@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VL74: (2017-10-31 )
MNFSIYWQHADAVSKTLYFILLAMSIATWTVFILRLMGTRQLKQQAYAQLSQAITSLKAKLQPLSFEQRKAVAEQALLRQISAEKANADKGISVLGTIASIAPFVGLFGTVWGIFHALVAVGKSGQAGLAQVATPVGEALIMTGLGLAVAIPAVLAYNICVRANRGLAHDLQDQAHSLLIDTMLQQDSTVKSDVKTAQQSYVGGQA
Atome Classification :
(20 SA)
----------.........--10........20--------........30---.....----....40..--.....---------.---50..------..--------...-----.60.....------.-----.-----------.----70-----------.....-------------...---80.......-----.90....--------....100.......110....---...120.------------------......130.......------..140.......150.......160.......170.......180.......190...----....200....------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------M
N
F
S
I
Y
W
Q
H
--
A
D
A
V
S
K
T
L
Y
F
I
L
--------
L
A
M
S
I
A
T
W
T
----
V
F
I
L
R
----
L
M
G
T
R
Q
L
K
--
Q
Q
A
Y
A
---------
Q
---
L
S
Q
A
------
I
T
--------
S
L
K
-----
A
KLQPL
S
F
------
E
-----
Q
-----------
R
----
K
A
-----------
V
A
E
Q
A
-------------
L
L
R
---
Q
I
S
AEKANA-----DK
G
I
S
V
L
--------
G
T
I
A
S
I
A
P
F
V
G
L
F
G
T
V
W
G
I
F
H
---
A
L
V
AVGK------------------SGQA
G
L
A
--
Q
V
A
T
P
V
G
------
E
A
L
I
M
TG
L
G
L
A
V
A
I
P
A
V
L
A
Y
N
I
C
V
RANRGL
A
H
D
L
Q
D
Q
A
H
S
L
L
I
D
T
M
LQQDS
T
V
K
S
D
V
K
----
T
A
Q
Q
S
YVGGQA------------------------------
22
PsiBlast_CBE
70.89
33%
-59
- C5 -
-
5SV0
1
EXBB_ECOLI
D:
[19-218]
---------------------
A
D
I
V
V
K
C
V
M
I
G
L
--------
I
L
A
S
V
V
T
W
A
----
I
F
F
S
K
S
V
E
F
F
N
Q
K
R
R
L
K
R
E
Q
Q
L
L
A
---------
E
ARS
L
N
Q
A
N
D
I
A
A
D
F
G
--------
S
K
S
-----
L
S
L
H
L
L
N
E
------
A
-----
Q
-----------
N
----
E
L
-----------
E
L
S
E
G
SDDNEGIE
R
T
S
F
R
L
E
R
---
R
V
A
A
V
G
R
Q
M
-----
G
R
G
N
G
Y
L
--------
A
T
I
G
A
I
S
P
F
V
G
L
F
G
T
V
W
G
I
M
N
---
S
F
I
G
I
A
Q
------------------
T
Q
T
T
N
L
A
--
V
V
A
P
G
I
A
------
E
A
L
L
A
T
A
I
G
L
V
A
A
I
P
A
V
V
I
Y
N
V
F
A
R
Q
I
G
G
F
K
A
M
L
G
D
V
A
A
Q
V
L
L
------------------------------------------------------------
19
PsiBlast_CBE
70.61
33%
-61
- C5 -
-
5SV0
1
EXBB_ECOLI
G:
[16-218]
----------------
Y
Q
H
--
A
D
I
V
V
K
C
V
M
I
G
L
--------
I
L
A
S
V
V
T
W
A
----
I
F
F
S
K
SVEF
F
N
Q
K
R
R
L
K
RE
Q
Q
L
L
A
---------
E
ARS
L
N
Q
A
NDIAAD
F
G
--------
S
K
S
-----
L
S
L
H
L
L
N
E
------
A
-----
Q
-----------
N
----
E
L
-----------
E
L
S
E
G
SDDNEGIERTSFR
L
E
R
---
R
V
A
A
V
G
R
Q
M
-----
G
R
G
N
G
Y
L
--------
A
T
I
G
A
I
S
P
F
V
G
L
F
G
T
V
W
G
I
M
N
---
S
F
I
G
I
A
Q
------------------
T
Q
T
T
N
L
A
--
V
V
A
P
G
I
A
------
E
A
L
L
A
T
