@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VLD5: (2017-11-01 )
MSQASPVYQGSCLCQGIRYEIKGDIGDIIQCHCQRCRKSNGTAFATNAPINSADFKITQGEDLIKKFAVNGVYRWFCSECGSPLISSRDAQPELYRLRIGTLDTPLDQKPTMHIFAASKAEWECIHDDLPQYDERP
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------.........10.-----.--..--..-------...20--------------.--..--.....30.--.......40........50-----.....----...60--...-......-70.--.-------------.---..--....80...---...----..--90---..--...-----..-------------..100....-...110.......120.........130....-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------MSQASPVYQG-
S
-----
C
--LC--QG-------
I
R
Y
E
I
--------------K--GD--
I
G
D
I
I
Q
C
H
--
C
Q
R
C
R
KSNG
T
A
F
ATNAPIN-----SA
D
F
K
----ITQ
G
---
E
D
L
-
I
K
K
F
A
V
-
N
-
G
--
V
-------------
Y
---
R
W
--
F
C
S
ECGSPL---ISS----RD--A----Q
P
--
E
L
Y
-----
R
L
-------------
R
IGTLDTPL-DQKP
T
M
H
I
F
AASKA--
E
W
E
C
IHDDLPQYDERP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
54.90
21%
-5
- C6 -
-
3FAC
-
?
F:
[1-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
G
-
T
-----
C
--
H
C
--
G
A
-------
V
E
I
E
V
--------------
E
--
L
L
NG
F
A
D
A
R
R
C
D
--
C
S
F
C
R
R
R
G
A
I
A
----
A
T
A
R
-----
L
S
D
L
R
----
V
V
R
G
---
A
E
N
-
L
T
L
Y
Q
F
G
T
R
T
--
A
-------------
K
---
H
W
--
F
C
R
T
C
G
I
Y
T
---
H
H
Q
----
R
R
--
S
----
N
P
--
E
E
Y
-----
G
V
-------------
N
V
A
I
L
E
G
V
N
-
P
R
D
L
G
E
V
P
W
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
54.58
26%
5
* C6 *
-
3FAC
-
?
A:
[2-96]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
-
T
-----
C
--
H
C
--
G
A
-------
V
E
I
E
V
--------------
E
L
L
N
G
--
F
A
D
A
R
R
C
D
--
C
S
F
C
R
R
R
G
A
I
A
----
A
T
A
R
-----
L
S
D
L
R
----
V
V
R
G
A--
E
N
L
T
L
Y
Q
F
G
T
-
R
-
T
--
A
-------------
K
---
H
W
--
F
C
R
T
C
G
I
Y
T
---
H
H
Q
----
R
R
--
S
----
N
P
--
E
E
Y
-----
G
V
-------------
N
V
A
I
L
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
Fugue
53.44
21%
4
- C6 -
-
3FAC
-
?
A:
[1-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
G
-
T
-----
C
--
H
C
--
G
A
-------
V
E
I
E
V
--------------
E
L
L
N
G
--
F
A
D
A
R
R
C
D
--
C
S
F
C
R
R
R
G
----
A
I
A
A
T
A
R
-----
L
S
D
L
R
----
V
V
R
G
---
A
E
N
-
L
T
L
Y
Q
F
-
G
-
T
RT
A
-------------
K
---
H
W
--
F
C
R
T
C
G
I
Y
T
---
H
H
Q
----
R
R
--
S
----
N
P
--
E
E
Y
-----
G
V
-------------
N
V
A
I
L
E
G
V
N
-
P
R
D
L
G
E
V
P
W
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
51.88
16%
12
- C6 -
-
1X6M
3
GFA_PARDE
B:
[24-158]
------------------------------------------------------------------------------------------------------------------------------------------------------------
P
G
F
A
G
G
T
L
-
H
-----
C
--
K
C
ST
N
P
-------
V
R
V
A
V
--------------
R
--
A
Q
--
T
A
H
N
H
V
C
G
--
C
T
K
C
W
K
P
E
G
A
I
F
S
Q
V
A
V
V
G
-----
R
D
A
L
E
----
V
L
E
G
---
A
E
K
-
L
E
I
V
N
A
-
E
A
P
--
I
-------------
Q
---
R
H
--
R
C
R
D
C
G
V
H
M
---
Y
G
R
----
I
E
--
N
RDHP
F
Y
--
G
L
D
-----
F
V
-------------
H
T
E
L
S
D
E
D
G
-
W
S
A
P
E
F
A
A
F
V
S
S
I
I
--
E
S
G
V
D
P
S
R
M
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
50.66
16%
17
- C6 -
-
1XA8
-
GFA_PARDE
A:
[24-158]
------------------------------------------------------------------------------------------------------------------------------------------------------------
P
G
F
A
G
G
T
L
-
H
-----
C
--
K
C
ST
N
P
-------
V
R
V
A
V
--------------
R
--
A
Q
--
T
A
H
N
H
V
C
G
--
C
T
K
C
W
K
P
E
G
A
I
F
S
Q
V
A
V
V
G
-----
R
D
A
L
E
----
V
L
E
G
---
A
E
K
-
L
E
I
V
N
A
-
E
A
P
--
I
-------------
Q
---
R
H
--
R
C
R
D
C
G
V
H
M
---
Y
G
R
----
I
E
--
N
RDHP
F
Y
--
G
L
D
-----
F
V
-------------
H
T
E
L
S
D
E
D
G
-
W
S
A
P
E
F
A
A
F
V
S
S
I
I
--
E
S
G
V
D
P
S
R
M
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
54
Fugue
49.56
18%
8
* C5 *
-
3E9U
-
?
