@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VL87: (2017-11-01 )
MKTVGNDLVRNQLHADRKWYLILGFVLIIFGLVLFSSLPFATFSVVFLFGILMMVGGVLHLIAALSVFKGGSRWLWALFGVLYLMAGYYAFSTPVTTAVVLTSLLSIALIIAGVIRTINAFLLRPIAGWGWTLFSGLLTLATGILILVSKDSPFWVLGMFLAVDILFQGINFLGLASAIKHLPSSSKTVS
Atome Classification :
(20 SA)
----------------------------------.........--10........20....-------....30........40.....--------.-..50........---60........70--.........------80.-.----------..-----....90.......-.----100.......110.......120....-...130----.........140--.-.......150.......160....--...----170........180......-.190---------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------MKT
V
G
N
D
L
V
--
R
N
Q
LHAD
R
K
W
Y
L
I
L
G
F
-------
V
L
I
I
F
G
L
V
L
F
SSL
P
F
A
T
F
S
V
V
--------
F
-
L
F
G
I
L
M
M
V
G
G
V
L
---
H
L
I
A
A
L
S
V
FKG---G
S
R
W
L
W
A
L
F
------
G
V
L
-
Y
----------
L
M
-----
A
G
Y
Y
AFST
P
V
T
T
A
-
V
----
V
L
T
S
L
L
S
I
A
L
I
I
A
G
V
I
R
T
I
N
A
F
L
LRPI-AGW
G
------
W
T
L
F
S
G
L
L
T
L
A---T-
G
I
L
I
L
V
SKDS
P
F
W
V
L
G
M
F
L
A
V
D
I
L
--
F
Q
G
----
I
N
-
F
L
G
L
A
S
A
I
K
HLPSSSKT-VS-----------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
78.19
23%
-
- C3 -
-
4IU9
-
NARU_ECOLI
B:
[49-161]
------------------------------------------------------------------------------------------------------------------------------------
V
W
M
L
F
------
S
A
V
-
T
----------
V
N
-----
L
N
K
I
G
F
N
F
T
T
D
Q
L
-
F
----
L
L
T
A
L
P
S
V
S
---
G
A
L
L
R
V
P
Y
S
F
M
V
P
I
F
-
G
G
R
R
------
W
T
V
F
S
T
A
I
L
I
I
---
P
-
C
V
W
L
G
I
A
V
Q
N
P
N
T
P
F
G
I
F
I
V
I
A
L
L
C
G
F
A
G
----
A
N
-
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
71.41
15%
-
- C1 -
-
4MT7
-
ARHG9_RAT
A:
[45-381]
--Q
N
R
D
Q
M
R
A
N
V
I
N
E
I
M
S
T
E
R
H
Y
I
K
H
L
K
D
I
C
E
G
Y
L
K
Q
C
R
K
-----
R
R
D
M
F
S
D
E
Q
L
K
V
I
F
G
N
-------
I
E
D
I
Y
R
F
Q
M
G
F
V
R
D
L
E
K
-------------------
Q
Y
N
N
D
D
P
---
H
L
S
E
I
G
P
C
F
L
E
---
H
Q
D
G
F
W
I
Y
S
------
E
Y
C
N
N
----------
H
L
-----
D
A
C
M
E
L
S
K
L
M
K
D
S
-
R
----
Y
Q
H
F
F
E
A
C
R
L
L
Q
Q
M
I
D
I
A
I
D
G
F
L
L
T
P
V
-
Q
----------
K
I
C
K
Y
P
L
Q
L
A
---
E
--
L
L
K
Y
T
A
Q
D
H
S
-----------------------
D
-
Y
R
Y
V
A
A
A
L
A
V
M
R
N
V
T
Q
Q
-
I
N
E
R
K
RRLEN
I
D
K
I
A
Q
W
Q
A
S
VLDWEGDDILDRSSELI
Y
T
G
E
M
A
W
I
YQPY
G
R
N
Q
Q
R
V
F
F
L
F
DH
Q
M
V
L
C
K
K
DLIRRD
I
L
Y
Y
KGRIDMDK
Y
E
V
I
D
I
E
D
G
RDDDF
N
V
S
M
K
N
A
F
K
L
H
N
KETE
E
V
H
L
F
F
A
KK
L
E
E
K
I
R
W
L
R
A
F
R
E
E
R
K
M
V
Q
E
D
E
K
I
G
26
Fugue
67.68
15%
-116
- C1 -
-
3HL6
-
?
