@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr1944: (2018-01-23 )
MRVNITLEHKESGERLYLTSKNKRNTPDRLQLKKYSPKLRKHVVFTEVK
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.......--..---20-------........-------------.30......--..40........---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
R
V
N
I
T
L
EHK-ESG
E
R
L
Y
--
L
T---S--------KNKRNTP
D
-------------
R
L
Q
L
K
KY
S
P
--
K
L
R
K
H
V
V
F
TEVK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
73.62
40%
49
* C13 *
-
3J5S
-
RL33_ECOLI
H:
[4-52]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
E
K
I
K
L
V
S
S
-
A
G
T
G
H
F
Y
--
T
T
---
T
--------
K
N
K
R
T
K
P
E
-------------
K
L
E
L
K
K
F
D
P
--
V
V
R
Q
H
V
I
Y
K
E
A
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
52
Fugue
69.88
32%
-27
* C8 *
-
5FHY
-
FLID2_PSEAE
A:
[21-249]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DIL
K
A
S
A
T
Q
S
A
V
A
G
T
Y
Q
I
Q
V
N
S
L
A
T
S
S
K
I
A
L
Q
AIADPAN
A
K
F
N
S
G
T
L
N
I
S
V
GDTKLP
A
I
T
V
D
SSNNT
L
A
G
M
R
D
A
I
N
Q
A
G
K
E
A
G
V
S
A
T
I
I
T
D
-
N
S
G
S
R
L
V
--
L
S
---
S
--------
T
K
T
G
D
G
K
D
------------------------------
I
K
V
E
V
S
D
DGSGGNTSLSQLAFDPATAPKLSDGA
A
A
G
Y
VT
K
A
A
N
G
E
I
T
V
DG
L
K
R
S
I
ASNSVSDVIDG
V
S
F
D
V
K
A
VTEAG
K
P
I
T
L
T
V
S
RDDAG
V
K
D
N
V
K
K
F
V
E
A
Y
N
T
L
T
K
FINEQT
V
V
T
K
V
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
56
Fugue
60.97
20%
78
- C7 -
-
4ZOQ
-
?
A:
[30-90]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
Y
L
L
L
E
H
V
-
K
D
K
S
K
L
L
--
D
T
---
A
--------
E
Q
F
H
I
H
A
D
V
IEEIG
F
A
K
V
T
G
E
K
Q
K
L
A
P
F
T
K
--
K
L
A
E
K
V
G
A
D
V
I
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
Fugue
54.60
28%
181
- C6 -
-
3W5N
8
?
A:
[3-1031]
A
L
R
V
T
SPSVEYVQRPLGLDAA
H
P
R
L
S
W
P
M
A
S
AAPGRRQS
A
Y
Q
V
R
V
A
SSAAGLSHPDVWDSGKVVSDDSVLVPYAG
P
P
L
K
P
R
T
R
Y
F
W
S
V
R
V
W
D
ADGGASEWSA
P
S
W
W
E
T
G
LMGASQWS
A
K
W
I
S
A
P
APLTEAPSLEG
S
S
W
I
W
FPEGEPANSAPA
A
T
R
W
F
R
R
T
V
D
L
P
D
DIT
G
A
T
L
A
I
S
A
DN
V
Y
A
V
S
V
DGAEV
A
R
T
D
LEADNEGWR
R
P
A
V
I
DVLDHVHS
G
N
N
T
L
A
V
S
A
S
N
ASV
G
P
A
G
W
I
C
V
L
V
L
T
T
AS
G
E
K
K
I
F
SDAS
W
K
S
T
DHEPADGWREPDFDDSGWPAAKVAAAWGAGPWGR
V
A
P
V
A
S
A
A
N
Q
L
R
H
E
F
R
L
P
H
K
K
V
S
R
A
R
L
Y
--
A
T
---
A
L
G
L
Y
E
A
H
L
N
G
R
R
V
G
R
D
-------------
Q
L
A
P
G
W
T
D
Y
--
R
K
R
V
Q
Y
Q
T
Y
D
V
T
SSVRP
G
A
N
A
L
A
A
Y
V
A
PGWYAGNVGMFGPHQYGE
R
P
A
L
L
A
Q
L
E
V
E
Y
ADG
T
S
E
R
I
T
S
GPD
W
R
A
A
SGPIVSADLLS
G
E
T
Y
D
ARKETAGWTSPGFDDRA
W
L
A
V
R
GADNDVPE
Q
I
V
A
QVDGPVRIA
K
E
L
P
AR
K
V
T
E
PKPG
V
F
V
L
D
LGQNM
V
G
S
V
R
L
R
V
S
G
D
AG
T
T
V
R
L
R
H
A
EVLNPDGTIYTANLRSAAA
T
D
T
Y
T
L
KGQGE
E
T
Y
E
P
R
F
T
F
H
G
F
R
Y
V
E
V
T
GFPGKPSTTS
V
T
G
R
V
M
H
TS
A
P
F
T
F
E
F
E
T
NV
P
M
L
N
K
L
H
S
N
I
T
W
G
Q
R
G
N
FLSVPTDTPARDERLGW
T
G
D
I
N
V
F
A
P
T
A
A
Y
T
MES
A
R
F
L
T
K
W
L
V
D
L
R
D
A
QTSD
G
A
F
T
DVAPAVGNLGNGVAGWGD
A
G
V
T
V
P
W
A
L
Y
Q
A
YGD
R
Q
V
L
A
D
A
L
P
S
V
H
A
W
L
R
Y
L
E
K
H
SDGLLRPADGYGDWLNVSDETP
K
D
V
I
A
T
A
Y
F
A
H
S
A
D
L
A
A
R
M
A
T
E
L
GKDA
A
P
Y
T
D
L
F
T
R
I
R
K
A
F
Q
T
A
YVASDGKVKGDT
Q
S
A
Y
V
L
T
L
S
M
NLVPDAL
R
K
A
A
A
D
R
L
V
A
L
I
E
A
K
D
WHLSTG
F
L
G
T
P
R
L
L
P
V
L
T
D
T
GH
T
D
V
A
Y
R
L
L
H
QRTFPS
W
G
Y
P
I
D
K
GSTTMWERWDSIQPDGGFQTPEMNSFNHYAYGSV
G
E
W
M
Y
A
NIAGIAPGRAGYR
Q
V
V
I
R
P
R
P
G
GEVT
S
A
R
A
T
F
ASLH
G
P
V
S
T
R
W
Q
Q
R
SG
G
F
V
L
T
C
S
V
P
P
N
T
T
A
E
V
W
I
P
A
DHPDRVQHTHGTFVRAEDGCA
V
F
E
V
G
S
G
S
H
R
F
T
V
K
3
PsiBlast_PDB
52.77
37%
-28
- C12 -
-
3RCC
-
?
