@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VLT6: (2017-11-04 )
MISLEFLLASAIGLLVATGIYLILRARTFPVVLGLAVLGYAVNLFLFAMGRLQVSSPAILTETTNITDPLPQALILTAIVIGFATTAFIVQLALRSRYESGSDHVDAKEDISPTYDPREDEP
Atome Classification :
(20 SA)
--------------------------------------------------------------------....--------.....-10........20----------------.------.--......30......---------..40..--------..-....50....-.------------...60........70--------......----------...80........90.-----.......100------...-....110------.......120-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------MI
S
L
--------
E
F
L
L
A
-
S
A
I
G
L
L
V
A
T
G
I
Y
----------------
L
------
I
--
L
RAR
T
F
P
V
V
L
G
L
A
V
---------
L
G
Y
A
V
N
--------
L
F
-
L
F
A
MGRLQVS-S------------
P
A
I
L
T
ETTNITDP
L
---------
P
Q
A
L
I
L
----------
T
A
I
V
I
G
F
A
T
T
A
F
I
V
Q
L
-----
A
L
R
S
RYESGS------DHV-DAKEDIS------PTYDPREDEP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
78.59
21%
-188
- C1 -
-
3RKO
-
NUOK_ECOBD
G:
[1-100]
--------------------------------------------------------------------
M
I
P
L
--------
Q
H
G
L
I
-
L
A
A
I
L
F
V
L
G
L
T
G
----------------
L
------
V
--
I
R
R
N
L
L
F
M
L
I
G
L
E
I
---------
M
I
N
A
S
A
--------
L
A
-
F
V
V
A
G
S
Y
W
--------------------------
G
Q
T
D
---------
G
Q
V
M
Y
I
----------
L
A
I
S
L
A
A
A
E
A
S
I
G
L
A
L
-----
L
L
Q
L
H
R
R
R
Q
N
------
L
N
I
-
D
S
V
S
E
M
R
------
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
65.26
16%
-167
- C1 -
-
3RKO
-
NUOK_ECOBD
K:
[4-99]
--------------------------------------------------------------------------------
L
Q
H
G
L
-
I
L
A
A
I
L
F
V
L
G
L
T
----------------
G
------
L
V-
I
R
R
N
L
L
F
M
L
I
G
L
E
I
---------
M
I
N
A
S
A
--------
L
A
-
F
V
V
A
G
S
Y
W
G
--------------------------
Q
T
D
---------
G
Q
V
M
Y
I
----------
L
A
I
S
L
A
A
A
E
A
S
I
G
L
A
L
-----
L
L
Q
L
H
R
R
R
Q
N
------
L
N
I
-
D
S
V
S
E
M
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
64.72
16%
-168
- C1 -
-
3RKO
-
NUOK_ECOBD
G:
[4-99]
--------------------------------------------------------------------------------
L
Q
H
G
L
-
I
L
A
A
I
L
F
V
L
G
L
T
----------------
G
------
L
V-
I
R
R
N
L
L
F
M
L
I
G
L
E
I
---------
M
I
N
A
S
A
--------
L
A
-
F
V
V
A
G
S
Y
W
G
--------------------------
Q
T
D
---------
G
Q
V
M
Y
I
----------
L
A
I
S
L
A
A
A
E
A
S
I
G
L
A
L
-----
L
L
Q
L
H
R
R
R
Q
N
------
L
N
I
-
D
S
V
S
E
M
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
64.53
24%
0
- C- -
-
4HEA
-
NQO11_THET8
S:
[2-94]
----------------------------------------------------------------------------------
S
Y
L
-
L
T
S
A
