@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VLU1: (2017-11-04 )
MAGGQRLKRMADSVQRELSELIRQELKDPRLGGLVTISGVKVSPDLGYADVYVTVMGRELSDDQNEVAHRETLDILNKASGFLRQELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKAVQDLPKRESDDEE
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....-.....10....-----....20...-.....30.-.-......40........50---.........60.......-.70........80........90........100.......110.......120.......130.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MA
G
G
-
Q
R
L
K
R
M
A
D
S
V
Q
-----
R
E
L
S
E
L
I
R
Q
-
E
LKDPRLG-
G
-
L
V
T
I
S
G
V
K
VSPDLGY
A
D
----
V
Y
V
T
V
MGRELSD
D
Q
N
E
V
A
-
H
R
E
T
L
D
I
L
N
K
A
S
G
F
L
R
Q
E
L
S
R
R
I
K
T
RIT
P
R
L
R
F
H
YDKTNAY
G
N
Y
M
F
G
L
I
E
K
A
V
Q
DLPKRESDDEE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
91.94
34%
-182
- C- -
-
1JOS
-
RBFA_HAEIN
A:
[7-106]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
D
R
V
A
Q
E
I
Q
-----
K
E
I
A
V
I
L
Q
R
-
E
V
K
D
P
R
I
G
---
M
V
T
V
S
D
V
E
V
S
S
D
L
S
Y
A
K
----
I
F
V
T
F
L
F
-----
D
H
D
E
M
A
-
I
E
Q
G
M
K
G
L
E
K
A
S
P
Y
I
R
S
L
L
G
K
A
M
R
L
R
I
V
P
E
I
R
F
I
Y
D
Q
S
L
V
E
G
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
82.65
34%
-57
- C- -
-
1JOS
-
RBFA_HAEIN
A:
[7-106]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
D
R
V
A
Q
E
I
Q
-----
K
E
I
A
V
I
L
Q
R
-
E
V
K
D
P
R
I
G
---
M
V
T
V
S
D
V
E
V
S
S
D
L
S
Y
A
K
----
I
F
V
T
F
L
F
D
H
------
D
E
M
A
I
E
Q
G
M
K
G
L
E
K
A
S
P
Y
I
R
S
L
L
G
K
A
M
R
L
R
I
V
P
E
I
R
F
I
Y
D
Q
S
L
V
E
G
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
79.84
40%
-125
- C2 -
-
1KKG
-
RBFA_ECOLI
A:
[7-106]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
P
Q
R
V
A
Q
E
M
Q
-----
K
E
I
A
L
I
L
Q
R
-
E
I
K
D
P
R
L
G
-
M
-
M
T
T
V
S
G
V
E
M
S
R
D
L
A
Y
A
K
----
V
Y
V
T
F
L
-----
N
D
K
D
E
D
A
-
V
K
A
G
I
K
A
L
Q
E
A
S
G
F
I
R
S
L
L
G
K
A
M
R
L
R
I
V
P
E
L
T
F
F
Y
D
N
S
L
V
E
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
76.76
37%
49
* C2 *
-
2KZF
-
RBFA_THEMA
A:
[2-106]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
P
A
-
Y
R
K
A
M
L
E
S
E
I
Q
-----
K
L
L
M
E
A
L
Q
--
Q
L
R
D
P
R
L
K
K
D
-
F
V
T
F
S
R
V
E
L
S
K
D
K
R
Y
A
D
----
V
Y
V
S
F
L
G
T
P
------
E
-
E
-
R
K
E
T
V
E
I
L
N
R
A
K
G
F
F
R
T
F
I
A
K
N
L
R
L
Y
V
A
P
E
I
R
F
Y
E
D
K
G
I
E
A
S
V
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
75.97
30%
-171
- C2 -
-
2DYJ
-
RBFA_THET8
A:
[4-94]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
A
H
L
E
A
Q
L
K
-----
R
A
L
A
E
E
I
Q
