@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VLH1: (2017-11-02 )
MKDMMGNGFIANAEAFTLATQIYVRMRRVTGRVIDAMYVVQNKDYAKYVIALALEAEDDELKRCVERLMVLTDSIPEQFQKEMTTVSIQTSEESEITAEDIYRAPVPHHYIGALR
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------.......-..10-........20....--.-...30..---......40..-.....-.50---.-.--...----...60.--.......70........-80.-.-...--...90.------..------.....100------......--.-.110...--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------MKDMMGN-
G
F
I
A-NA
E
A
F
T
L
A
T
Q
I
Y
V
R
--
M
-
R
R
V
T
G
R
V
---
I
D
A
M
Y
V
VQNK-DY
A
K
Y
-
V
I
A
---
L
-
A
--
L
EA----E
D
D
E
L
K
--
R
C
V
E
R
L
M
V
L
T
D
S
I
P
E
Q
F
-
Q
KE-M-
T
T
V
--
S
I
QTSE------ES------EI
T
A
E
D
I
-------YRAPVP--
H
-
H
Y
IGALR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
64.25
23%
-10
- C5 -
-
2A35
-
?
A:
[4-215]
---------------------------TPK
R
V
L
L
A
GATG
L
T
G
E
H
L
L
D
R
I
L
S
EPTLA
K
V
I
A
P
ARKALAEHPR
L
D
N
P
V
G
P
L
A
E
L
L
P
Q
L
D
G
S
I
D
T
A
F
C
C
L
G
T
T
I
K
E
A
-
G
S
-
E
E
A
F
-
R
A
V
D
F
D
L
P
L
A
V
G
K
R
--
A
-
L
E
M
G
A
R
------------------
H
Y
-
L
V
V
---
S
-
A
--
L
G
A
----
D
A
K
S
S
I
--
F
Y
N
R
V
K
G
E
L
E
Q
A
L
Q
E
Q
G
-
W
P
Q
-
L
-
T
I
A
R
P
S
L
L
F
G
P
------
R
E
------
E
F
R
L
A
E
I
-------
L
A
A
P
I
A
G
K
Y
-
H
G
I
E
A
C
D
L
A
R
A
L
W
R
L
A
L
E
E
G
K
G
V
R
F
V
E
S
D
E
L
R
K
L
G
KGS-------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
56.27
28%
-4
- C5 -
-
2KL8
-
?
A:
[1-85]
----------------------------------------------------------------------------------------------------
M
--
E
M
D
I
-
R
F
R
G
D
D
L
E
A
F
E
K
A
L
K
E
M
I
R
--
Q
A
R
K
F
A
G
------
T
V
T
Y
T
L
D
G
N
-
D
------------------------------------
L
E
I
R
I
T
G
V
P
E
Q
V
-
R
K
E
-
L
-
A
K
E
--
A
E
R
L
A
K
------
E
F
------
N
I
T
V
T
Y
T
-------
I
R
L
E
H
H
--
H
-
H
H
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
53.00
14%
48
- C5 -
-
4C6S
2
WR52C_ARATH
A:
[5-146]
---------------------------------------------------------------------------------E
E
F
V
C
I
S
C
V
EEVRYS
F
V
S
H
L
S
E
A
L
R
R
-
K
G
I
N
-
N
V
V
V
D
V
D
I
D
D
L
L
F
K
E
S
Q
-
A
K
I
E
K
A
G
---
V
S
V
M
V
L
P
G
N
C
-
D
P
S
E
V
-
W
L
D
KF
A
K
-
V
--
L
E
C
----
Q
R
N
N
K
D
--
Q
A
V
V
S
V
L
Y
G
D
S
L
L
R
D
Q
W
-
L
S
E
-
L
-
D
F
R
--
G
L
S
R
I
H
------
Q
S
R
KECS
D
S
I
L
V
E
E
I
-------
V
R
D
V
Y
E
--
T
-
H
F
Y
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
52.87
17%
-65
- C5 -
-
4BWZ
-
?