A:
[78-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
H
A
-
K
K
G
M
K
V
Y
--
L
T
---
D
--------
K
S
K
V
Y
T
Y
T
-------------
I
T
E
I
S
K
V
T
P
--
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
52.54
21%
-
- C13 -
-
3IY9
-
RM33_HUMAN
P:
[6-51]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
N
I
L
V
R
M
V
S
E
-
A
G
T
G
F
C
F
--
N
T
---
K
--------
R
N
R
--
L
R
E
-------------
K
L
T
L
L
H
Y
D
P
--
V
V
K
Q
R
V
L
F
V
E
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
54
Fugue
51.42
12%
-15
* C12 *
-
5E4B
1
?
A:
[34-209]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E
Q
F
Q
L
R
G
V
L
W
G
K
A
Y
S
W
K
I
T
GTT
I
D
K
V
W
S
I
V
G
DYVRVDNWVSSVVK
S
S
H
V
V
S
G
E
A
N
Q
-
T
G
C
V
R
R
F
--
V
C
Y
P
A
S
--------
E
G
E
S
E
T
V
D
-------------
Y
S
E
L
I
H
M
N
A
--
A
A
H
Q
Y
M
Y
M
I
V
G
G
NITGFSLMKN
Y
V
S
N
I
S
L
S
S
L
P
EEDG
G
G
V
I
F
Y
W
S
F
T
A
E
PASNLT
E
Q
K
C
I
E
I
V
F
P
L
Y
T
T
A
L
K
D
L
C
T
H
L
SIPESS
V
T
L
L
DD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
45.63
35%
16
- C12 -
-
5DV0
-
?
A:
[80-110]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
N
A
-
K
N
G
M
K
I
Y
--
L
T
---
D
--------
K
N
K
V
Y
T
Y
E
-------------
I
R
E
V
K
R
V
T
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
42.97
13%
-239
- C9 -
-
2K4X
-
RS27A_THEAC
A:
[15-30]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
K
H
R
F
C
P
--
R
C
G
P
G
V
F
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
53
Fugue
40.99
22%
-
- C8 -
-
1KVE
-
?
?:
[19-81]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------W
S
L
R
W
R
M
QKSTTIAA
I
A
G
C
S
GAATFGGLAGG
I
V
G
C
I
A
A
G
I
L
A
I
L
Q
G
F
E
V
N
W
H
N
G
-
G
G
G
D
R
S
N
P
V-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
40.83
42%
162
* C10 *
-
4XAI
-
?
P:
[1-21]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
A
D
T
P
A
-------------
L
R
Q
L
S
E
Y
A
-----
R
P
H
V
A
F
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
Fugue
40.06
31%
-96
- C10 -
-
1IEN
1
A:
[1-19]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
N
W
R
C
C
--
L
I
---
P
--------
A
C
R
R
N
-------------------
H
K
K
F
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
HHSearch
39.79
13%
-184
* C14 *
-
5FJ8
-
RPC10_YEAST
I:
[1-15]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
S
F
C
P
--
S
C
N
N
M
L
L
I
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
38.92
20%
-145
* C15 *
-
5JBH
-
RS27A_PYRFU
Y:
[16-30]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
K
N
K
F
C
P
--
R
C
G
P
G
V
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
HHSearch
37.33
13%
-192
- C14 -
-
5FJA
-
RPC10_YEAST
I:
[1-33]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
S
F
C
P
--
S
C
N
N
M
L
L
I
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
37.20
20%
-145
- C15 -
-
5JB3
-
RS27A_PYRFU
Y:
[16-30]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
K
N
K
F
C
P
--
R
C
G
P
G
V
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
36.05
14%
-4
* C9 *
-
2E72
-
A:
[10-23]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
G
R
K
I
C
P
--
R
C
N
A
Q
F
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
HHSearch
31.34
23%
127
- C9 -
-
2RFK
-
NOP10_PYRFU
B:
[14-26]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
E
V
C
P
--
V
C
G
E
K
T
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
30.71
25%
120
- C9 -
-
2AUS
-
NOP10_PYRAB
D:
[16-27]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
E
T
C
P
--
V
C
G
E
K
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
30.10
29%
49
- C5 -
-
3J0L
-
?
F:
[6-24]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
K
T
Y
C
K
GK
T
C
R
K
H
T
Q
H
K
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------