@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : MGG_17132T0: (2018-03-19 )
GCEVLISKKSGGDGPVKSSCIPKSGSKVIVINGKTVTVSADGSCKFSSKDLDPSLAMKFEGDCIGI
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...----......10....-----....---20...--.--.--...-30------.--.-------......-.40..----....-------.---.--.50--...-----.---....60.....------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
C
E
----
V
L
I
SKKSGGDGP-----VKSS---CIPKS--G--
S
--
K
V
I
-
V
-------I--N-------G
K
T
V
T
V
-SA-DG----SCKF-------S---S--KDL--DP
S
-----
L
---
A
M
K
FEGDCIGI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
65.59
21%
-40
* C2 *
-
2MM2
-
?
A:
[1-65]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
T
----
A
N
I
L
N
I
N
E
V
--
V
-----
I
A
T
G
---
C
V
P
A
G
--
G
--
N
--
L
I
I
-
R
-------
V
G-
S
-------
D
H
S
Y
L
I
-
R
A
-
T
V
----
S
C
G
L
-------
S
L
N
P
S
--
Q
S
F
--
I
N
G
-----
E
---
S
L
A
S
G
G
R
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
61.65
31%
-162
- C4 -
-
1H17
2
PFLB_ECOLI
A:
[102-137]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
P
-----
L
K
R
A
---
L
I
P
F
G
--
G
--
I
--
K
M
I
------------------------------
E
G
----
S
C
K
A
-------
Y
---
N
--
R
E
L
--
D
P
M
-----
I
---
K
K
I
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
60.81
27%
-57
- C2 -
-
5F4H
5
?
A:
[1-437]
M
N
D
L
M
L
D
K
S
A
L
L
F
G
V
S
K
Y
L
E
K
GIIT
G
N
V
L
I
H
K
S
L
L
A
E
L
E
R
E
S
N
D
GLVS
A
E
I
A
L
D
E
V
K
K
L
K
D
I
T
E
R
I
L
V
N
F
E
I
V
GDDSKKGE
A
N
E
L
S
R
E
Y
C
L
E
K
G
C
I
I
V
T
AD
E
T
Q
K
K
I
C
D
A
M
G
I
Q
Y
N
F
L
Q
PLKQGLSFESFFDDETM
S
L
H
I
K
E
DTV
P
R
A
K
K
G
K
P
G
N
W
K
F
V
N
LSD
K
P
M
L
S
T
D
V
R
M
I
A
N
E
I
I
N
A
V
RLIKGSFVEIERRG
S
L
I
I
Q
L
G
N
Y
R
----
V
V
I
T
R
P
--------------------
P
L
S
--
D
--
G
--
W
E
I
-
T
-------
I
--
T
-------
R
P
V
V
R
K
------------
R
L
-------
E
---
D
--
Y
N
L
--
D
E
R
-----
L
---
I
K
R
L
E
E
R
A
E
G
I
I
I
A
G
A
PGMG
A
T
T
F
A
Q
A
L
A
E
Y
Y
M
R
L
G
K
I
V
K
T
I
E
SPRD
M
H
L
P
PE
I
T
Q
Y
S
KNYAEIG
E
L
H
D
I
L
L
L
S
RPD
Y
T
V
Y
D
EMRN
D
E
D
F
K
L
Y
V
D
L
R
L
A
G
V
G
M
V
G
V
V
HATS
P
I
D
A
I
H
R
F
V
N
R
VDIGT
I
P
N
I
L
D
T
I
I
F
I
N
SGNVS
K
V
Y
T
L
E
M
T
V
K
VPAGLKEA
D
L
A
R
P
V
V
E
I
K
DLATGNTE
Y
E
I
Y
V
FGEQ
T
M
I
V
P
VNR
4
PsiBlast_PDB
60.68
31%
-166
- C4 -
-
1H16
2
PFLB_ECOLI
A:
[102-137]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
P
-----
L
K
R
A
---
L
I
P
F
G
--
G
--
I
--
K
M
I
------------------------------
E
G
----
S
C
K
A
-------
Y
---
N
--
R
E
L
--
D
P
M
-----
I
---
K
K
I
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
60.04
31%
-169
- C4 -
-
2PFL
-
PFLB_ECOLI
A:
[102-137]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
P
-----
L
K
R
A
---
L
I
P
F
G
--
G
--
I
--
K
M
I
------------------------------
E
G
----
S
C
K
A
-------
Y
---
N
--
R
E
L
--
D
P
M
-----
I
---
K
K
I
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
59.38
31%
-161
- C4 -
-
1H18
1
PFLB_ECOLI
A:
[102-137]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
P
-----
L
K
R
A
---
L
I
P
F
G
--
G
--
I
--
K
M
I
------------------------------
E
G
----
S
C
K
A
-------
Y
---
N
--
R
E
L
--
D
P
M
-----
I
---
K
K
I
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
59.01
31%
-177
- C4 -
-
1CM5
-
PFLB_ECOLI
A:
[102-137]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
P
-----
L
K
R
A
---