A
I
G
L
V
A
A
I
P
A
V
V
I
Y
N
V
F
A
R
Q
I
G
G
F
K
A
M
L
G
D
V
A
A
Q
V
L
L
------------------------------------------------------------
24
HHSearch
70.41
32%
-33
- C5 -
-
5SV0
-
EXBB_ECOLI
A:
[10-230]
----------
L
S
V
W
G
M
Y
Q
H
--
A
D
I
V
V
K
C
V
M
I
G
L
--------
I
L
A
S
V
V
T
W
A
----
I
F
F
S
K
----
S
V
E
F
F
N
Q
K
--
R
R
L
K
R
E
Q
Q
L
L
A
E
AR
S
---
L
N
Q
A
------
N
D
--------
I
A
A
DFGSK
S
L
S
L
H
L
L
N
E
A
Q
N
E
L
E
L
S
EGS
D
-----------
D
NEGI-
E
-----------
R
T
S
F
R
-------------
L
E
R
---
R
V
A
A
V
G
R
Q
M
-----
G
R
G
N
G
Y
L
--------
A
T
I
G
A
I
S
P
F
V
G
L
F
G
T
V
W
G
I
M
N
---
S
F
I
G
I
A
Q
------------------
T
Q
T
T
N
L
A
--
V
V
A
P
G
I
A
------
E
A
L
L
A
T
A
I
G
L
V
A
A
I
P
A
V
V
I
Y
N
V
F
A
R
Q
I
G
G
F
K
A
M
L
G
D
V
A
A
Q
V
L
L
L
Q
S
R
D
L
D
L
E
A
S
A
------------------------------------------------
23
PsiBlast_CBE
70.36
33%
-56
- C5 -
-
5SV0
1
EXBB_ECOLI
C:
[16-218]
----------------
Y
Q
H
--
A
D
I
V
V
K
C
V
M
I
G
L
--------
I
L
A
S
V
V
T
W
A
----
I
F
F
S
K
SVEF
F
N
Q
K
R
R
L
K
RE
Q
Q
L
L
A
---------
E
ARS
L
N
Q
A
NDIAAD
F
G
--------
S
K
S
-----
L
S
L
H
L
L
N
E
------
A
-----
Q
-----------
N
----
E
L
-----------
E
L
S
E
G
SDDNEGIERTSFR
L
E
R
---
R
V
A
A
V
G
R
Q
M
-----
G
R
G
N
G
Y
L
--------
A
T
I
G
A
I
S
P
F
V
G
L
F
G
T
V
W
G
I
M
N
---
S
F
I
G
I
A
Q
------------------
T
Q
T
T
N
L
A
--
V
V
A
P
G
I
A
------
E
A
L
L
A
T
A
I
G
L
V
A
A
I
P
A
V
V
I
Y
N
V
F
A
R
Q
I
G
G
F
K
A
M
L
G
D
V
A
A
Q
V
L
L
------------------------------------------------------------
20
PsiBlast_CBE
70.27
33%
-57
- C5 -
-
5SV0
1
EXBB_ECOLI
F:
[16-218]
----------------
Y
Q
H
--
A
D
I
V
V
K
C
V
M
I
G
L
--------
I
L
A
S
V
V
T
W
A
----
I
F
F
S
K
SVEF
F
N
Q
K
R
R
L
K
RE
Q
Q
L
L
A
---------
E
ARS
L
N
Q
A
NDIAAD
F
G
--------
S
K
S
-----
L
S
L
H
L
L
N
E
------
A
-----
Q
-----------
N
----
E
L
-----------
E
L
S
E
G
SDDNEGIERTSFR
L
E
R
---
R
V
A
A
V
G
R
Q
M
-----
G
R
G
N
G
Y
L
--------
A
T
I
G
A
I
S
P
F
V
G
L
F
G
T
V
W
G
I
M
N
---
S
F
I
G
I
A
Q
------------------
T
Q
T
T
N
L
A
--
V
V
A
P
G
I
A
------
E
A
L
L
A
T
A
I
G
L
V
A
A
I
P
A
V
V
I
Y
N
V
F
A
R
Q
I
G
G
F
K
A
M
L
G
D
V
A
A
Q
V
L
L
------------------------------------------------------------
34
Fugue
69.12
33%
-54
- C5 -
-
5SV0
-
EXBB_ECOLI
A:
[2-234]
--GNNLM
Q
T
D
L
S
V
W
G
M
Y
Q
H
--
A
D
I
V
V
K
C
V
M
I
G
L
--------
I
L
A
S
V
V
T
W
A
----
I
F
F
S
K
S
V
E
F
F
N
Q
K
R
R
L
K
--
R
E
Q
Q
L
L
A
E
AR----
S
---
L
N
Q
A
------
N
D
I
A
A
DFGSK
S
L
S
-----
L
H
L
L
N
E
A
Q
------
N
-----
E
-----------
L
----
E
L
S
EGSDDNEGIE
R
T
S
F
R
-------------
L
E
R
---
R
V
A
A