A:
[548-709]
------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
R
G
S
E
F
G
-
I
-----
F
--
A
F
--
T
D
-------
S
V
F
E
I
--------------
T
--
E
S
--
V
G
R
F
-
E
L
K
--
V
M
R
Y
S
G
A
R
G
T
V
I
V
P
Y
W
T
E
N
D
TATE
S
K
D
Y
E
----
G
A
R
G
---
E
L
V
-
F
E
N
N
E
S
-
E
-
K
--
F
I
D
L
F
I
L
E
ESSY
E
K
D
---
V
S
--
F
K
V
H
I
G
E
P
R
---
L
A
P
----
D
D
--
G
----
L
A
--
A
K
I
-----
K
E
V
E
K
KPVQDLT
E
L
D
R
I
L
L
L
S
K
P
R
N
G
E
L
T
T
A
Y
V
R
I
R
E
S
Q
--
E
F
K
A
T
V
D
K
L
V
A
K
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
49.47
16%
18
- C6 -
-
1X6M
-
GFA_PARDE
A:
[1-196]
-----------------------------------------------------------------------------------------------------------------------------------GHMVDTSGVKIHPAVDN
G
I
K
P
A
Q
P
G
F
A
G
G
T
L
H
C
-
K
-----
C
--
S
T
--
N
P
-------
V
R
V
A
V
--------------
R
--
A
Q
--
T
A
H
N
H
V
C
G
--
C
T
K
C
W
K
P
E
G
A
I
F
S
Q
V
A
V
V
G
-----
R
D
A
L
E
----
V
L
E
G
---
A
E
K
-
L
E
I
V
N
A
-
E
A
P
--
I
-------------
Q
---
R
H
--
R
C
R
D
C
G
V
H
M
---
Y
G
R
I
ENR
D
H
--
P
----
F
Y
--
G
L
D
-----
F
V
-------------
H
T
E
L
S
D
E
D
G
-
W
S
A
P
E
F
A
A
F
V
S
S
I
I
--
E
S
G
V
D
P
S
R
M
E
A
I
R
A
R
L
R
E
L
GLEPYDALS
P
P
L
M
D
A
I
A
T
H
I
A
K
R
S
GALAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
47.68
21%
36
- C6 -
-
1X6M
-
GFA_PARDE
A:
[22-116]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
P
G
F
A
G
-
G
T
L
H
C
K
C
--
S
T
--
N
P
-------
V
R
V
A
V
--------------
R
--
A
Q
--
T
A
H
N
H
V
C
G
--
C
T
K
C
W
K
P
E
G
A
I
F
S
Q
V
A
V
V
G
-----
R
D
A
L
E
----
V
L
E
G
---
A
E
K
-
L
E
I
V
N
A
-
E
-
A
P-
I
-------------
Q
---
R
H
--
R
C
R
D
C
G
V
H
M
Y
G
R
I
E
N
----
R
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
46.82
21%
40
- C6 -
-
1XA8
-
GFA_PARDE
A:
[22-116]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
P
G
F
A
G
-
G
T
L
H
C
K
C
--
S
T
--
N
P
-------
V
R
V
A
V
--------------
R
--
A
Q
--
T
A
H
N
H
V
C
G
--
C
T
K
C
W
K
P
E
G
A
I
F
S
Q
V
A
V
V
G
-----
R
D
A
L
E
----
V
L
E
G
---
A
E
K
-
L
E
I
V
N
A
-
E
-
A
P-
I
-------------
Q
---
R
H
--
R
C
R
D
C
G
V
H
M
Y
G
R
I
E
N
----
R
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
55
Fugue
38.01
14%
-7
- C3 -
-
1QF6
-
SYT_ECOLI
A:
[63-242]
-----------------------------------------------------------------------------------------------------------------------------------KD
E
E
G
L
E
I
I
R
H
S
C
A
H
L
L
G
H
A