A
--
L
E
D
P
R
L
F
-
L
--
L
T
V
E
A
V
R
L
S
K
D
G
S
V
L
S
----
V
Y
V
E
A
F
R
----------
E
-
E
E
G
A
L
R
A
L
S
R
A
E
R
R
L
V
A
A
L
A
R
R
V
R
M
R
R
L
P
R
L
E
F
L
P
W
R
A
S
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
75.74
32%
-167
- C2 -
-
2DYJ
-
RBFA_THET8
A:
[4-94]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
A
H
L
E
A
Q
L
K
-----
R
A
L
A
E
E
I
Q
--
A
L
E
D
P
R
L
F
---
L
L
T
V
E
A
V
R
L
S
K
D
G
S
V
L
S
----
V
Y
V
E
A
F
R
E
E
-----------
E
G
A
L
R
A
L
S
R
A
E
R
R
L
V
A
A
L
A
R
R
V
R
M
R
R
L
P
R
L
E
F
L
P
W
R
A
S
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
75.26
38%
-10
- C2 -
-
1KKG
-
RBFA_ECOLI
A:
[2-108]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
E
F
-
G
R
P
Q
R
V
A
Q
E
M
Q
-----
K
E
I
A
L
I
L
Q
R
-
E
I
K
D
P
R
L
G
-
M
-
M
T
T
V
S
G
V
E
M
S
R
D
L
A
Y
A
K
----
V
Y
V
T
F
L
N
D
K
------
D
E
D
A
V
K
A
G
I
K
A
L
Q
E
A
S
G
F
I
R
S
L
L
G
K
A
M
R
L
R
I
V
P
E
L
T
F
F
Y
D
N
S
L
V
E
G
M
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
75.07
35%
54
- C2 -
-
2KZF
-
RBFA_THEMA
A:
[2-99]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
P
A
-
Y
R
K
A
M
L
E
S
E
I
Q
-----
K
L
L
M
E
A
L
-
Q
-
Q
L
R
D
P
R
L
K
-
K
D
F
V
T
F
S
R
V
E
L
S
K
D
K
R
Y
A
D
----
V
Y
V
S
F
L
G
-------
T
P
E
E
-
R
K
E
T
V
E
I
L
N
R
A
K
G
F
F
R
T
F
I
A
K
N
L
R
L
Y
V
A
P
E
I
R
F
Y
E
D
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
74.62
41%
69
- C2 -
-
1KKG
-
RBFA_ECOLI
A:
[1-108]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
K
E
F
G
R
P
Q
R
V
A
Q
E
M
Q
-----
K
E
I
A
L
I
L
Q
R
-
E
I
K
D
P
R
L
G
-
M
-
M
T
T
V
S
G
V
E
M
S
R
D
L
A
Y
A
K
----
V
Y
V
T
F
L
N
D
K
-----
D
E
D
A
-
V
K
A
G
I
K
A
L
Q
E
A
S
G
F
I
R
S
L
L
G
K
A
M
R
L
R
I
V
P
E
L
T
F
F
Y
D
N
S
L
V
E
G
M
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
66.25
19%
-175
- C2 -
-
1PA4
-
RBFA_MYCPN
A:
[6-101]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
R
L
E
N
D
I
I
-----
R
L
I
N
R
T
V
I
H
-
E
I
Y
N
E
T
V
K
-
T
-
G
-
H
V
T
H
V
K
L
S
D
D
L
L
H
V
T
----
V
Y
L
D
C
Y
N
R
E
--------
Q
-
I
D
R
V
V
G
A
F
N
Q
A
K
G
V
F
S
R
V
L
A
H
N
L
Y
L
A
K
A
V
Q
I
H
F
V
K
D
K
A
I
D
N
A
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
63.94
19%
25
- C2 -
-
2E7G
-
RBFA_HUMAN
A:
[79-207]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSSGSSGR
K
E
D
H
-
A
R
L
R
A
L
N
G
L
L
Y
-----
K
A
L
T
D
L
L
C
T
-
P
E
V
S
Q
E
L
Y
-
D
L
N
V
E
L
S
K
V
S
L
T
P
D
F
S
A
C
R
----
A
Y
W
K
T
T
L
-------
S
A
E
Q
-
N
A
H
M
E
A
V
L
Q
R
S
A
A
H
M
R
H
L
L
M
S
Q
Q
T
L
R
N
V
P
P
I
V
F