A:
[2-214]
---------------------------------------------
D
I
E
T
I
V
N
E
F
E
T
R
A
G
T
L
-------
L
R
Y
Y
T
G
L
L
E
R
S
K
V
Q
P
C
C
F
K
L
Y
--------
N
D
P
F
D
M
V
Y
V
M
M
N
-
S
---
K
L
F
S
H
V
Y
I
K
D
C
---
K
V
R
Q
S
F
E
L
A
SPKHT
E
G
L
I
-
R
----------
S
I
-----
E
G
H
Y
V
G
Y
E
L
H
D
G
K
-
Q
----
L
S
I
S
D
M
M
A
S
Q
L
F
E
------
D
E
Y
F
M
Y
G
L
-
Q
T
Y
Q
SSNTD
V
I
A
N
I
E
M
L
Y
Q
L
A
---
T
-
G
I
----
N
E
P
V
P
E
L
V
E
G
L
K
L
V
T
E
F
V
--
Q
D
E
NAT
Q
E
D
-
Y
K
A
L
E
R
K
L
N
D
L
K
A
S
Y
Y
S
-
L
S
KL---------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
63.71
23%
-260
- C3 -
-
4IU8
-
NARU_ECOLI
A:
[49-166]
------------------------------------------------------------------------------------------------------------------------------------
V
W
M
L
F
------
S
A
V
-
T
----------
V
N
-----
L
N
K
I
G
F
N
F
T
T
D
Q
L
-
F
----
L
L
T
A
L
P
S
V
S
---
G
A
L
L
R
V
P
Y
S
F
M
V
P
I
F
-
G
G
R
R
------
W
T
V
F
S
T
A
I
L
I
I
---
P
-
C
V
W
L
G
I
A
V
Q
N
P
N
T
P
F
G
I
F
I
V
I
A
L
L
C
G
F
A
G
----
A
N
-
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
60.29
18%
-104
* C2 *
-
2HO9
-
CHEW_ECOLI
A:
[1-167]
----------------------------------
M
T
G
M
T
N
V
-
T
--
K
L
A
S
E
P
S
G
Q
E
F
L
V
F
T
L
-------
G
D
E
E
Y
G
I
D
I
L
K
V
Q
E
I
R
G
Y
D
Q
V
TRIANTPA
F
-
I
K
G
V
T
N
L
R
G
V
I
V
---
P
I
V
D
L
R
I
K
F
S
Q
---
V
D
V
D
Y
N
D
N
T
------
V
V
I
-
V
----------
L
N
-----
L
G
------
Q
R
V
V
G
-
I
----
V
V
D
G
V
S
D
V
L
S
L
T
A
E
Q
I
R
P
A
P
E
F
A
-----
V
T
L
S
------
T
E
Y
L
T
G
L
G
A
L
G
---
D
-
R
M
L
I
L
V
N
--------------------------
I
E
-
K
L
L
N
S
E
E
M
A
L
L
D
S
A
A
S
E
-
V
A
-----------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
53.30
13%
-68
- C1 -
-
4I17
1
?
A:
[4-226]
----------------------------TTD
P
N
Q
L
K
N
E
G
N
D
A
L
N
A
K
N
Y
A
V
A
F
E
K
Y
S
E
Y
L
K
L
T
NNQD
S
V
T
A
Y
N
C
G
V
C
A
D
N
I
K
K
Y
K
E
A
A
D
Y
--------
F
-
D
I
A
I
K
K
N
Y
N
L
A
N
---
A
Y
I
G
K
S
A
A
Y
R
D
M
KN
N
Q
E
Y
I
A
T
L
T
------
E
G
I
-
K
A
VPGN
A
T
I
E
K
L
Y
-----
A
I
Y
Y
L
K
E
G
Q
K
F
Q
Q
-
A
----
G
N
I
E
K
A
E
E
N
Y
K
H
A
T
D
V
T
S
-
K
K
W
K
T
D
A
L
-
Y
S
L
G
------
V
L
F
Y
N
N
G
A
D
V
L
---
R
-
K
A
T
P
L
A
S
S
N
K
E
K
Y
A
S
E
K
A
K
A
D
A
A
F
--
K
K
A
----
V
D
-
Y
L
G
E
A
V
T
L
S
P
N
R
T
E
I
K
Q
M
Q
D
Q
V
K
A
M
I-----------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
51.80
32%
-246
- C3 -
-
5M8A
-
?
