-360] -------------VATLGGLLFGYDTAVISGTVESLNTVF--------VA--------------P--------------QNLS--------------ESAANSLLGFCVASAL--------IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVY------------------L---A---GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLV--YCVNY-FIA---R-SGDA----SWLNTDGWRYMFASECIPALLFLMLLYTVP-------ES---------PRWLMSR------------GK--------QEQAEG-----------I--LR-KIMGNTLAT---QA----V-QEIKH-SLDHGRKTGGRLLMFGVGV----IVIGV-ML-------SIFQQF----VGINVVLYYAPEVFKT--LG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13 PsiBlast_PDB 58.8426% -71 - C2 - - 5EQI GTR1_HUMAN A:[19-345] --------------AVLGSLQFGYNTGVINAPQKVIEEFY--------NQ--------------T--------------WVHRYGESILPTTLTTLWS--------LSVAIFS--------VGGMIGSFSVGLFVNRFGRRNSM-LMMNLLAFVS-----------------AVLMGFSK---------------L---G---KSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIA--QVFGLDSIM---G-N-------KD----LWPLLLSIIFIPALLQCIVLPFCP-------ESPRFLLINR-NEENRAK------------SV--------LKKLRGTADVTHDLQEMK--EE-SRQMMREKK---VT----I-LELFR-S-PAYR-----------QP----ILIAV-VL-------QLSQQL----SGINAVFYYSTSIFEK--AGVQ---QPVYATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7 PsiBlast_PDB 57.6927% -61 - C2 - - 4ZW9 GTR3_HUMAN A:[30-366] -----PALIFAITVATIGSFQFGYNTGVINAPEKIIK-EF--------IT--------------K--------------TLTDKGNAPPS-------E--------VLLTSLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSM-LIVNLLAVTG-----------------GCFMG------------------LCKVA---KSVEMLILGRLVIGLFCGLCTGFVPMYIGEISPTALRGAFGTLNQLGIVVGILVAQIFGLEF-IL----G-S-------EE----LWPLLLGFTILPAILQSAALPFCP-------ESPRFLLINRKEEENAKQILQRLWGTQDVSQD--------IQEMKD--------------ES-ARMSQEK-Q---VT----V-LELFR-V-SSYR-----------QP----IIISI-VL-------QLSQQL----SGINAVFYYSTGIFKD--AGVQ---EPIYATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Add PDB User Result:

(3 SA) .........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540
(Atome) (Ident) (Tito) (Num) (QMean) (Ligand) (Uniprot) MGHSPPVLPLCASVSLLGGLTFGYELAVISGALLPLQLDFGLSCLEQEFLVGSLLLGALLASLVGGFLIDCYGRKQAILGSNLVLLAGSLTLGLAGSLAWLVLGRAVVGFAISLSSMACCIYVSELVGPRQRGVLVSLYEAGITVGILLSYALNYALAGTPWGWRHMFGWATAPAVLQSLSLLFLPAGTDETATHKDLIPLQGGEAPKLGPGRPRYSFLDLFRARDNMRGRTTVGLGLVLFQQLTGQPNVLCYASTIFSSVGFHGGSSAVLASVGLGAVKVAATLTAMGLVDRAGRRALLLAGCALMALSVSGIGLVSFAVPMDSGPSCLAVPNATGQTGLPGDSGLLQDSSLPPIPRTNEDQREPILSTAKKTKPHPRSGDPSAPPRLALSSALPGPPLPARGHALLRWTALLCLMVFVSAFSFGFGPVTWLVLSEIYPVEIRGRAFAFCNSFNWAANLFISLSFLDLIGTIGLSWTFLLYGLTAVLGLGFIYLFVPETKGQSLAEIDQQFQKRRFTLSFGHRQNSTGIPYSRIEISAAS
52 -100%-159 - C2 - - U052 - A:[5-500] ----PPVLPLCASVSLLGGLTFGYELAVISGALLPLQLDFGLSCLEQEFLVGSLLLGALLASLVGGFLIDCYGRKQAILGSNLVLLAGSLTLGLAGSLAWLVLGRAVVGFAISLSSMACCIYVSELVGPRQRGVLVSLYEAGITVGILLSYALNYALAGTPWGWRHMFGWATAPAVLQSLSLLFLPAGTDETATHKDLIPLQGGEAPKLGPGRPRYSFLDLFRAR-NMRGRTTVGLGLVLFQQLTGQPNVLCYASTIFSSVGFH---SAVLASVGLGAVKVAATLTAMGLVDRAGRRALLLAGCALMALSVSGIGLVSFAVPM---------------------------------------------------------------------------------HALLRWTALLCLMVFVSAFSFGFGPVTWLVLSEIYPVEIRGRAFAFCNSFNWAANLFISLSFLDLIGTIG-SWTFLLYGLTAVLGLGFIYLFVPET-----------------------------------------
53 -100%-141 - C2 - - U053 - A:[1-517] MGHSPPVLPLCASVSLLGGLTFGYELAVISGALLPLQLDFGLSCLEQEFLVGSLLLGALLASLVGGFLIDCYGRKQAILGSNLVLLAGSLTLGLAGSLAWLVLGRAVVGFAISLSSMACCIYVSELVGPRQRGVLVSLYEAGITVGILLSYALNYALAGTPWGWRHMFGWATAPAVLQSLSLLFLPAGTDETATHKDLIPLQGGEAPKLGPGRPRYSFLDLFRAR-NMRGRTTVGLGLVLFQQLTGQPNVLCYASTIFSSVGFH---SAVLASVGLGAVKVAATLTAMGLVDRAGRRALLLAGCALMALSVSGIGLVSFAVPM---------------------------------------------------------------------------------HALLRWTALLCLMVFVSAFSFGFGPVTWLVLSEIYPVEIRGRAFAFCNSFNWAANLFISLSFLDLIGTIG-SWTFLLYGLTAVLGLGFIYLFVPETKGQSLAEIDQQFQKRRF------------------------
54 -100%-141 - C2 - - U054 - A:[1-517] MGHSPPVLPLCASVSLLGGLTFGYELAVISGALLPLQLDFGLSCLEQEFLVGSLLLGALLASLVGGFLIDCYGRKQAILGSNLVLLAGSLTLGLAGSLAWLVLGRAVVGFAISLSSMACCIYVSELVGPRQRGVLVSLYEAGITVGILLSYALNYALAGTPWGWRHMFGWATAPAVLQSLSLLFLPAGTDETATHKDLIPLQGGEAPKLGPGRPRYSFLDLFRAR-NMRGRTTVGLGLVLFQQLTGQPNVLCYASTIFSSVGFH---SAVLASVGLGAVKVAATLTAMGLVDRAGRRALLLAGCALMALSVSGIGLVSFAVPM---------------------------------------------------------------------------------HALLRWTALLCLMVFVSAFSFGFGPVTWLVLSEIYPVEIRGRAFAFCNSFNWAANLFISLSFLDLIGTIG-SWTFLLYGLTAVLGLGFIYLFVPETKGQSLAEIDQQFQKRRF------------------------