@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VL93: (2017-11-01 )
MTKPPYHDDQASFSAPIEDLQVRIAFLDDLVEELNQQLAIQTLEIADLKKQMQLLYQRVESADLSEGVAPFDPLTNKPPHY
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.....-...20---.........30..------......40.......---.50........60.-----..--.....70..-------......80--
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTKPPYHDDQASFSA
P
-
I
E
D
L
----
Q
V
R
I
A
F
L
D
D
L
V
E
E
------
L
N
Q
Q
L
A
I
Q
T
L
E
I
A
D
L
---
K
K
Q
M
Q
L
L
Y
Q
R
V
E
S
A-----DL--SEGVAPFDP-------LTNKPPHY--
26
Fugue
69.96
27%
-355
- C2 -
-
4CGB
-
EMAL2_HUMAN
A:
[5-48]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
D
D
R
V
S
A
------
L
E
Q
R
L
Q
L
Q
E
D
E
L
A
V
L
---
K
A
A
L
A
D
A
L
R
R
L
R
A
C
-----
E
E
--
Q
G
A
A
L
---------------------
1
PsiBlast_PDB
68.98
32%
-68
- C2 -
-
5NNV
-
?
A:
[26-123]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
-
I
E
D
T
----
R
D
K
I
Q
A
L
D
E
S
V
D
E
------
L
Q
Q
V
L
L
V
T
S
E
E
L
E
K
L
---
E
G
R
K
E
V
L
K
E
R
K
K
N
A
V
Q
N
Q
E
Q
L
--
E
E
A
I
V
Q
F
-------------------
13
HHSearch
63.20
17%
-
- C- -
-
5DOL
-
YABA_BACSU
B:
[5-58]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
F
D
T
-
V
I
N
L
----
E
E
Q
I
G
S
L
Y
R
Q
L
G
D
------
L
K
Q
H
I
G
E
M
I
E
E
N
H
H
L
---
Q
L
E
N
K
H
L
R
K
R
L
D
D
T
-----
T
Q
--
Q
-------------------------
4
PsiBlast_PDB
59.86
44%
-167
- C2 -
-
5K18
-
?
A:
[282-314]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
------
L
D
Q
K
L
T
L
P
T
R
N
I
S
L
L
---
K
I
E
L
D
I
L
Y
S
R
---------------------------------------
17
HHSearch
58.20
22%
-256
- C2 -
-
1JUN
-
B:
[3-38]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
-
I
A
R
L
----
E
E
K
V
K
T
L
K
A
Q
N
S
E
------
L
A
S
T
A
N
M
L
R
E
Q
V
A
Q
L
---
K
Q
-----------------------------------------------
32
Fugue
57.79
18%
-21
- C2 -
-
1X59
-
SYHC_HUMAN
A:
[1-73]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
S
G
S
S
G
M
A
E
-
R
A
A
L
----
E
E
L
V
K
L
Q
G
E
R
V
R
G
------
L
K
Q
Q
K
A
----
S
A
E
L
I
---
E
E
E
V
A
K
L
L
K
L
K
A
Q
L
-----
G
P
--
D
E
S
K
Q
K
F
V
L
-------
K
T
P
K
S
G
P
S
SG
8
HHSearch
56.46
25%
20
- C2 -
-
3HE5
-
?