L
I
P
F
G
--
G
--
I
--
K
M
I
------------------------------
E
G
----
S
C
K
A
-------
Y
---
N
--
R
E
L
--
D
P
M
-----
I
---
K
K
I
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
57.72
31%
-161
- C4 -
-
3PFL
-
PFLB_ECOLI
A:
[102-137]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
P
-----
L
K
R
A
---
L
I
P
F
G
--
G
--
I
--
K
M
I
------------------------------
E
G
----
S
C
K
A
-------
Y
---
N
--
R
E
L
--
D
P
M
-----
I
---
K
K
I
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
57.45
31%
-176
- C4 -
-
1QHM
-
PFLB_ECOLI
A:
[1102-1137]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
P
-----
L
K
R
A
---
L
I
P
F
G
--
G
--
I
--
K
M
I
------------------------------
E
G
----
S
C
K
A
-------
Y
---
N
--
R
E
L
--
D
P
M
-----
I
---
K
K
I
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
57.19
31%
-158
- C4 -
-
1MZO
-
PFLB_ECOLI
A:
[102-137]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
P
-----
L
K
R
A
---
L
I
P
F
G
--
G
--
I
--
K
M
I
------------------------------
E
G
----
S
C
K
A
-------
Y
---
N
--
R
E
L
--
D
P
M
-----
I
---
K
K
I
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
SP3
57.12
27%
43
- C2 -
-
7TAA
-
?
?:
[382-476]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YKNWPIYKDDT
T
I
A
M
R
K
G
T
D
GS
Q
I
V
T
I
L
S
N
K
G
A
S
G
D
S
Y
T
L
S
L
S
G
A
---
G
Y
-
T
A
--
G
--
Q
--
Q
L
T
E
V
-------
I
--
G
-------
C
T
T
V
T
V
-
G
S
-
D
G
----
N
V
P
V
-------
P
---
M
--
A
G
G
--
L
P
R
-----
V
L
Y
P
T
E
K
L
A
G
S
--
K
I
CS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
54.17
20%
-3
- C2 -
-
2JN4
-
?
A:
[1-66]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
----
V
M
I
R
K
T
A
T
G
---------
H
S
A
---
Y
V
A
K
K
--
D
--
L
--
E
E
L
-
I
-------
V
--
E
MENPALW
G
G
K
V
T
L
-
A
N
-
G
W
----
Q
L
E
L
-------
P
---
A
--
M
A
A
--
D
T
P
-----
L
---
P
I
T
V
E
A
R
K
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
55
SP3
52.26
22%
57
- C2 -
-
1WM2
-
SUMO2_HUMAN
A:
[12-89]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TE
N
N
D
----
H
I
N
L
K
V
A
G
Q
D
G
S
-----
V
V
Q
F
---
K
I
K
R
H
--
T
PL
S
--
K
L
M
-
K
A
Y
C
E
R
Q
G
L
--
S
-------
M
R
Q
I
R
F
-
R
F
-
D
G
----
Q
P
-
I
-------
N
---
E
--
T
D
T
--
P
A
Q
-----
L
---
E
M
E
-
D
E
D
T
I
D
V
F
Q
Q---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
Fugue
52.25
17%
-37
- C2 -
-
3LKX
-
A:
[25-90]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
N
N
I
S
G
---------
I
E
E
V
---
N
M
F
T
N
--
Q
--
G
--
T
V
I
-
H
-------
F
--
N
-------
N
P
K
V
Q
A
-
S
L
-
A
N
----
T
F
T
I
T
G
H
A
E
T
K
Q
---
L
--
T
E
M
--
L
P
S
-----
I
---
L
N
Q
L
G
A
D
S
L
T
S
L-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
51.74
28%
20
- C2 -
-
2VAB
-
HA1B_MOUSE
A:
[1-178]
--------------------------------------------------------------------------------------------------------G
P
H
S
L
R
Y
F
V
T
A
V
S
R
P
GLGE
P
R
Y
M
E
V
G
Y
VDDTEF
V
R
F
D
SDAENPRYEPRARWMEQEG
P
E
Y
W
E
R
E
T
Q
K
A
K
G
N
E
Q
S
F
R
V
D
L
R
T
L
L
G
Y
Y
NQSKG
G
S
H
T
I
Q
V
I
S
G
C
E
----
V
------
G
S
D
G
R
-----
L
L
R
G
---
Y
Q
Q
Y
A
Y
D
G
--
C
--
D
Y
I
-
A
-------
L
--
N
-------
E
D
L
K
T
W
-
T
A
A
D
M
----
A
A
L
I
-------
T
---
K
--
H
K
W
--
E
Q
A
G
E
A
E
R
L
---
R
A
Y
L
E
G
T
C
V
E
W
L
R
R
Y
L
K
N
G
NAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
SP3
50.01
22%
39
- C2 -
-
1SCJ
-
?
