@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VLR1: (2017-11-04 )
MNYFDYFLFIFSVIIMIATPGPVMILVASAGLKGGYKKALETIFGTNLASLVLIFISVLVLKGVLGINENYLNIIRVLGCLYIGYLGFSILKEVIQAPHPEAIQTVSAQNGGFKKGFLVGISNPKDIIFFSAFFPQFVSISPHLDLSLTILTLTWMVLDFLTLSLVYIFFRRLSNSHLYPKILGLCGLLLLVIAVYGLYQTFI
Atome Classification :
(17 SA)
----------------------------------------------------------.........10...----.....20-........30......--..40----....---....50......--..60-------.......-----------..70.-.......80.-.......----------90.-------.....-.----.----100.......-----..110.......120-........130.......140.......-------150.....------..160-.......170.......180---.......190------------.........200.-----------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------M
N
Y
F
D
Y
F
L
F
I
F
S
V
I
----
I
M
IATPG-
P
V
M
I
L
V
ASAGLK
G
G
Y
K
--
K
A
L
E
----
T
I
FG---
T
N
L
A
S
L
V
L
I
F
I
S
--
V
L
V
--------
L
K
G
V
LGI-----------N
E
N
Y
L
-
N
I
I
R
V
L
G
C
L
Y
-
I
G
Y
L
G
F
S
----------
I
L
K
-------
E
V
I
QA-P----H----
P
--
E
A
I
Q
T
VS-----AQNGGFK
K
G
F
L
V
G-I-SNPK
D
I
I
F
F
S
A
F
F
P
Q
F
VSISPHL
D
L
S
L
T
-------
I
L
T
L
T
W
M
V
------
L
D
F
L
T
-
L
S
L
V
Y
I
F
F
R
R
LSNSH
L
Y
P
K
I
---
L
G
L
C
G
L
L
L
--------------
L
V
I
A
V
Y
G
L
Y
Q
TFI-----------------------------------------------------
17
Fugue
68.00
15%
-69
* C4 *
-
5CGZ
9
GALB_PSEPK
A:
[1-240]
--------------------------------------------------M
K
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A
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V
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A
I
----
A
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--
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KGEM
T
E
A
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---
V
K
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A
R
R
E
E
A
M
A
A
--
A
E
I
--------
L
G
A
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V
E
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FDIGDY
P
M
R
A
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A
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R
R
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Q
-
P
E
F
V
L
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H
----------
S
L
K
-------
D
P
Y
N
Y
-
D
----
H
----
P
--
L
A
M
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L
A
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E
A
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I
I
A
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A
E
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Y
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G
E
K
I
--
V
-
G
A
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-
V
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A
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E
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C
E
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P
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T
F
L
D
I
T
S------
V
W
D
K
K
Y
A
A
------
I
Q
C
M
A
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Q
E
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L
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E
Y
Y
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A
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---