A:
[276-346]
-------------------------------------------------------------------------------------------------------
L
A
M
V
V
N
A
L
---
L
L
I
M
G
V
A
V
F
K
S
---
G
A
V
Q
D
P
S
F
F
------
G
L
Y
-
Q
----------
A
L
-----
S
N
P
D
M
V
S
N
P
V
L
A
E
-
A
A
R
S
G
V
L
S
T
L
F
A
V
A
L
L
A
S
G
Q
N
S
T
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
51.74
32%
-244
* C3 *
-
5M8J
-
?
A:
[276-346]
-------------------------------------------------------------------------------------------------------
L
A
M
V
V
N
A
L
---
L
L
I
M
G
V
A
V
F
K
S
---
G
A
V
Q
D
P
S
F
F
------
G
L
Y
-
Q
----------
A
L
-----
S
N
P
D
M
V
S
N
P
V
L
A
E
-
A
A
R
S
G
V
L
S
T
L
F
A
V
A
L
L
A
S
G
Q
N
S
T
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
50.70
32%
-246
- C3 -
-
5M8K
-
?
A:
[276-346]
-------------------------------------------------------------------------------------------------------
L
A
M
V
V
N
A
L
---
L
L
I
M
G
V
A
V
F
K
S
---
G
A
V
Q
D
P
S
F
F
------
G
L
Y
-
Q
----------
A
L
-----
S
N
P
D
M
V
S
N
P
V
L
A
E
-
A
A
R
S
G
V
L
S
T
L
F
A
V
A
L
L
A
S
G
Q
N
S
T
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
50.14
32%
-244
- C3 -
-
5M87
-
?
A:
[276-346]
-------------------------------------------------------------------------------------------------------
L
A
M
V
V
N
A
L
---
L
L
I
M
G
V
A
V
F
K
S
---
G
A
V
Q
D
P
S
F
F
------
G
L
Y
-
Q
----------
A
L
-----
S
N
P
D
M
V
S
N
P
V
L
A
E
-
A
A
R
S
G
V
L
S
T
L
F
A
V
A
L
L
A
S
G
Q
N
S
T
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
45.44
12%
-99
- C1 -
-
2H7O
-
YPKA_YERPS
A:
[439-731]
RIT
P
K
K
L
R
E
L
S
D
L
L
R
T
H
L
S
S
A
A
T
KQLD
M
G
G
V
L
S
D
L
D
T
M
L
V
A
L
D
--
K
A
E
R
E
V
D
K
D
Q
L
K
S
F
N
--------
S
L
I
L
K
T
Y
R
V
I
E
D
Y
V
K
G
N
F
M
L
S
--------
I
-
V
E
P
S
L
Q
R
I
Q
K
H
L
D
Q
T
H
S
F
S
D
I
G
S
L
V
R
---
A
H
K
H
L
E
T
L
L
------
E
V
L
-
V
----------
T
L
S
QPVS
S
E
T
Y
G
F
L
N
R
L
A
E
A
K
I
----
T
L
S
Q
Q
L
N
T
L
Q
Q
Q
Q
E
S
A
K
A
Q
L
S
I
L
I
N
R
S
-
G
S
W
A
------
D
V
A
R
Q
S
L
Q
R
F
D
---
S
T
R
P
V
V
K
F
G
T
E
Q
Y
T
A
I
H
R
Q
M
M
A
A
H
A
A
--
I
T
L
----
Q
E
-
V
S
E
F
T
D
D
M
R
N
F
T
V
D
S
I
P
-
L
L
I
Q
L
GRSSLMD
E
H
L
V
E
Q
R
E
K
L
R
E
L
T
T
I
A
E
R
L
N
R
L
E
R
E
W----------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
43.78
32%
-217
- C3 -
-
2GT3
-
MSRA_ECOLI
A:
[20-81]
------------------------------------------------------------------------------
T
P
M
P
V
A
T
L
H
A
V
--------
N
-
G
H
S
M
T
N
V
P
D
G
M
E
---
I
A
I
F
A
M
G
C
F
W
G
---
V
E
R
L
F
W
Q
L
P
------
G
V
Y
-
S
----------
T
A
-----
A
G
Y
T
G
G
Y
T
P
N
P
