@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0451: (2017-12-22 )
MRMLPILLLFLALLPFFSKFVTGGSSFSWEVFLIFIIDWVLLIVFAIQISYIFWRLSQKWKELSNK
Atome Classification :
(19 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....-------.....10---------.----...--..-...20.......-.30.....--...40.........------50.-.-......60..-....--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR
M
L
-------
P
I
L
L
L
F
----------
L
----
A
L
L
--
P
F
-
F
S
K
F
VTGGSSF
S
-
W
E
V
F
L
I
F
I
--
I
D
W
V
-
L
L
I
V
F
A
I
Q
I
------
S
Y
I
-
F
-
W
R
L
S
Q
K
W
-
K
E
-
L
SNK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
67.35
26%
-229
* C4 *
-
1WAZ
-
?
A:
[24-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-------
P
V
L
V
I
L
----------
L
----
G
V
V
--
G
L
-
S
A
---------------
L
T
G
Y
--
L
D
Y
V
-
L
L
P
A
L
A
I
F
I
------
G
L
T
-
I
-
Y
A
I
Q
R
K
R
-
Q
A
-
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
63.86
21%
-143
* C3 *
-
2GWD
1
GSH1_BRAJU
A:
[14-449]
EPLT
R
E
D
L
I
A
Y
L
A
S
G
CKSKEK
W
R
I
G
T
E
H
E
K
F
G
F
E
VNTLRPMK
Y
D
Q
I
A
E
L
L
N
S
I
A
E
R
F
E
W
E
K
V
M
EGDKII
G
L
K
Q
GK
Q
S
I
S
L
E
PGGQFELSGAPLET
L
H
Q
T
C
A
E
V
N
S
H
L
Y
Q
V
K
A
V
A
E
E
M
G
I
G
F
L
G
M
GFQPKWRRED
I
P
T
M
PK
G
R
Y
D
I
M
R
N
Y
MPKVGSL
G
L
D
M
M
L
R
T
C
T
V
Q
V
N
L
D
F
SS
E
A
D
M
I
R
K
F
R
A
G
L
A
L
Q
-------
P
I
A
T
A
L
----------
F
----
A
N
S
--
P
F
-
T
E
G
K
P
N
G
F
L
S
M
R
-
S
H
I
---------------------------------------
W
-
T
D
-
T
D
K
D
RTGMLPFVFDDSFG
F
E
Q
Y
V
D
Y
A
L
D
VPMY
F
A
Y
R
NGKYVDCTGMT
F
R
Q
F
L
A
GKLPCLPG
E
L
P
T
Y
N
D
W
E
N
H
L
T
T
IFPE
V
R
L
K
R
Y
M
E
MRGADGGP
W
R
R
L
C
A
L
P
A
F
W
V
G
L
LYD
E
D
V
L
Q
S
V
L
D
L
T
A
DWT
P
A
E
R
E
M
L
R
N
K
V
PVTGLKTPFRDGL
L
K
H
V
A
E
D
V
L
K
L
A
K
D
G
L
E
R
R
GYKEVGFLNAV
T
E
V
V
R
T
GVT
P
A
E
N
L
L
E
M
Y
N
G
EWGQSV
D
P
V
F
Q
E
L
LY
19
Fugue
60.16
20%
-
- C3 -
-
4QR2
-
?
A:
[1-83]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-------
M
V
L
V
T
Y
D
V
N
TET
P
A
G
R
K
----
R
L
R
--
H
V
-
A
K
L
C
V
D
Y
G
Q
R
V
Q
-
N
S
V
F
E
C
S
V
T
P
A
E
F
V
-
D
I
K
H
R
L
T
Q
I
IDEKT
D
S
I
R
-
F
-
Y
L
L
G
K
N
W
-
Q
R
-
R
V
E
T
L
G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
55.47
31%
-377
- C4 -
-
1WAZ
-
?
A:
[42-67]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
--
L
D
Y
V
-
L
L
P
A
L
A
I
F
I
------
G
L
T
-
I
-
Y
A
I
Q
R
K
R
-
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
51.63
18%
-13
- C3 -
-
1R8G
-
GCS2_ECOLI
A:
[3-370]
--------------------------------------------------LPDFHVSEPF
T
L
G
I
E
L
E
M
Q
V
V
N
P
PGYDLSQDS
S
M
L
I
D
A
V
KNKIT
A
G
E
V
K
H
D
ITES
M
L
E
L
A
T
D
VCRD
I
N
Q
A
A
G
Q
F
S
A
M
Q
K
V
V
L
Q
A
A
T
D
H
H
L
E
I
C
G
G
GTHPFQKWNFGYLIQQ
A
T
V
F
G
Q
H
V
H
V
G
C
AS
G
D
D
A
I
Y
L
L
H
G
L
S
R
F
V
-------
P
H
F
I
A
L
----------
S
----
A
A
S
--
P
Y
M
Q
G
T
D
-
T
R
F
A
S
S
R
-
P
N
I
F
S
A
F
P
--
D
N
G
P
M
P
W
V
S
N
W
Q
Q
F
------
E
A
L
-
F
-
R
C
L
S
Y
T
T
M
I
D
-
S
I
K
D
LHWD
I
R
P
S
PHFG
T
V
E
V
R
VMDTPLT
L
S
H
A
V
N
M
A
G
L
I
Q
A
T
A
H
W
L
L
T
E
RPFKHQEKDYLL
Y
K
F
N
R
F
Q
A
C
R
YGLE
G
V
I
T
D
PHTG
D
R
R
P
L
T
E
D
T
L
R
L
L
E
K
I
A
P
S
A
H
K
I
GA
S
S
A
I
E
A
L
H
R
Q
V
V
S
GLN
E
A
Q
L
M
R
D
F
V
A
D
GGS
L
I
G
L
V
K
K
H
C
E
I
W
A----------------------------------------------------------------
12
Fugue
50.84
10%
-18
- C3 -
-
1PQX
-
?