V
G
R
Q
M
-----
G
R
G
N
G
Y
L
--------
A
T
I
G
A
I
S
P
F
V
G
L
F
G
T
V
W
G
I
M
N
---
S
F
I
G
I
A
Q
------------------
T
Q
T
T
N
L
A
--
V
V
A
P
G
I
A
------
E
A
L
L
A
T
A
I
G
L
V
A
A
I
P
A
V
V
I
Y
N
V
F
A
R
Q
I
G
G
F
K
A
M
L
G
D
V
A
A
Q
V
L
---
L
L
Q
S
R
D
L
D
L
E
A
S
A
----
A
A
H
P
-------------------------------------
18
PsiBlast_CBE
68.85
33%
-75
- C5 -
-
5SV0
1
EXBB_ECOLI
I:
[16-218]
----------------
Y
Q
H
--
A
D
I
V
V
K
C
V
M
I
G
L
--------
I
L
A
S
V
V
T
W
A
----
I
F
F
S
K
SVEF
F
N
Q
K
R
R
L
K
RE
Q
Q
L
L
A
---------
E
ARS
L
N
Q
A
NDIAAD
F
G
--------
S
K
S
-----
L
S
L
H
L
L
N
E
------
A
-----
Q
-----------
N
----
E
L
-----------
E
L
S
E
G
SDDNEGIERTSFR
L
E
R
---
R
V
A
A
V
G
R
Q
M
-----
G
R
G
N
G
Y
L
--------
A
T
I
G
A
I
S
P
F
V
G
L
F
G
T
V
W
G
I
M
N
---
S
F
I
G
I
A
Q
------------------
T
Q
T
T
N
L
A
--
V
V
A
P
G
I
A
------
E
A
L
L
A
T
A
I
G
L
V
A
A
I
P
A
V
V
I
Y
N
V
F
A
R
Q
I
G
G
F
K
A
M
L
G
D
V
A
A
Q
V
L
L
------------------------------------------------------------
17
PsiBlast_CBE
68.79
33%
-60
- C5 -
-
5SV0
1
EXBB_ECOLI
J:
[19-218]
---------------------
A
D
I
V
V
K
C
V
M
I
G
L
--------
I
L
A
S
V
V
T
W
A
----
I
F
F
S
K
SVEF
F
N
Q
K
R
R
L
K
RE
Q
Q
L
L
A
---------
E
ARS
L
N
Q
A
NDIAAD
F
G
--------
S
K
S
-----
L
S
L
H
L
L
N
E
------
A
-----
Q
-----------
N
----
E
L
-----------
E
L
S
E
G
SDDNEGIERTSFR
L
E
R
---
R
V
A
A
V
G
R
Q
M
-----
G
R
G
N
G
Y
L
--------
A
T
I
G
A
I
S
P
F
V
G
L
F
G
T
V
W
G
I
M
N
---
S
F
I
G
I
A
Q
------------------
T
Q
T
T
N
L
A
--
V
V
A
P
G
I
A
------
E
A
L
L
A
T
A
I
G
L
V
A
A
I
P
A
V
V
I
Y
N
V
F
A
R
Q
I
G
G
F
K
A
M
L
G
D
V
A
A
Q
V
L
L
------------------------------------------------------------
1
PsiBlast_PDB
68.72
33%
-36
- C5 -
-
5SV0
-
EXBB_ECOLI
B:
[16-218]
----------------
Y
Q
H
--
A
D
I
V
V
K
C
V
M
I
G
L
--------
I
L
A
S
V
V
T
W
A
----
I
F
F
S
K
S
V
E
F
F
N
Q
K
R
R
L
K
R
E
Q
Q
L
L
A
---------
E
ARS
L
N
Q
A
N
D
I
A
A
D
F
G
--------
S
K
S
-----
L
S
L
H
L
L
N
E
------
A
-----
Q
N
E
L
E
L
S
EGSDD
N
----
E
G
-----------
I
-
E
R
T
S
F
R
----------
L
E
R
---
R
V
A
A
V
G
R
Q
M
-----
G
R
G
N
G
Y
L
--------
A
T
I
G
A
I
S
P
F
V
G
L
F
G
T
V
W
G
I
M
N
---
S
F
I
G
I
A
Q
------------------
T
Q
T
T
N
L
A
--
V
V
A
P
G
I
A
------
E
A
L
L
A
T
A
I
G
L
V
A
A
I
P
A
V
V
I
Y
N
V
F
A
R
Q
I
G
G
F
K
A
M
L
G
D
V
A
A
Q
V
L
L
------------------------------------------------------------
21
PsiBlast_CBE
68.33
33%
-65
- C5 -
-
5SV0
1
EXBB_ECOLI
E:
[19-218]
---------------------
A
D
I
V
V
K
C
V
M
I
G
L
--------
I
L
A
S
V
V
T
W
A
----
I
F
F
S
K
SVEF
F
N
Q
K
R
R
L
K
RE
Q
Q
L
L
A
---------