E:
[3-46]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
Q
L
----
E
N
E
V
A
S
L
E
N
E
N
E
T
------
L
K
K
K
N
L
H
K
K
D
L
I
A
Y
L
---
E
K
E
I
A
N
L
R
K
K
I
E
-------------------------------------
24
HHSearch
56.18
12%
-
- C2 -
-
4H22
-
LRRF1_HUMAN
C:
[187-243]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
F
M
Y
Q
V
D
T
L
K
D
M
-
L
L
E
L
----
E
E
Q
L
A
E
S
R
R
Q
Y
E
E
------
K
N
K
E
F
E
R
E
K
H
A
H
S
I
L
---
Q
F
Q
F
A
E
V
K
E
A
L
K
Q
------------------------------------
25
HHSearch
55.99
12%
-
- C2 -
-
4H22
-
LRRF1_HUMAN
B:
[187-244]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
F
M
Y
Q
V
D
T
L
K
D
M
-
L
L
E
L
----
E
E
Q
L
A
E
S
R
R
Q
Y
E
E
------
K
N
K
E
F
E
R
E
K
H
A
H
S
I
L
---
Q
F
Q
F
A
E
V
K
E
A
L
K
Q
R
-----------------------------------
7
HHSearch
54.27
25%
121
- C2 -
-
3HE5
-
?
C:
[3-46]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
Q
L
----
E
N
E
V
A
S
L
E
N
E
N
E
T
------
L
K
K
K
N
L
H
K
K
D
L
I
A
Y
L
---
E
K
E
I
A
N
L
R
K
K
I
E
-------------------------------------
3
PsiBlast_PDB
53.87
44%
-170
- C2 -
-
5K04
-
?
A:
[266-295]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
------
L
D
Q
K
L
T
L
P
T
R
N
I
S
L
L
---
K
I
E
L
D
I
L
Y
S
R
---------------------------------------
29
Fugue
53.24
12%
-33
- C2 -
-
2JS5
-
?
A:
[1-71]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
E
G
A
E
E
L
K
A
K
-
L
K
K
L
----
N
A
Q
A
T
A
L
K
M
D
L
H
D
------
L
A
E
D
L
P
T
G
W
N
R
I
M
E
V
---
A
E
K
T
Y
E
A
Y
R
Q
L
D
E
F
-----
R
K
--
S
T
A
S
L
E
------------
H
H
H
H
H
H
--
5
PsiBlast_PDB
52.78
26%
172
- C2 -
-
1YIG
-
MARE1_HUMAN
A:
[190-241]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
E
A
A
E
------
L
M
Q
Q
V
N
V
L
K
L
T
V
E
D
L
---
E
K
E
R
D
F
Y
F
G
K
L
R
N
I
-----
E
L
I
C
Q
E
N
E
G
E
N
D
P
-------
V
L
Q
R
------
35
Fugue
51.58
20%
-12
- C2 -
-
5K0P
1
?
A:
[6-108]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KSPS
L
V
R
L
K
T
R
G
E
S
V
C
P
I
S
K
T
V
D
S
F
E
V
S
-
V
E
Y
I
P
RGA
V
L
A
I
E
E
F
K
K
M
V
D
S
YRG
R
E
I
L
H
E
E
L
A
V
D
L
L
E
K
V
K
A
---
A
V
N
P
P
Y
V
K
V
T
V
K
S
Y
-----
Y
I
--
G
V
E
V
E
V
V
A
E
-------
S
G
G
V
P
P
V
Y
--
31
Fugue
51.45
15%
39
- C2 -
-
5D3A
1
KI21A_HUMAN
A:
[1-82]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GS
M
T
I
S
N
M
E
A
D
M
N
R
L
L
K
Q
-
R
E
E
L
----
T
K
R
R