A:
[3-386]
G
A
E
H
L
L
E
I
F
Y
L
L
L
A
A
Q
V
C
A
F
I
F
K
R
L
NQP
V
V
I
G
E
V
L
A
G
V
L
V
GPALLGLVHEG
E
I
L
E
F
L
A
E
L
G
A
V
F
L
L
F
M
V
G
L
E
TR
L
K
D
I
L
A
V
G
K
E
A
F
L
V
A
V
L
G
V
A
L
P
F
L
G
G
Y
L
Y
G
L
E
I
-
G
F
-
E
-
T
L
P
A
L
F
L
G
T
A
L
V
A
T
--
S
-
V
G
I
T
A
R
V
---
L
Q
E
L
G
V
L
S
-
R
-
P
Y
S
R
I
-
I
L
G
---
A
-
A
--
V
I
D
----
D
V
L
G
L
I
V
L
A
C
V
N
G
V
A
E
-
T
G
Q
V
E
V
G
A
-
I
T
R
-
L
-
I
V
L
--
S
V
V
F
V
G
------
L
A
------
V
F
L
S
T
L
I
-------
A
R
L
P
L
E
--
R
-
L
P
V
G
S
P
L
G
F
A
L
A
L
G
V
G
M
A
A
L
A
A
S
I
GLA
P
I
V
G
A
F
L
G
G
M
L
L
S
EVREKYRL
E
E
P
I
F
A
I
E
S
F
L
A
P
I
F
F
A
M
V
G
V
R
LELSALASP
V
V
L
V
A
G
T
V
V
T
V
I
A
I
L
G
K
V
L
G
G
F
L
G
A
LTQG
V
R
S
A
L
T
V
G
C
G
M
APRG
E
V
G
L
I
V
A
A
L
G
L
K
A
GAVN
E
E
E
Y
A
I
V
L
F
M
V
V
F
T
T
L
F
A
P
F
A
L
K
P
L
I
A
W
T
E
R
E
R
A
A
K
E
3
PsiBlast_PDB
49.82
28%
-11
- C5 -
-
2Y7C
-
T1SK_ECOLI
A:
[360-431]
---------------------------------------------------------------------------------------------------------------------------------------------------
I
S
G
K
-
D
I
K
S
Q
-
V
V
L
---
L
-
P
--
P
V
K
----
E
Q
A
E
I
V
--
R
R
V
E
Q
L
F
A
Y
A
D
T
I
E
K
Q
V
-
N
N
A
-
L
-
A
R
V
--
N
N
L
T
Q
S
I
L
A
K
A
F
R
G
------
E
L
T
A
Q
---------
W
R
A
E
N
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
49.28
26%
-191
- C5 -
-
4F6X
2
CRTM_STAAU
A:
[170-214]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
I
N
I
L
R
D
V
G
E
D
F
-
E
N
E
-
R
-
I
Y
F
--
S
K
Q
R
L
K
------
Q
Y
------
E
V
D
I
A
E
V
-------
Y
Q
N
G
V
N
--
N
-
H
Y
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
47.82
26%
-174
- C5 -
-
4F6V
3
CRTM_STAAU
A:
[170-214]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
I
N
I
L
R
D
V
G
E
D
F
-
E
N
E
-
R
-
I
Y
F
--
S
K
Q
R
L
K
------
Q
Y
------
E
V
D
I
A
E
V
-------
Y
Q
N
G
V
N
--
N
-
H
Y
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
45.58
30%
45
- C5 -
-
4KIK
-
IKKB_HUMAN
A:
[526-578]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
A
---
V
-
E
--
L
C
G
----
R
E
N
E
V
K
--
L
L
V
E
R
M
M
A
L
Q
T
D
I
V
D
L
Q
-
R
S
-----------
G
T
L
D
------
D
L
------
E
E
Q
A
R
E
L
-------
Y
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
45.17
28%
-1
- C5 -
-
2Y7H
-
T1SK_ECOLI
A:
[360-431]
---------------------------------------------------------------------------------------------------------------------------------------------------
I
S
G
K
-
D
I
K
S
Q
-
V
V
L
---
L
-
P
--
P
V
K
----
E
Q
A
E
I
V
--
R
R
V
E
Q
L
F
A
Y
A
D
T
I
E
K
Q
V
-
N
N
A
-
L
-
A
R
V
--
N
N
L
T
Q
S
I
L
A
K
A
F
R
G
------
E
L
T
A
Q
---------
W
R
A
E
N
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
44.36
30%
-70
- C5 -
-
4E3C
-
IKKB_HUMAN
A:
[520-572]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
A
---
V
-
E
--
L
C
G
----
R
E
N
E
V
K
--
L
L
V
E
R
M
M
A
L
Q
T
D
I
V
D
L
Q
-
R
S
------------
T
L
D
------
D
L
------
E
E
Q
A
R
E
L
-------
Y
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
42.88
17%
91
- C5 -
-
3FH3
-
?