L
L
F
A
L
G
V
Y
----------------
G
------
V
L-
T
R
R
T
A
I
L
V
F
L
S
I
E
L
---------
M
L
N
A
A
N
--------
L
S
-
L
V
G
F
A
R
A
Y
---------------------------
G
L
D
---------
G
Q
V
A
A
L
----------
M
V
I
A
V
A
A
A
E
V
A
V
G
L
G
L
-----
I
V
A
I
F
R
H
R
E
S
------
T
A
V
-
D
D
L
S
E
L
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
63.39
24%
-176
- C1 -
-
4HE8
-
NQO11_THET8
K:
[2-94]
----------------------------------------------------------------------------------
S
Y
L
-
L
T
S
A
L
L
F
A
L
G
V
Y
----------------
G
------
V
L-
T
R
R
T
A
I
L
V
F
L
S
I
E
L
---------
M
L
N
A
A
N
--------
L
S
-
L
V
G
F
A
R
A
Y
---------------------------
G
L
D
---------
G
Q
V
A
A
L
----------
M
V
I
A
V
A
A
A
E
V
A
V
G
L
G
L
-----
I
V
A
I
F
R
H
R
E
S
------
T
A
V
-
D
D
L
S
E
L
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
63.13
18%
-133
- C1 -
-
2HSN
-
SYMC_YEAST
A:
[3-162]
-----------------------------------------------------------------MS
F
L
I
S
F
DKSKKHP
A
H
L
Q
L
A
-
N
N
L
K
I
A
L
A
L
E
Y
A
SKNL
K
P
E
V
D
N
DNA
A
M
E
L
------
R
--
N
T
K
E
P
F
L
L
F
D
A
N
A
I
---------
L
R
Y
V
M
D
DFEGQTS
D
K
Y
-
Q
F
A
L
A
S
L
Q
N
L
-
L
------------
Y
H
K
E
L
P
Q
Q
H
V
E
V
L
T
---------
N
K
A
I
E
N
YLVELKEPLT
T
T
D
L
I
L
F
A
N
V
Y
A
L
N
S
S
-----
L
V
H
S
K
F
P
E
L
P
------
S
K
V
-
H
N
A
V
A
L
A
------
K
K
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
Fugue
59.91
24%
-41
- C1 -
-
1KA5
-
PTHP_STAAU
A:
[1-88]
--------------------------------------------------------------------
M
E
Q
N
--------
S
Y
V
I
I
-
D
E
T
G
I
H
A
R
P
A
T
M
----------------
L
------
V
--
Q
T
A
S
K
F
D
S
D
I
Q
L
E
Y
---------
N
G
K
K
V
N
--------
L
K
S
I
M
G
V
M
S
L
G
V
G
-
K
------------
D
A
E
I
T
I
Y
A
D
-----------------------------------------------------------
G
S
------
D
E
S
-
D
A
I
Q
A
I
S
------
D
V
L
S
K
E
G
L
T
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
59.10
33%
-106
- C1 -
-
1XG4
1
PRPB_ECOLI
A:
[66-120]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
T
D
I
R
R
I
T
D
V
C
---------
S
L
P
L
L
V
----------
D
A
D
-
I
G
F
G
S
S
A
F
N
V
A
R
-----
T
V
K
S
M
I
K
A
G
A
A
G
L
H
I
E
D
Q
V
-
G
A
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
56.15
33%
-115
- C1 -
-
1MUM
-
PRPB_ECOLI
A:
[66-120]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
T
D
I
R
R
I
T
D
V
C
---------
S
L
P
L
L
V
----------
D
A
D
-
I
G
F
G
S
S
A
F
N
V
A
R
-----
T
V
K
S
M
I
K
A
G
A
A
G
L
H
I
E
D
Q
V
-
G
A
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
55.99
33%
-105
- C1 -
-
1OQF
-
PRPB_ECOLI
A:
[66-120]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
T
D
I
R
R
I
T
D
V
C