E
K
L
S
K
R
R
E
K
------
I
V
K
E
N
G
E
G
D
K
N
V
A
N
I
---
N
E
E
M
E
S
L
T
A
N
I
D
Y
I
-----
N
D
--
S
I
S
D
C
Q
A
N
I
-------
M
Q
M
E
E
A
K
---
12
HHSearch
49.10
22%
52
- C2 -
-
2WZ7
1
CPOB_ECOLI
E:
[3-51]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
E
D
R
-
V
T
Q
L
----
E
R
I
S
N
A
H
S
Q
L
L
T
Q
------
L
Q
Q
Q
L
S
D
N
Q
S
D
I
D
S
L
---
R
G
Q
I
Q
E
N
Q
Y
Q
L
N
-------------------------------------
20
HHSearch
47.05
24%
-195
- C2 -
-
2PNV
-
KCNN2_RAT
B:
[489-522]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
M
Y
D
M
I
S
D
L
N
E
R
-
S
E
D
F
----
E
K
R
I
V
T
L
E
T
K
L
E
T
------
L
I
G
S
I
--------------------------------------------------------------
2
PsiBlast_PDB
46.98
36%
9
- C2 -
-
2J5U
-
MREC_LISMO
A:
[79-119]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
E
------
R
L
E
E
L
A
Q
L
E
S
E
V
A
D
L
---
K
K
E
N
K
D
L
K
---
E
S
L
-----
D
I
--
T
D
S
I
R
D
Y
D
P
-------
L
---------
30
Fugue
46.61
13%
215
- C2 -
-
4GKW
-
SAS6_CAEEL
A:
[250-407]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EDKED
E
V
A
D
L
K
Q
D
T
E
S
L
Q
K
Q
L
E
E
N
Q
E
E
L
E
I
V
G
N
M
L
R
E
E
Q
G
K
V
D
Q
L
Q
K
R
N
V
A
H
Q
K
E
I
G
K
L
R
A
E
L
G
T
A
Q
R
N
L
E
K
A
D
Q
L
L
K
R
N
S
Q
Q
Q
N
Q
Q
S
L
D
M
R
K
L
G
E
L
----
E
A
D
L
K
E
K
D
S
M
V
E
S
------
L
T
E
T
I
G
I
L
R
K
E
L
E
N
E
---
K
L
K
A
A
E
N
M
D
S
F
E
K
L
-----
S
M
--
E
N
E
N
L
K
E
K
I
-------
A
H
Y
R
A
Q
R
F
--
28
Fugue
44.83
25%
46
- C2 -
-
1ZR6
3
?
A:
[3-481]
EAEFN
S
I
N
A
C
L
A
A
A
D
V
E
F
H
E
EDS
E
G
W
D
M
D
G
TAFNLRV
D
Y
D
P
A
A
I
A
I
P
RS
T
E
D
I
A
A
A
V
Q
C
G
L
D
A
G
V
Q
I
S
A
K
G
GGHSYGSYGFGGEDGHLMLELDRM
Y
R
V
S
V
D
DNN
V
A
T
I
Q
GGAR
L
G
Y
T
A
L
E
L
L
D
Q
GN
R
A
L
S
H
G
TCPAVG
V
G
G
H
V
L
G
G
G
Y
G
FATHTHGLTLDWLI
G
A
T
V
V
L
ADA
S
I
V
H
V
S
ETEN
A
D
L
F
W
A
L
R
G
GGGGFAIVS
E
F
E
F
N
T
F
EAPE
I
I
T
T
Y
Q
V
T
T
TWN
R
K
Q
H
V
A
G
L
K
A
L
Q
D
W
A
Q
NTMPRE
L
S
M
R
L
E
I
N
AN
A
L
N
W
E
G
N
F
FGN
A
K
D
L
K
K
I
L
Q
P
I
M
K
K
A
GGKSTIS
K
L
V
E
T
D
W
Y
G
Q
I
N
T
Y
LYGADLNITYN
Y
D
V
H
E
Y
F
Y
A
N
S
L
T
A
P
RLS
D
E
A
I
Q
A
F
V
D
Y
K
F
DNSSVRPG
R
G
W
W
I
Q
WDFHGGKNSALAAVSNDETAYAHRDQL
W
L
W
Q
F
Y
D
S
I
YDYE
N
N
T
S
P
Y
---------
P
-
E
S
G
F
----
E
F
M
Q
G
F
V
A
T
I
E
D
T
------
L
P
E
D
R
K
G
K
Y
F
N
Y
A
D
T
TLT
K
E
E
A
Q
K
L
Y
W
R
G
N
L
E
-----
K
L
--
Q
A
I
K
A
K
Y
D
P
EDVFGNV
V
S
V
E
P
I
A
Y
--