@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VLM6: (2017-11-03 )
MLRLKCLGGPLYGQEYSHAGDEFLFNDKQSGKQTLYRKQTLDFTPPQDVFVAESISNIIAYNLALQLKK
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....-....------10.....----...20..--------......30.-.....---.------------------.40........50.....-...60...-.....--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
R
L
K
-CLGG------PLYGQEY----SHAGDEF--------LFNDKQS
G
K
-
Q
T
L
Y
R
---K------------------QTLDFTPP
Q
D
V
F
V
A
E
S
I
S
-
N
I
I
A
Y
N
L
A
-
L
Q
LKK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
59.77
32%
40
* C9 *
-
5I5H
-
YEJM_ECOLI
A:
[246-572]
YPLSELRYRDMGTG
Q
N
V
L
L
I
T
V
DGLNYSR
F
E
K
Q
M
P
A
L
A
G
F
A
E
Q
N
ISFTRHMSSGNT
T
D
N
G
I
F
G
L
F
YGISPSY
M
D
G
I
L
S
T
RTPA
A
L
I
T
A
L
N
Q
Q
G
Y
Q
L
G
L
F
S
SDGFTS
P
L
Y
R
Q
A
L
L
S
D
F
SM
P
S
V
R
T
QS
D
E
Q
T
A
T
Q
W
I
N
W
L
G
RYAQEDNRWF
S
W
V
S
F
N
GTNIDDSN
Q
Q
A
F
A
R
K
Y
S
R
A
A
G
N
V
D
D
Q
I
N
R
V
L
N
A
L
R
D
S
GKLDN
T
V
V
I
I
T
A
G
R
G
I
P
LSEEEETFDWSHGHL
Q
V
P
L
V
I
H
W
PGT
P
A
Q
R
I
NALTD
H
T
D
L
M
T
T
L
M
Q
R
L
L
-
H
V
S
T
------
P
--
A
S
E
Y
----
S
Q
G
Q
D
----------
L
F
N
P
Q
R
R
H
Y
W
V
T
A
A
D
---
N
------------------
D
T
L
A
I
T
T
P
K
K
T
L
V
L
N
N
N
G
-
K
Y
R
T
Y
N
L
R
-
G
E
R
V
K
DEKPQLSL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
59.13
36%
40
- C10 -
-
2NAC
-
FDH_PSESR
A:
[11-48]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
V
D
G
Y
P
K
----
T
Y
A
R
D
D
L
--------
P
K
I
D
H
Y
P
G
G
-
Q
T
L
P
T
---
P
------------------
K
A
I
D
F
T
P
G
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
58.59
36%
70
- C10 -
-
2GO1
-
FDH_PSESR
A:
[12-49]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
V
D
G
Y
P
K
----
T
Y
A
R
D
D
L
--------
P
K
I
D
H
Y
P
G
G
-
Q
T
L
P
T
---
P
------------------
K
A
I
D
F
T
P
G
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
58.54
36%
84
- C10 -
-
3WR5
-
?
A:
[17-54]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
V
D
G
Y
P
K
----
T
Y
A
R
D
D
L
--------
P
K
I
D
H
Y
P
G
G
-
Q
T
L
P
T
---
P
------------------
K
A
I
D
F
T
P
G
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
58.14
36%
28
- C10 -
-
2NAD
-
FDH_PSESR
A:
[11-48]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
V
D
G
Y
P
K
----
T
Y
A
R
D
D
L
--------
P
K
I
D
H
Y
P
G
G
-
Q
T
L
P
T
---
P
------------------
K
A
I
D
F
T
P
G
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
57.53
23%
10
- C9 -
-
5CXB
1
B:
[1-369]
-------------------------------------------------------------------------------------------------------------------------PSPDELKPFPTVQQ
T
I
F
R
GHEGRVR
S
V
A
I
D
PTGV
A
L
A
T
G
GDDG
T
V
R
V
W
ELLTGRQV
W
S
V
K
LNGDEAVN
T
V
R
W
RPTKDTF
I
L
A
A
A
A
GE
D
I
F
L
M
I
P
THPSVT
P
A
L
D
Q
A
S
R
D
I
L
N
AGFPP
G
K
W
A
R
PG
T
R
L
E
D
E
GV
L
L
R
I
T
--
V
R
S
------
T
I
K
A
I
S
W
----
H
R
R
G
D
H
F
--------
A
T
V
S
P
S
G
Q
R
-
S
S
V
A
I
---
H
T
LSKH
L
T
Q
I
P
FRKLNGLA
Q
T
A
S
F
H
P
L
R
P
L
F
F
V
A
T
Q
R
-
S
I
R
C
Y
D
L
Q
K
L
E
L
V
K
I
V
Q
PGAKWIS
S
F
D
V
H
PGGD
N
L
V
V
G
S
YDK
R
L
L
W
H
DLDLSNRPY
K
T
M
R
FHTEAIR
A
V
R
F
HKGGLP
L
F
A
D
A
S
DDG
S
L
Q
I
F
H
G
K
V
P
NDQL
E
N
P
T
I
V
P
V
K
MLKG
H
K
V
V
NKLGVL
D
I
D
W
H
PREP
W
C
V
S
A
G
ADG
T
A
R
L
W
M-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
57.01
36%
84
- C10 -
-
2GUG
1
FDH_PSESR
A:
[12-54]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
V
D
G
Y
P
K
----
T
Y
A
R
D
D
L
--------
P
K
I
D
H
Y
P
G
G
-
Q
T
L
P
T
---
P
------------------
K
A
I
D
F
T
P
G
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
51.78
38%
117
- C10 -
-
3FN4
-
?