A:
[12-157]
-----------------------------------------------------------------------------------KH
A
G
T
M
T
L
E
A
Y
M
R
F
S
A
K
L
S
E
A
K
D
E
M
G
-
T
K
-
E
Y
E
V
F
T
K
E
L
K
K
L
T
N
--
A
-
K
L
A
Y
G
D
S
NGN
I
D
--
Y
D
A
L
S
S
-
E
K
R
E
E
M
K
K
V
---
S
M
G
--
L
Q
P
----
Y
F
D
K
L
N
--
G
H
K
S
S
K
E
V
L
T
Q
E
E
F
D
R
Y
M
E
A
L
M
T
H
E
I
V
--
R
V
K
T
K
S
------
T
G
------
A
I
K
V
E
E
I
PEAY
K
E
R
F
I
K
A
E
Q
--
F
M
E
Y
V
D
E
K
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
42.79
14%
-205
- C5 -
-
2HH7
-
CSOR_MYCTU
A:
[11-46]
--------------------------------------------------------------------------------------------------------------------------
A
A
L
N
R
--
L
-
K
T
V
R
G
H
L
---
D
G
I
V
R
M
L
E
S
D
-
A
Y
C
V
D
-
V
M
K
---
Q
-
I
--
S
A
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
42.77
11%
-298
- C5 -
-
3AAI
-
?
A:
[15-59]
--------------------------------------------------------------------------------------------------------------------------
E
A
R
R
R
--
L
-
L
S
A
K
G
H
L
---
E
G
I
L
R
M
L
E
D
E
K
V
Y
C
V
D
-
V
L
K
---
Q
-
L
--
K
A
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
41.61
11%
-303
- C5 -
-
3AAI
-
?
B:
[15-61]
--------------------------------------------------------------------------------------------------------------------------
E
A
R
R
R
--
L
-
L
S
A
K
G
H
L
---
E
G
I
L
R
M
L
E
D
E
K
V
Y
C
V
D
-
V
L
K
---
Q
-
L
--
K
A
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
40.64
19%
-160
- C5 -
-
4M1P
-
?
A:
[24-59]
--------------------------------------------------------------------------------------------------------------------------
N
I
M
K
R
--
L
-
K
R
I
E
G
Q
V
---
R
G
V
Q
K
M
V
E
D
N
-
R
Y
C
I
D
-
I
L
V
---
Q
-
I
--
S
A
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
39.94
16%
-146
- C5 -
-
5FMN
-
?
B:
[27-63]
-------------------------------------------------------------------------------------------------------------------------
Q
K
L
V
N
R
--
L
-
S
R
I
E
G
H
I
---
R
G
V
K
T
M
V
Q
E
N
-
R
P
C
P
E
-
V
L
I
---
Q
-
V
--
A
A
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
39.81
17%
-139
- C5 -
-
5LCY
-
?
D:
[10-45]
--------------------------------------------------------------------------------------------------------------------------
R
I
L
T
R
--
V
-
R
R
I
R
G
Q
V
---
E
A
L
E
R
A
L
E
S
G
-
E
P
C
L
A
-
I
L
Q
---
Q
-
I
--
A
A
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
39.69
10%
-23
- C5 -
-
2QF9
-
?
A:
[100-155]
---------------------------------------------------------------------------------------------------------------------------
E
M
K
K
--
L
-
G
T
L
D
G
K
Q
---
A
E
V
Y
Y
L
Q
L
M
T
-
E
H
H
R
G
-
G
V
H
---
M
-
A
--
K
G
C
V
E
RC
T
V
G
V
E
K
--
R
L
A
R
G
M
V
E
S
Q
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
39.18
16%
-140
- C5 -
-
5FMN
-
?
A:
[27-63]
-------------------------------------------------------------------------------------------------------------------------
Q
K
L
V
N
R
--
L
-
S
R
I
E
G
H
I
---
R
G
V
K
T
M
V
Q
E
N
-
R
P
C
P
E
-
V
L
I
---
Q
-
V
--
A
A
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
38.72
16%
-13
- C3 -
-
1IIY
2
CVN_NOSEL
A:
[1-101]
--------------------------------------------------------------------------------------------------------
L
G
K
--
F
S
Q
-
T
C
Y
N
--------------
S
A
I
Q
G
S
V
---
L
T
S
T
C
E
R
T
N
G
-
G
Y
N
T
S
-
S
I
D
---
L
-
N
SV
I
E
N
----
V
D
G
S
L
K
--
W
Q
P
S
N
F
I
E
T
C
R
N
T
Q
L
A
G
-
S
S
E
-
L
-
A
A
E
--
C
K
T
R
A
Q
------
Q
F
------
V
S
T
K
I
N
L
-------
D
D
H
I
A
N
--
I
-
D
--
G
T
L
K
Y
E------------------------------------------------------------------------------------------------------------------------------------------------------------------------