R
N
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S
A
--------------
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N
I
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Y
A
E
G
L
Q
S
V
F
P
R
V
T
ENLA---------------------------------------------
18
Fugue
64.77
18%
-142
- C2 -
-
1AA7
-
M1_I34A1
A:
[1-158]
----------------------------------------------------------
M
S
----------------
L
L
T
E
V
E
T
-
Y
V
L
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A
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A
--
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L
E
----
D
V
F
A
GKN
T
D
L
E
V
L
M
E
W
L
K
T
--
R
-------------------------------------
P
I
L
S
P
L
T
-
K
G
I
L
G
F
V
----------
F
T
L
-------
T
V
P
S
E
-
R
----
G
----
L
--
Q
R
R
R
F
V
Q
-----
N
A
--------
L
N
G
-
N
-
G
D
P
N
N
M
D
K
A
V
K
L
Y
R
K
L
K
R
-------
E
I
T
-------
F
H
G
A
K
E
I
S
------
L
S
Y
S
A
-
G
A
L
A
S
C
M
G
L
I
Y
N
R
M
G
A
V
T
T
E
---
V
A
F
-
G
L
V
C
--------------
A
T
C
E
Q
I
A
D
S
Q
--------------------------------------------------------
13
Fugue
58.03
17%
-39
* C3 *
-
5FTW
4
CHER_BACSU
A:
[2-256]
-----------------------------------------------------------
D
T
Y
S
V
F
T
T
K
W
K
Q
L
TGVD
L
T
L
Y
K
E
A
-
Q
M
K
R
R
L
T
S
L
Y
E
K
K
G
F
Q
S
F
K
D
F
A
----
A
A
L
E
---
K
D
Q
A
L
L
N
E
T
L
D
R
--
M
T
I
N
V
S
E
F
YRN
Y
K
R
W
E
V
L
-----------
E
T
A
I
L
-
P
L
I
K
T
S
R
P
L
K
-
I
W
S
A
A
C
S
TG
E
E
P
Y
T
L
A
M
L
L
D
Q
QKGLP
G
Y
Q
I
L
A
-
T
----
D
----
I
--
D
E
K
A
L
E
K
-----
A
K
K
G
V
Y
Q
E
R
S
L
Q
E
-
V
-
P
L
S
V
K
D
R
Y
F
T
Q
N
A
N
R
S
Y
E
V
K
T
E
I
K
K
N
I
T
-------
F
K
K
H
N
L
L
A
D
R
Y
E
Q
D
F
D
L
I
V
-
C
R
N
V
F
I
Y
F
T
E
S
A
K
E
E
L
Y
L
K
M
A
H
S
L
K
K
N
G
V
L
F
V
G
ST
E
Q
I
F
NPEKFG
L
V
P
A
D
T
F
F
Y
Q
K
R
------------------------------------------------------
21
Fugue
55.89
23%
-77
- C4 -
-
4XYW
-
WBNH_ECOLX
A:
[1-338]
M
K
N
V
G
F
I
V
TKSEIGG
A
Q
T
W
V
N
E
I
S
N
L
I
KEE
C
N
I
F
L
I
T
SEEGWLTHKDVFA
G
V
F
V
I
PGI
K
K
Y
F
D
-
F
L
T
L
F
K
L
R
----
K
I
L
K
E
N
N
--
I
S
T
L
I
A
S
S
A
N
A
G
V
Y
A
--
R
L
V
R
----
L
--------
L
V
D
F
K
C
I
Y
V
S
HG
W
S
C
--------
L
K
S
I
F
C
I
-----------
V
E
K
Y
L
S
L
L
T
D
V
I
W
C
V
S
-
K
N
D
E
K
K
A
----------
I
E
N
-------
I
G
I
K
E
-
P
K
I
I
T
V
----
S
--
N
S
V
P
Q
M
P
-----
R
C
K
Q
L
Q
Y
K
V
L
F
V
G
R
L
-
T
H
P
K
R
P
E
L
L
A
N
V
I
S
K
K
P
Q
Y
S
L
H
I
V
G
S
L
K
KQFSECE
N
I
H
F
L
G
E
V
------
N
N
F
Y
N
-
Y
H
E
-
Y
D
L
F
S
L
I
S
D
S
E
G
L
P
M
S
G
L
E
A
H
T
A
A
I
P
L
--------------
L
L
S
D
V
G
G
C
F
E
L
I
E
GN
G
L
L
V
E
NT
E
D
D
I
G
Y
K
L
D
K
I
F
D
D
Y
E
N
Y
R
E
Q
A
I
R
A
SGKFVIENY
A
S
A
Y
K
S
I
I
LG
12
Fugue
42.62
9%
-151
* C5 *
-
2JYN
-
YP225_YEAST
A:
[1-146]
----------------------------------------------------------
M
S
T
F
N
------------------------------
A
E
T
A
D
N
L
--
E
D
I
E
----
K
Q
F
A
---
V
V
A
V
E
Q
A
E
T
Y
W
K
--
L
L
T
--------
S
V
P
G
S
K
L
-----------
R
L
T
K
-----------
F
-
D
D
E
I
Y
E
N
----------
F
M
E
-------
R
F
P
E
Y
-
K
----
D
----
V
--
E
R
V
K
K
F
T
-----
E
E
E
-----------
L
-
K
T
K
E
A
K
E
R
W
R
K
F
F
T
I
F
E
K
K
I
E
D
Y
N
F
G
-------------
T
L
L
R
------
T
D
A
S
A
-
E
Y
-------
G
Q
F
T
T
C
F
V
V
R
L
---
Q
F
Y
A
--
F
E
--------------
I
A
R
N
K
H
G
L
N
D
W
I
V
G
QK--------------------------------------------------
2
HHSearch
41.81
15%
-167
- C5 -
-
2N4X
-
?