E
ARS
L
N
Q
A
NDIAAD
F
G
--------
S
K
S
-----
L
S
L
H
L
L
N
E
------
A
-----
Q
-----------
N
----
E
L
-----------
E
L
S
E
G
SDDNEGIERTSFR
L
E
R
---
R
V
A
A
V
G
R
Q
M
-----
G
R
G
N
G
Y
L
--------
A
T
I
G
A
I
S
P
F
V
G
L
F
G
T
V
W
G
I
M
N
---
S
F
I
G
I
A
Q
------------------
T
Q
T
T
N
L
A
--
V
V
A
P
G
I
A
------
E
A
L
L
A
T
A
I
G
L
V
A
A
I
P
A
V
V
I
Y
N
V
F
A
R
Q
I
G
G
F
K
A
M
L
G
D
V
A
A
Q
V
L
L
------------------------------------------------------------
2
PsiBlast_PDB
68.02
33%
-32
- C5 -
-
5SV1
-
EXBB_ECOLI
A:
[16-218]
----------------
Y
Q
H
--
A
D
I
V
V
K
C
V
M
I
G
L
--------
I
L
A
S
V
V
T
W
A
----
I
F
F
S
K
S
V
E
F
F
N
Q
K
R
R
L
K
R
E
Q
Q
L
L
A
---------
E
ARS
L
N
Q
A
N
D
I
A
AD
F
G
--------
S
K
S
-----
L
S
L
H
L
L
N
E
------
A
-----
Q
N
E
L
E
L
S
EGSDD
N
----
E
G
-----------
I
-
E
R
T
S
F
R
----------
L
E
R
---
R
V
A
A
V
G
R
Q
M
-----
G
R
G
N
G
Y
L
--------
A
T
I
G
A
I
S
P
F
V
G
L
F
G
T
V
W
G
I
M
N
---
S
F
I
G
I
A
Q
------------------
T
Q
T
T
N
L
A
--
V
V
A
P
G
I
A
------
E
A
L
L
A
T
A
I
G
L
V
A
A
I
P
A
V
V
I
Y
N
V
F
A
R
Q
I
G
G
F
K
A
M
L
G
D
V
A
A
Q
V
L
L
------------------------------------------------------------
5
PsiBlast_PDB
47.54
25%
-80
- C5 -
-
1R2J
1
?
A:
[63-233]
------------------
H
--
V
G
S
L
C
S
S
L
R
S
V
M
--------
T
S
Q
G
M
A
A
W
T
----
V
Q
R
L
G
----
D
A
G
Q
R
---------
A
---------
T
---
F
L
K
E
------
L
T
--------
S
-------
G
-
L
A
A
V
G
F
------
S
-----
E
-----------
R
----
Q
A
-----------
G
S
D
L
S
-------------
A
M
R
T
R
V
R
L
D
G
D
T
A
V
V
-----
D
-
G
H
K
V
W
--------
T
T
A
A
A
Y
A
D
H
L
V
V
F
G
L
Q
E
D
G
S
G
---
A
V
V
V
V
P
A
DTPG
V
R
V
E
R
VPKPSGCRA
A
G
H
A
D
L
H
L
D
Q
V
R
V
P
A
G
------
A
V
L
A
G
S
G
A
S
L
P
M
L
V
A
A
S
L
A
Y
-----------------------------------------------------------------------------------
41
Fugue
43.22
15%
-71
- C3 -
-
5J1S
2
TOR1A_HUMAN
A:
[7-283]
SLS
R
E
A
L
Q
K
D
L
D
D
N
L
F
G
Q
H
L
A
K
K
I
I
L
N
A
V
F
G
F
I
N
NPKPKKP
L
T
L
S
L
H
G
W
T
GTG
K
N
F
V
S
K
----
I
I
A
E
N
I
Y
E
--
G
G
L
N
---------------
S
D
Y
------
V
H
--------
L
F
V
-----
A
T
L
H
-
F
P
H
------
A
-----
S
-----------
N
----
I
T
-----------
L
Y
K
D
Q
-------------
L
Q
L
---
W
I
R
G
N
V
S
A
C
-----
A
R
S
I
F
I
F
D
QMDKMH
A
G
L
I
D
A
I
K
P
F
L
D
Y
Y
D
L
V
D
G
V
S
Y
QK
A
M
F
I
F
L
S
N
------------------
A
G
A
E
R
I
T
--
D
V
A
L
D
F
W
R
S
GKQR
E
D
I
K
L
K
D
I
E
H
A
L
S
V
S
V
F
N
N
K
N
S
G
F
W
H
S
S
L
I
D
R
N
L
I
D
Y
F
V
P
F
L
P
L
E
Y
K
H
L
K
M
C
I
R
V
E
M
Q
S
R
GY
E
I
D
E
D
I
V
S
R
V
A
E
E
M
T
F
F
PKEERVFSDKGCKT
V
F
T
K
L
D
Y
Y
Y
D
35
Fugue
36.55
27%
-27
- C5 -
-
3HE5
-
?