A:
[11-46]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
I
N
G
Y
P
T
----
S
Y
A
R
D
D
L
--------
P
R
I
D
K
Y
P
D
G
-
Q
T
L
P
T
---
P
------------------
K
A
I
D
F
T
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
51.46
38%
63
- C7 -
-
3PKZ
-
BIN3_STAAU
A:
[26-67]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
E
K
--------
I
F
T
E
K
Q
S
G
K
-
S
I
E
N
R
P
I
L
Q
------------------
K
A
L
N
F
V
E
M
G
D
R
F
I
V
E
S
I
D
-
R
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
49.87
38%
110
* C10 *
-
2GSD
-
?
A:
[12-47]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
I
N
G
Y
P
T
----
S
Y
A
R
D
D
L
--------
P
R
I
D
K
Y
P
D
G
-
Q
T
L
P
T
---
P
------------------
K
A
I
D
F
T
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
49.74
41%
65
- C7 -
-
5C35
-
BIN3_STAAU
A:
[26-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
E
K
--------
I
F
T
E
K
Q
S
G
K
-
S
I
E
N
R
P
I
L
Q
------------------
K
A
L
N
F
V
E
M
G
D
R
F
I
V
E
S
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
49.49
41%
39
- C7 -
-
5C32
-
BIN3_STAAU
B:
[26-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
E
K
--------
I
F
T
E
K
Q
S
G
K
-
S
I
E
N
R
P
I
L
Q
------------------
K
A
L
N
F
V
E
M
G
D
R
F
I
V
E
S
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
48.71
40%
-793
- C1 -
-
2G2S
-
?
A:
[45-54]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
F
I
-
C
T
T
G
------
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
48.02
41%
19
- C7 -
-
5C31
-
BIN3_STAAU
A:
[26-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
E
K
--------
I
F
T
E
K
Q
S
G
K
-
S
I
E
N
R
P
I
L
Q
------------------
K
A
L
N
F
V
E
M
G
D
R
F
I
V
E
S
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
43.35
35%
36
- C5 -
-
2QZV
-
MVP_RAT
A:
[3-779]
---------------------------------------------------------------------------------------------------------------------------------------GCGCPCGCGAMATE
E
A
I
I
R
I
P
P
YH
Y
I
H
V
L
D
QNSN
V
S
R
V
E
VGP
K
T
Y
I
R
Q
D
N
E
R
V
L
F
A
PV
R
M
V
T
V
P
PRHYCIV
A
N
P
V
S
R
DTQS
S
V
L
F
DITGQVRL
R
H
A
D
Q
E
I
R
L
A
Q
D
P
F
P
L
Y
PQVVLPN
T
A
L
H
L
K
A
L
L
D
F
------
E
D
K
N
G
D
K
----
V
M
A
G
D
E
W
--------
L
F
E
G
P
G
T
----------------------------------
Y
I
P
Q
K
E
V
E
V
V
E
I
I
Q
A
T
V
I
K
Q
N
Q
A
-
L
R
L
R
A
R
K
E
C
F
D
R
EGKG
R
V
T
G
E
E
W
L
V
RSVGAYLPAVFEEVL
D
L
V
D
A
VILTE
K
T
A
L
H
L
R
AL
Q
N
F
R
D
LRGV
L
H
R
T
G
E
E
W
L
V