A:
[41-197]
-------------------------------------------------------------------------------------------------
R
A
L
--
D
A
F
L
----
I
V
A
G
---
L
T
I
S
M
L
I
L
G
Y
T
A
--
S
L
---------
F
F
----------------------
G
F
F
R
V
V
A
M
L
F
-
L
L
I
F
A
L
I
----------
L
L
S
-------
D
E
L
D
E
K
V
----
S
I
F
A
S
R
M
T
S
G
L
S
W
K
I
-----
Q
T
L
P
S
F
F
F
G
M
L
L
A
-
F
L
W
L
P
A
I
L
P
F
A
G
I
A
I
S
Q
T
L
L
S
E
-
N
-
P
L
V
M
L
-------
S
Y
G
L
G
M
A
----------
V
T
-
I
A
A
V
F
K
M
G
E
K
F
V
-
K
A
N
F
Q
L
I
---
R
K
V
T
G
A
I
V
--------------
L
L
Y
L
A
Y
F
A
L
T
E
-------------------------------------------------------
7
HHSearch
36.12
18%
-309
- C5 -
-
1WAZ
-
?
A:
[28-67]
----------------------------------------------------------------------------------------------------------------------------
V
I
L
L
G
--
V
V
G
--------
L
S
A
L
T
G
--------------
Y
L
D
-
Y
V
L
L
P
A
L
A
I
F
-
I
G
L
T
I
Y
A
----------
I
Q
R
-------
K
R
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
35.93
32%
-139
- C5 -
-
1WEH
-
?
A:
[55-102]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
G
L
V
V
G
-
V
-
T
A
P
-------
A
F
F
P
E
R
R
G
P
N
P
F
V
D
L
E
L
P
-------
A
A
T
L
P
Q
R
I
------
G
R
L
L
D
-
L
G
A
G
Y
L
---------------------------------------------------------------------------------------------------------
15
Fugue
28.74
22%
-239
- C5 -
-
2L9U
-
ERBB3_HUMAN
A:
[637-676]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
R
T
H
L
T
M
A
L
T
-------
V
I
A
G
L
V
V
I
------
F
M
M
L
G
-
G
T
F
L
Y
W
R
G
R
R
H
H
H
H
H
H
-----------------------------------------------------------------------------------------------
20
Fugue
27.85
10%
-54
- C3 -
-
5HDA
-
ZMY11_HUMAN
A:
[3-123]
---------------------------------------------------------------------------------------------
R
M
K
S
D
H
K
--
R
E
T
E
----
R
V
V
R
---
E
A
L
E
K
L
R
S
E
M
E
E
--
E
K
R
--------
Q
A
V
N
K
A
V
-----------
A
N
M
Q
G
-
E
M
D
R
K
C
K
Q
V
K
E
K
C
K
E
E
F
V
----------
E
E
I
-------
K
K
L
A
T
-
Q
----
H
----
K
--
Q
L
I
S
Q
T
K
-----
K
K
Q
W
C
Y
N
C
E
E
E
A
M
-
Y
-
H
C
C
W
N
T
S
Y
C
S
I
K
C
Q
Q
E
H
W
H
A
E
H
K
R
T
C
R
R
-------
K
----------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
26.55
14%
-
- C1 -
-
3S8F
2
COXA_THET8
C:
[23-29]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
-
L
G
V
Y
A
V
---------------------------------------------------------------------------------------------------------
16
Fugue
24.14
55%
-189
- C5 -
-
2AP7
-
BMNH5_BOMVA
A:
[1-20]
--------------------------------------------------------------------------------
I
I
G
-
P
V
L
G
L
V
G
S
A
-
L
G
G
L
L
K
--
K
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
23.32
57%
-166
- C5 -
-
2AP8
-
BMNH5_BOMVA
A:
[1-20]
---------------------------------------------------------------------------------
I
G
-
P
V
L
G
L
V
G
S
A
-
L
G
G
L
L
K
--
K
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
21.89
11%
-176
- C5 -
-
2LJ2
-
?
A:
[42-68]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
D
-
Y
V
L
L
P
A
L
A
I
F
-
I
G
L
T
I
Y
A
----------
I
Q
R
-------
K
R
Q
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
18.59
35%
-
- C5 -
-
2MC7
-
?
A:
[11-27]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
---
F
L
L
I
S
L
L
V
--------------
L
C
L
A
L
W
Q
-----------------------------------------------------------
3
HHSearch
17.88
10%
-113
- C5 -
-
2M67
-
?
A:
[41-70]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Y
L
D
-
Y
V
L
L
P
A
L
A
I
F
-
I
G
L
T
I
Y
A
----------
I
Q
R
-------
K
R
Q
A
D
-
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
11.72
11%
81
- C5 -
-
2KEG
-
?
A:
[2-19]
------------------------------------------------------------------------------------------------
R
S
R
K
--
N
G
I
G
----
Y
A
I
G
---
Y
A
F
G
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------