A:
[0-46]
-------------------------------------------------------------------------
S
N
L
V
A
---------
Q
---
L
E
N
E
------
V
A
--------
S
L
E
-----
N
E
N
E
T
L
--------------
K
-----------
K
----
K
N
-----------
L
H
K
K
D
-------------
L
I
A
---
Y
L
E
K
E
I
A
N
L
-----
R
K
K
I
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
35.66
32%
-246
- C5 -
-
1M45
-
B:
[1-25]
---------------------------------------------------------------------------------------
Q
---
I
S
Q
A
------
I
K
--------
Y
L
Q
-----
N
N
I
K
G
F
I
I
------
R
-----
Q
-----------
R
----
V
N
-----------
D
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
34.70
20%
-128
- C5 -
-
1OV9
-
?
A:
[2-46]
---------------------------------------------------------------------------
E
I
T
---------
K
---
T
L
L
N
------
I
R
--------
S
L
R
-----
A
Y
A
R
E
L
T
I
------
E
-----
Q
-----------
L
----
E
E
-----------
A
L
D
K
L
-------------
T
T
V
---
V
Q
E
R
K
E
A
E
A
-----
E
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
34.27
19%
-83
- C5 -
-
1VDF
-
COMP_RAT
A:
[1-46]
-------------------------------------------------------------------------
M
D
L
A
P
---------
Q
---
M
L
R
E
------
L
Q
--------
E
T
N
-----
A
A
L
Q
D
V
R
E
------
L
-----
L
-----------
R
----
Q
Q
-----------
V
K
E
I
T
-------------
F
L
K
---
N
T
V
M
E
C
D
A
C
-----
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
30.52
30%
-36
* C4 *
-
1NSM
1
?
A:
[224-308]
---------------------------------------------------------------------------------------
Q
---
L
S
N
A
------
F
N
--------
S
N
M
-----
E
Q
V
Q
L
V
-------------------------------
K
G
-----------
I
A
H
P
F
-------------
L
L
D
---
Q
L
G
L
D
K
E
Q
A
R
L
T
L
D
D
T
S
I
S
V
F
--------
T
D
Q
P
S
I
V
I
F
T
A
N
F
G
D
L
G
T
L
Y
H
---
E
K
K
Q
V
H
H
------------------
G
G
I
T
F
E
C
--
Q
V
S
-----------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
30.06
30%
-36
- C4 -
-
1NSS
1
?
A:
[224-308]
---------------------------------------------------------------------------------------
Q
---
L
S
N
A
------
F
N
--------
S
N
M
-----
E
Q
V
Q
L
V
-------------------------------
K
G
-----------
I
A
H
P
F
-------------
L
L
D
---
Q
L
G
L
D
K
E
Q
A
R
L
T
L
D
D
T
S
I
S
V
F
--------
T
D
Q
P
S
I
V
I
F
T
A
N
F
G
D
L
G
T
L
Y
H
---
E
K
K
Q
V
H
H
------------------
G
G
I
T
F
E
C
--
Q
V
S
-----------------------------------------------------------------------------------------------------------------
33
HHSearch
29.53
50%
-
- C1 -
-
1Q90
2
PETG_CHLRE
G:
[17-24]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
A
G
L
F
V
T
------------------------------------------------------------------------------------------