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
41.31
30%
-193
- C3 -
-
2IEM
-
MSRA_ECOLI
A:
[20-87]
------------------------------------------------------------------------------
T
P
M
P
V
A
T
L
H
A
V
--------
N
-
G
H
S
M
T
N
V
P
D
G
M
E
---
I
A
I
F
A
M
G
C
F
W
G
---
V
E
R
L
F
W
Q
L
P
------
G
V
Y
-
S
----------
T
A
-----
A
G
Y
T
G
G
Y
T
P
N
P
T
Y
-
R
----
E
V
S
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
39.55
10%
-107
- C1 -
-
4IY4
-
CNNM2_HUMAN
A:
[429-580]
----------------------------------------
K
E
E
--
L
N
I
I
Q
G
A
L
E
-----------------------
L
R
T
K
T
V
E
D
V
M
T
P
--------
L
-
R
D
C
F
M
I
T
G
E
A
I
L
---
D
F
N
T
M
S
E
I
M
E
S
---
G
Y
T
---------------------------
R
I
-----
P
V
F
E
G
E
R
S
N
I
V
D
L
-
L
----
F
V
K
D
L
A
F
V
D
P
D
D
C
T
P
L
K
T
I
T
K
F
Y
N
H
P
L
H
F
V
F
N
------
D
T
K
L
D
A
M
L
E
E
F
K
K
G
K
-
S
H
L
A
I
V
Q
R
V
N
N
E
G
------
E
G
D
P
F
--
Y
E
V
----
L
G
-
I
V
I
L
E
D
V
I
E
E
I
I
K
S
E
----------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
37.94
20%
-117
- C3 -
-
2MPN
-
YGAP_ECOLI
A:
[106-173]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
Q
P
L
-
P
L
M
R
------
Q
V
Q
I
A
A
G
G
L
I
L
---
I
-
G
V
V
L
G
Y
T
V
N
S
G
F
F
L
L
S
G
F
V
G
A
G
L
L
--
F
A
G
----
I
S
G
F
S
G
M
A
R
L
L
D
K
M
P
W
N
Q
R
A
--------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
35.57
14%
-231
- C3 -
-
2N1P
-
?
A:
[7-28]
----------------------------------------------------
R
P
R
W
F
W
F
S
L
-------
L
L
L
A
A
G
V
G
I
Y
L
L
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
32.83
19%
-542
- C3 -
-
4XE5
1
ATNG_BOVIN
G:
[24-39]
---------------------------------------------------------------------------------------------------
I
F
A
A
L
A
F
I
V
G
L
V
---
I
I
L
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
26.69
14%
-249
- C3 -
-
2MPN
-
YGAP_ECOLI
A:
[113-156]
---------------------------------------------------
M
R
Q
V
Q
I
A
A
G
G
-------
L
I
L
I
G
V
V
L
G
Y
T
V
-
N
S
G
F
F
L
L
S
--------
G
-
F
V
G
A
G
L
L
F
A
G
I
S
---
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
24.09
14%
-52
- C3 -
-
5I20
1
?
E:
[120-140]
-------------------------------------------------------
A
H
V
A
G
A
-------
L
M
G
L
A
G
T
V
V
L
L
G
A
R
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
21.70
41%
112
- C2 -
-
1WBR
2
?
?:
[1-17]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
E
R
M
S
Q
I
K
R
L
L
S
E
K
K
T
--------------------------------------------------------------------------------------------------------------------------------------------------------