A:
[1-91]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
I
I
S
I
S
E
T
PN
H
N
T
M
K
I
----------
T
L
SES
R
E
G
--
M
T
-
S
D
T
Y
T
K
V
D
D
S
Q
P
-
A
F
I
N
D
I
L
K
--
V
E
G
V
-
K
S
I
F
H
V
M
D
F
------
I
S
V
-
D
-
K
E
N
D
A
N
W
-
E
T
-
V
L
P
K
V
E
A
V
F
E
L
E
H
H
H
H
HH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
49.18
33%
-532
- C4 -
-
2M67
-
?
A:
[44-67]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Y
V
-
L
L
P
A
L
A
I
F
I
------
G
L
T
-
I
-
Y
A
I
Q
R
K
R
-
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
44.49
15%
-260
- C4 -
-
2M3E
-
ITAL_HUMAN
A:
[1062-1088]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Q
M
-
L
Y
L
Y
V
L
S
G
--
I
G
G
L
-
L
L
L
---
L
L
I
------
F
I
V
-
L
-
Y
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
43.06
32%
-353
- C4 -
-
2LJ2
-
?
A:
[44-68]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Y
V
-
L
L
P
A
L
A
I
F
I
------
G
L
T
-
I
-
Y
A
I
Q
R
K
R
-
Q
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
42.93
23%
-20
- C4 -
-
5MQF
-
SPF27_HUMAN
K:
[13-225]
---------------------------------------------------------------------------------------------------------------------------------------------------------------VDALPYFDQGYEAPGVREAAAALVEEE
T
R
R
Y
-------
R
P
T
K
N
Y
----------
L
----
S
Y
L
TA
P
D
-
Y
S
A
F
E
T
D
------------------------
I
M
R
N
E
F
------
E
R
L
-
A
-
A
R
Q
P
I
A
W
-
Q
E
-
C
V
N
N
SMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEANKENIRQDF------------------------------------------------------------------------------------------------
4
HHSearch
42.42
6%
-376
- C4 -
-
2JWA
-
B:
[149-165]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
-
L
T
S
I
I
S
A
V
--
V
G
I
L
-
L
V
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
41.75
34%
-45
- C4 -
-
2RPW
-
X:
[1-25]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
S
H
T
A
------
S
Y
L
R
L
-
W
A
L
S
L
A
H
-
A
Q
-
L
S
S
K
K-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
41.25
13%
-225
- C4 -
-
2KNC
-
A:
[960-989]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
R
A
I
P
-
I
W
W
V
L
V
G
V
--
L
G
G
L
-
L
L
L
---
T
I
L
------
V
L
A
-
M
-
W
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
40.65
13%
-155
- C4 -
-
2K1A
-
A:
[960-989]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
R
A
I
P
-
I
W
W
V
L
V
G
V
--
L
G
G
L
-
L
L
L
---
T
I
L
------
V
L
A
-
M
-
W
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
36.04
17%
-206
- C4 -
-
2L8S
-
A:
[4-32]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
G
R
V
P
-
L
W
V
I
L
L
S
A
--
F
A
G
L
-
L
L
L
---
M
L
L
------
I
L
A
-
L
-
W
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
35.46
21%
197
- C4 -
-
2RMZ
-
?
A:
[699-726]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
--
M
G
A
I
-
L
L
I
G
L
A
A
L
L
------
I
W
K
-
L
-
L
I
T
I
H
D
R
-
K
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
31.91
6%
-120
- C2 -
-
5CTD
-
A:
[1-64]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
G
P
-------
P
--------------------
G
P
P
--
G
P
-
P
G
P
P
G
A
R
G
Q
A
G
V
M
G
F
P
G
P
P
G
P
--
P
G
P
P
-
G
R
A
P
T
D
Q
H
I
------
K
Q
V
-
C
M
R
V
I
Q
E
H
F
-
A
E
M
A
A
S
L
K-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
29.32
28%
53
- C1 -
-
5JTM
-
PPB_ECOLI
E:
[1-25]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-------
K
Q
S
T
I
A
----------
L
----
A
L
L
--
P
L
-
L
F
T
P
V
T
K
A
R
T
P
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
24.04
13%
-170
- C4 -
-
2LX0
-
?
A:
[9-32]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
G
L
-
V
A
L
L
T
F
L
A
F
------
G
F
W
-
L
-
F
K
Y
L
Q
K
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------