I
K
Q
L
W
P
H
T
K
M
A
I
G
-
P
-----
V
--
I
D
--
N
G
-------
F
Y
Y
D
V
D
L
DRTLT
Q
E
D
V
E
A
L
E
--
K
R
--
M
H
E
L
A
E
K
N
Y
D
V
I
K
K
K
V
S
W
H
E
A
R
E
T
F
A
N
R
G
------
E
S
Y
K
----
V
S
I
L
---
D
E
N
-
I
A
H
D
D
K
-
P
-
G
--
L
-------------
Y
---
F
H
EE
Y
V
D
M
C
R
G
P
H
---
V
P
N
----
M
R
--
F
----
C
H
H
F
K
L
M
-----
K
T
-------------
A
G
A
Y
W
R
G
D
S
-
N
N
K
M
L
Q
R
I
Y
G
T
A
W
A
--
D
K
K
A
L
N
A
Y
L
Q
R
L
E
E
A
A
K
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
36.69
35%
-271
- C6 -
-
5IY8
-
RPB9_HUMAN
I:
[11-27]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
--
V
-------------
G
---
I
R
--
F
C
Q
E
C
N
N
M
L
---
Y
P
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
36.50
35%
-304
- C6 -
-
5FLM
-
RPB9_BOVIN
I:
[12-27]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-------------
G
---
I
R
--
F
C
Q
E
C
N
N
M
L
---
Y
P
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
Fugue
36.39
20%
27
- C5 -
-
4R2F
1
?
A:
[38-431]
---------------------------------------------------------------------------------------------------------------------------------------------------G
A
I
K
F
W
D
M
P
W
A
T
P
A
Y
N
D
-
A
-----
A
K
K
I
A
--
E
G
FSGAN
S
K
A
T
Y
Q
I
--------------
I
---
Q
--
W
N
N
F
Y
Q
T
F
--
S
S
A
I
A
S
K
T
G
P
A
V
S
T
G
G
G
F
Q
-----
A
F
Q
F
E
E
Q
GQ
I
A
Y
A
---
D
K
V
-
I
E
K
L
K
S
-
N
-
G
--
Q
-------------
F
---
D
D
--
F
L
P
G
V
V
E
P
F
---
K
T
S
----
K
G
YV
A
----
V
P
--
W
Q
L
-----
D
I
-------------
R
------
P
L
-
W
Y
R
K
S
L
F
E
K
A
G
V
G
V
PT
D
W
A
S
L
L
E
A
G
K
K
L
K
G
V
G
AVG
F
A
T
G
SGAGNN
I
G
N
H
L
M
I
M
M
M
L
N
N
GGGVFTKDGELDVLN
D
R
N
V
E
A
V
E
F
L
L
E
L
V
S
N
GVIDPAAVSYT
T
D
N
L
N
A
Q
W
K
D
SKAA
Y
G
M
L
T
L
G
V
P
E
R
V
GDTSGD
I
V
V
A
S
P
IAGPHG
D
K
A
A
L
I
F
P
N
N
I
M
M
Y
TNTPS
Q
E
A
S
E
E
F
V
V
Y
Y
L
G
K
L
K
E
L
W
Q
Q
KLMNALPVF
K
S
I
T
E
M
P
E
F
T
A
D
P
N
N
V
K
I
V
N
EYVPIAKTFASQGTALS
A
N
L
A
A
L
D
GG
Q
A
L
N
Q
F
T
Q
T
V
L
T
GKTD
A
K
S
A
L
T
A
F
D
T
G
L
K
S
V
LKK
32
HHSearch
35.47
29%
-334
- C6 -
-
5FMF
-
RPB9_YEAST
I:
[4-17]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
R
--
F
C
R
D
C
N
N
M
L
---
Y
P
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
35.44
50%
-201
* C10 *
-
5L9W
2
APCB_AROAE
C:
[20-35]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
--
Y
C
H
D
C
G
T
K
L
---
I
S
A
----
R
E
--
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
52
Fugue
34.56