TVQDTEAHVPDVYEEVL
G
V
V
P
ITTLKSFFLQPGERLERGI
Q
D
V
Y
V
L
S
E
Q
Q
G
L
L
L
K
A
L
Q
PLEE
G
E
S
E
E
K
V
S
H
Q
A
G
D
C
WLIRGPLEYVPSA
K
V
E
V
VEERQ
A
I
P
L
D
Q
N
E
G
I
Y
V
Q
D
VKTG
K
V
R
A
V
I
G
STY
M
L
T
Q
D
E
V
L
W
E
K
ELPSG
V
E
E
L
L
N
L
GHDP
L
A
D
R
G
QKGTAK
P
L
Q
P
SAPR
N
K
T
R
V
V
S
Y
R
V
PHNA
A
V
Q
V
Y
D
Y
RAKRAR
V
V
F
G
PE
L
V
T
L
D
PEEQ
F
T
V
L
S
L
SAGRPKRP
H
A
R
R
A
L
C
L
L
L
G
P
D
F
F
T
D
V
I
T
I
E
T
AD
H
A
R
L
Q
LQLAYN
W
H
F
E
L
K
N
R
N
D
P
A
E
A
A
KLFSV
P
D
F
V
G
D
A
C
K
A
I
A
S
R
V
R
G
A
V
A
S
V
T
F
D
D
F
H
K
N
S
A
R
I
I
R
M
AVFGFEM
S
E
D
T
G
P
D
GTLLPKARD
Q
A
V
F
PQNG
L
V
V
S
S
V
D
V
Q
S
V
E
P
V
D
Q
R
T
R
D
A
L
Q
R
S
V
Q
L
A
I
E
I
T
T
N
S
Q
E
AA
A
K
H
E
A
Q
R
L
E
Q
E
A
R
G
R
LER
Q
K
I
L
D
Q
S
E
A
E
K
A
R
K
E
L
L
E
L
E
A
M
S
M
A
V
E
ST
G
N
A
K
A
E
A
E
S
R
A
E
A
ARI
E
G
E
G
S
V
L
Q
AK
L
K
A
Q
A
L
A
I
E
T
E
A
E
L
E
R
V
K
K
V
R
E
MELIYAR
A
Q
L
E
L
37
Fugue
42.04
15%
-118
- C3 -
-
4G2S
-
PRGH_SALTY
A:
[6-111]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
Y
I
V
R
-
L
L
N
S
------
S
L
N
G
C
E
F
----
P
L
L
T
G
R
T
--------
L
F
V
V
---
G
Q
-
S
D
A
L
T
---
A
------------------
S
G
Q
L
P
D
I
P
A
D
S
F
F
I
P
L
D
H
-
G
G
V
N
F
E
I
Q
-
V
D
T
D
A
T
E
I
I
L
H
E
L
K
EG
N
S
E
S
R
S
V
Q
L
N
T
P
I
Q
V
GE
L
L
I
L
I
R
P
ESEPW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
39.43
26%
-84
- C11 -
-
3EF2
-
?
B:
[245-282]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
------
V
M
L
G
V
N
K
AGDA
A
H
A
Y
N
F
T
LTKDHADI
V
F
F
E
P
Q
N
G
G
-
Y
L
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
39.24
23%
-327
- C7 -
-
1DC1
2
T2B1_GEOSE
B:
[268-297]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
---
E
------------------
K
G
L
---
S
P
K
T
I
F
I
G
A
A
I
E
-
H
S
M
A
E
E
I
W
-
D
Q
L
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
37.15
17%
71
- C4 -
-
1VFI
-
VBP2_ASCSS
A:
[1-95]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ISE
F
A
P
V
D
-
C
K
G
Q
CTTPC
E
P
L
T
A
C
K
E
----
K
C
A
E
S
C
E
--------
T
S
A
D
K
K
T
C
R
-
R
N
C
K
K
---
A
------------------
D
C
E
P
Q
D
K
V
C
D
A
C
R
M
K
C
H
K
-
A
C
R
A
A
N
C
A
-
S
E
C
P
K
HEHKS
D
T
C
R
A
C
M
K
T
NCK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
36.52
26%
-8
* C11 *
-
5MU9
1
?
A:
[244-282]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
------
V
M
L
G
V
N
K
AGD
A
A
H
A
Y
N
F
T
L
T
KDHA
D
I
V
F
F
E
P
Q
N
G
G
-
Y
L
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------