---------
S
L
P
L
L
V
----------
D
A
D
-
I
G
F
G
S
S
A
F
N
V
A
R
-----
T
V
K
S
M
I
K
A
G
A
A
G
L
H
I
E
D
Q
V
-
G
A
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
55.54
12%
-195
- C1 -
-
5LC5
-
NU4LM_BOVIN
K:
[4-95]
-----------------------------------------------------------------------------------
V
Y
-
M
N
I
M
M
A
F
T
V
S
L
V
----------------
G
------
L
L
M
Y
R
S
H
L
M
S
S
L
L
C
L
E
G
---------
M
M
L
S
L
F
--------
V
M
-
A
A
L
T
I
L
N
S
--------------------------
H
F
T
L
---------
A
S
M
M
P
I
----------
I
L
L
V
F
A
A
C
E
A
A
L
G
L
S
L
-----
L
V
M
V
S
N
T
Y
G
T
------
D
Y
V
-
Q
N
L
N
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
55.37
33%
-99
- C1 -
-
1XG3
1
PRPB_ECOLI
A:
[66-120]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
T
D
I
R
R
I
T
D
V
C
---------
S
L
P
L
L
V
----------
D
A
D
-
I
G
F
G
S
S
A
F
N
V
A
R
-----
T
V
K
S
M
I
K
A
G
A
A
G
L
H
I
E
D
Q
V
-
G
A
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
54.91
13%
-90
- C1 -
-
5AN3
-
SGT1_YEAST
A:
[3-134]
----------------------------------------------------------------V
E
K
D
L
K
T
A
--------
Y
K
A
L
Y
-
D
E
K
E
P
L
K
A
L
H
L
Y
----------------
D
------
E
--
I
L
K
G
S
P
T
N
L
T
A
L
I
F
---------
K
A
A
C
L
E
--------
K
L
-
Y
F
G
F
S
D
W
H
---
S
------------
D
A
T
M
E
N
A
K
E
L
L
D
K
A
---------
L
M
T
A
E
G
----------
D
R
S
K
I
G
L
V
N
F
R
Y
F
V
H
F
-----
F
N
I
K
D
Y
E
L
A
Q
------
S
Y
F
-
K
K
A
K
N
L
G
YVDDT
L
P
L
W
E
D
R
L
E
T
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
53.03
18%
-57
- C1 -
-
2MI2
-
?
A:
[1-104]
--------------------------------------------------------------------
M
F
D
I
--------
G
F
-------------------------------------------
S
E
L
L
L
V
F
I
I
G
L
V
V
---------
L
G
P
Q
R
----------
L
-
P
V
A
V
K
T
V
A
G
W
-
I
------------
R
A
L
R
S
L
A
T
T
V
Q
N
E
L
---------
T
Q
E
L
K
L
----------
Q
E
F
Q
D
S
L
K
K
V
E
K
A
S
L
T
-----
N
L
T
P
E
L
K
A
S
M
------
D
E
L
R
Q
A
A
E
S
M
K
------
R
S
Y
V
A
N
D
P
L
E
H----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
50.66
20%
-85
- C1 -
-
5FG0
1
LTN1_YEAST
A:
[4-410]
TDLGLGHNG
V
R
I
S
LNYFDGLPD
P
S
L
L
N
S
LYS
N
E
L
K
L
I
F
K
S
L
L
KRD
E
T
T
K
E
K
A
L
M
D
L
S
N
L
I
S
D
FNQNEY
F
F
N
D
--------
I
F
L
L
C
W
S
Q
I
Y
A
K
L
I
I
S
D
Y
----------------
K
------
V
--
I
R
L
Q
S
H
Q
I
T
I
M
L
V
K
S
L
RKKISKF
L
K
D
F
I
P
--------
L
I
-
L
L
G
T
C
E
L
D
Y
S
V
S
------------
K
P
S
L
N
E
L
T
E
C
F
N
K
D
---------
P
A
K
I
N
A
----------
L
W
A
V
F
Q
E
Q
L
L
N
L
V
K
E
I
-----
V
V
N
E
N
E
D
T
I
S
------
D
----------------
E
R
Y
S
S
K
E
E
S
E
F
R
Y
H
R
V
I
A
S
A
V
L
L
L
I
K
L
F
V
H
N
K
D
V
S
E
R
N
S
S
S
L
K
V