19%
16
* C7 *
-
4X8E
9
EGTB_MYCT3
A:
[8-435]
PH
R
A
E
L
A
R
Q
L
I
D
A
R
N
R
T
L
R
L
V
DFD
D
A
E
L
R
RQYDPLMSP
L
V
W
D
L
A
H
I
G
Q
Q
E
E
L
W
L
LRGGDPRRPGLLE
P
A
V
E
Q
L
YDAFVHPRASRVHLPLLS
P
A
Q
A
R
R
F
C
A
T
V
R
S
A
V
L
D
A
L
D
R
LPEDADT
F
A
F
G
M
V
V
S
H
E
H
Q
H
D
E
T
M
L
Q
A
L
N
L
RSGEPLLGSG
T
A
L
P
P
G
R
P
G
V
A
G
T
S
-----
V
--
L
V
--
P
G
-------
G
P
F
V
L
--------------
G
--
V
D
--
L
A
D
E
-------
P
Y
A
L
D
N
E
R
P
A
H
V
V
D
V
P
---------
A
F
R
----
I
G
R
V
PVT
N
A
E
-
W
R
A
F
I
D
-
D
-
G
--
G
-------------
Y
RQR
R
W
--
W
S
D
A
G
W
A
Y
R
---
C
E
A
----
G
L
--
T
----
A
P
--
Q
F
W
NPDG
T
R
T
-------------
R
F
G
H
V
E
D
I
P
-
P
D
E
P
V
Q
H
V
-
T
Y
F
E
A
--
E
A
Y
A
A
W
A
G
A
R
L
P
T
E
I
E
W
E
K
A
C
AWDPATGRRRRYPWGDAAPTAALANLGGDALRPAPVGAYPAGASACGAEQMLGD
V
W
E
W
T
SS
P
L
R
P
W
PG
F
T
P
M
IYQRYSQPFFEGAGS
G
D
Y
R
V
L
R
GGSWAVAADILRPS
F
R
N
W
D
HPIRRQIF
A
G
V
R
L
A
W
D
V
D---------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
33.99
27%
-34
- C9 -
-
1OFB
1
AROG_YEAST
A:
[97-151]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
--------------
K
--
G
D
--
L
S
I
I
M
R
A
Y
--
L
E
K
P
R
T
T
V
G
W
K
G
L
I
N
D
P
D
V
-----
N
N
T
F
N
----
I
N
K
G
---
L
Q
S
-
A
R
Q
L
F
V
-
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
53
Fugue
33.88
20%
-49
- C5 -
-
1CWV
-
A:
[302-392]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
L
T
G
-----------------------------------------------------
I
L
V
N
--
G
Q
N
F
A
T
D
K
G
F
P
---
K
T
I
F
K
-----
N
A
T
F
Q
----
L
Q
M
D
---
N
D
-----
V
A
N
-
N
-
T
--
Q
-------------
Y
---
E
W
--
S
S
S
F
T
P
N
V
S
---
V
N
D
----
Q
-------------------------------------
G
Q
V
T
I
T
Y
-
Q
T
Y
S
E
V
A
V
T
A
K
S
K
K
--
F
----
P
S
Y
S
V
S
Y
R
F
Y
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
33.38
27%
-34
- C9 -
-
1OFA
2
AROG_YEAST
A:
[97-151]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
--------------
K
--
G
D
--
L
S
I
I
M
R
A
Y
--
L
E
K
P
R
T
T
V
G
W
K
G
L
I
N
D
P
D
V
-----
N
N
T
F
N
----
I
N
K
G
---
L
Q
S
-
A
R
Q
L
F
V
-
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
33.30
27%
-30
- C9 -
-
1OFO
1
AROG_YEAST
A:
[97-151]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
--------------
K
--
G
D
--
L
S
I
I
M
R
A
Y
--
L
E
K
P
R
T
T
V
G
W
K
G
L
I
N
D
P
D
V
-----
N
N
T
F
N
----
I
N
K
G
---
L
Q
S
-
A
R
Q
L
F
V
-
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------