B:
[1-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
K
----
Y
I
V
G
F
K
Q
T
M
S
A
M
-----
S
S
A
K
K
K
D
V
I
S
Q
K
--
G
--
G
--
K
V
E
-
K
-------
Q
FK
Y
-------
V
N
A
A
A
A
-
T
L
-
D
E
----
K
----------
A
---
V
--
K
E
L
K
K
D
P
S
-----
V
---
A
Y
V
E
E
-
D
H
I
A
H
EY----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
49.60
27%
153
- C- -
-
4RWR
-
?
A:
[63-331]
----------------------------------------------VYREKQKKVESLP
M
E
E
Y
V
T
G
V
V
A
S
E
MNASFE
I
E
A
L
K
A
Q
A
L
A
A
R
T
F
V
V
Q
R
M
L
S
GGKKNNADVTDTDQVYKS
K
E
E
L
K
K
Q
W
GNN
Y
E
N
N
L
K
K
I
E
E
A
V
S
K
T
AG
Q
V
L
T
Y
EGKPISA
S
F
F
S
T
SNG
R
T
E
N
A
A
D
YWGNDYPYL
K
S
V
D
S
PWDQASPKF
T
S
E
Q
I
F
T
V
A
D
F
Q
----
K
R
L
G
V
K
V
L
A
D
G
K
-----
V
G
D
I
---
K
G
R
T
E
--
G
--
K
RV
K
D
V
-
A
-------
F
--
Q
-------
G
K
T
L
T
G
R
D
V
-
R
D
----
K
L
E
L
-------
R
---
S
--
S
D
-----------
F
---
T
W
K
Q
E
G
D
K
I
V
V
T
T
K
G
FGHGVGMS
Q
Y
G
A
N
G
M
A
A
E
GKK
Y
T
D
I
V
A
H
Y
Y
KG
V
E
I
K
T
MNDY---------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
48.82
21%
-42
- C2 -
-
5TDW
-
A:
[1-69]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
I
----
T
C
I
C
D
L
N
D
D
D
G
F
-----
T
I
Q
C
---
D
H
C
N
R
--
W
--
Q
--
H
A
I
-
C
-------
Y
--
G
-------
I
K
D
I
G
M
-
A
P
-
D
D
Y
L
C
N
S
C
---------
D
---
P
--
R
E
V
--
D
I
N
-----
L
---
A
R
K
I
Q
Q
E
R
I
N
V
K-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
46.66
21%
-136
- C3 -
-
3WZT
-
?
B:
[798-826]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
--
G
--
D
--
N
F
V
-
I
-------
L
--
N
-------
G
R
V
L
G
P
-
I
T
---------
D
F
-------
K
---
K
--
E
D
F
--
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
46.11
20%
-3
- C2 -
-
2MM0
-
?
A:
[11-64]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
V
-----
I
A
T
G
---
C
V
P
A
G
--
G
--
E
--
L
R
I
-
F
-------
V
--
G
S------
S
H
S
Y
L
I
-
K
A
-
T
S
----
S
C
G
L
-------
S
---
L
T
N
Q
V
F
--
I
N
G
-----
E
---
S
V
Q
S
G
G
R
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------