I
L
S
DE
S
I
W
K
L
LNLKNGQNT
N
A
Y
E
T
V
L
R
L
I
D
V
L
Y
T
R
G
Y
M
P
S
H
K
N
I
M
K
L
A
V
K
K
L
L
K
S
L
T
H
ITSKNILKVCPV
L
P
S
I
L
N
L
L
A
T
L
D
D
YEDGTIWSYDKS
S
K
E
K
V
L
K
F
L
S
V
S
R
T
S
PSPG
F
F
N
A
V
F
A
L
Y
S
S
T
KRHSFLDYYLE
W
L
P
F
W
Q
K
S
V
Q
R
L
N
E
K
GFSARN
S
A
E
V
L
N
E
F
W
T
N
F
L
K
F
A
E
D
SSEER
19
HHSearch
50.34
13%
-254
- C1 -
-
5LNK
-
NU4LM_SHEEP
K:
[5-86]
------------------------------------------------------------------------------------
Y
-
M
N
I
M
M
A
F
T
V
S
L
T
----------------
G
------
L
LM
Y
R
S
H
L
M
S
S
L
L
C
L
E
G
---------
M
M
L
S
L
F
--------
I
L
-
A
T
L
M
I
L
N
S
--------------------------
H
F
T
L
---------
A
S
M
M
P
I
----------
I
L
L
V
F
A
A
C
E
A
A
L
G
L
S
L
-----
L
V
M
V
S
N
T
Y
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
47.92
13%
-104
- C1 -
-
4GD3
-
CYBH_ECOLI
A:
[8-210]
----------------------------------------------------------VV
S
H
Y
V
F
E
A
P
V
R
I
W
--------
H
W
L
T
V
-
L
C
M
A
V
L
M
V
T
G
Y
F
----------------
I
G
KPL
P
S
V
--
S
G
E
A
T
Y
L
F
Y
M
G
Y
I
R
---------
L
I
H
F
S
A
--------
G
M
-
V
F
T
V
V
L
L
M
R
I
-
Y
------------
W
A
F
V
G
N
R
Y
S
R
Q
G
V
W
Y
E
I
R
W
Y
L
F
L
P
I
A
Q
A
A
----------
M
F
G
Y
F
L
M
S
V
F
M
I
I
T
G
F
-----
A
L
Y
S
E
H
S
Q
Y
A
------
I
F
A
-
P
F
R
Y
V
V
E
------
F
F
Y
W
T
G
G
N
S
M
D
I
H
S
W
H
R
L
G
M
W
L
I
G
A
F
V
I
G
H
V
Y
M
A
L
R
E
D
I
M
SD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
46.57
15%
-14
- C1 -
-
1FEW
-
DBLOH_HUMAN
A:
[12-184]
--------------------------------------------------------------------
S
L
S
S
--------
E
A
L
M
R
-
R
A
V
S
L
V
T
D
S
T
S
T
----------------
F
------
L
--
S
Q
T
-
T
Y
A
L
I
E
A
I
T
E
---------
Y
T
K
A
V
Y
--------
T
L
-
T
S
L
Y
R
Q
Y
T
S
L
-
L
GKMN
S
E
E
E
D
E
V
W
Q
V
I
I
G
A
R
A
E
M
T
S
K
H
---------
Q
E
Y
L
K
L
----------
E
T
---
T
W
M
T
A
V
G
L
S
E
M
-----
A
A
E
A
A
Y
Q
T
G
A
------
D
Q
A
-
S
I
T
A
R
N
H
------
I
Q
L
V
K
L
Q
V
E
E
V
H
Q
L
S
R
K
A
E
T
K
L
A
E
A
Q
I
E
E
L
K
Q
K
T
Q
E
E
G
E
E
R
A
E
S
E
Q
E
A
Y
L
RED----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
41.50
27%
-263
- C1 -
-
2JO1
-
PLM_HUMAN
A:
[21-35]
------------------------------------------------------------------------------------
L
-
V
I
A
G
I
L
F
I
L
G
I
L
----------------
I
------
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
41.08
28%
108
- C1 -
-
1ZZA
-
SNN_HUMAN
A:
[7-61]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
H
S
---------
P
T
T
G
V
V
----------
T
V
I
V
I
L
I
A
I
A
A
L
G
A
L
I
L
G
C
W
C
Y
L
R
L
Q
R
I
S
Q
S
------
E
D
E
-
E
S
I
V
G
D
G
------
E
T
K
E
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------