V
Q
D
K
G
N
A
A
L
A
E
L
D
Q
L
L
A
V
A
------
D
S
G
P
S
S
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
63.69
18%
-175
- C2 -
-
1PA4
-
RBFA_MYCPN
A:
[6-101]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
R
L
E
N
D
I
I
-----
R
L
I
N
R
T
V
I
H
-
E
I
Y
N
E
T
V
--
K
-
T
G
H
V
T
H
V
K
L
S
D
D
L
L
H
V
T
----
V
Y
L
D
C
Y
N
R
E
------
Q
---
I
D
R
V
V
G
A
F
N
Q
A
K
G
V
F
S
R
V
L
A
H
N
L
Y
L
A
K
A
V
Q
I
H
F
V
K
D
K
A
I
D
N
A
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
58.09
20%
18
- C2 -
-
2E7G
-
RBFA_HUMAN
A:
[88-206]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
H
-
A
R
L
R
A
L
N
G
L
L
Y
-----
K
A
L
T
D
L
L
C
T
P
E
V
S
Q
E
L
Y
D
-
L
-
N
V
E
L
S
K
V
S
L
T
P
D
F
S
A
C
R
----
A
Y
W
K
T
T
L
S
A
------
E
-
Q
-
N
A
H
M
E
A
V
L
Q
R
S
A
A
H
M
R
H
L
L
M
S
Q
Q
T
L
R
N
V
P
P
I
V
F
V
Q
D
K
G
N
A
A
L
A
E
L
D
Q
L
L
A
V
A
D
S
G
P
S
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
54.72
18%
-153
- C2 -
-
1PU1
-
Y677_METTH
A:
[1-91]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
L
R
K
L
T
E
G
D
L
-----
D
E
I
S
S
F
L
H
N
-
T
I
S
D
F
I
L
K
----------
R
V
S
A
K
-
E
I
V
D
----
I
D
I
T
V
L
V
E
Y
-----------------------------
T
D
E
L
K
V
D
I
S
A
E
L
Y
L
D
-
E
L
S
D
A
D
P
G
I
V
D
E
A
V
D
A
A
Y
R
S
L
E
S
F
L
D
G
F
R
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
53.09
41%
-234
- C2 -
-
2DYJ
-
RBFA_THET8
A:
[12-55]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
-----
R
A
L
A
E
E
I
-
Q
-
A
L
E
D
P
R
L
--
F
-
L
L
T
V
E
A
V
R
L
S
K
D
G
S
V
L
S
----
V
Y
V
E
A
F
R
E
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
50.10
41%
-205
- C2 -
-
2R1C
-
RBFA_THET8
A:
[12-55]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
-----
R
A
L
A
E
E
I
-
Q
-
A
L
E
D
P
R
L
--
F
-
L
L
T
V
E
A
V
R
L
S
K
D
G
S
V
L
S
----
V
Y
V
E
A
F
R
E
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
47.07
30%
-153
- C3 -
-
5GZV
2
?
A:
[85-147]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
K
R
R
N
N
P
D
E
-----
S
N
L
A
Y
L
T
G
L
-
K
A
K
N
P
N
L
K
-
V
-
L
V
S
I
G
G
W
E
A
E
---
G
F
S
D
----
A
A
L
T
P
E
S
R
-------
E
V
F
-
A
N
S
A
L
D
F
M
N
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
46.75
30%
-141
- C3 -
-
5GZU
-
?
A:
[85-147]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
K
R
R
N
N
P
D
E
-----
S
N
L
A
Y
L
T
G
L
-
K
A
K
N
P
N
L
K
-
V
-
L
V
S
I
G
G
W
E
A
E
---
G
F
S
D
----
A
A
L
T
P
E
S
R
-------
E
V
F
-
A
N
S
A
L
D
F
M
N
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
44.65
30%
-143
- C3 -
-
5GZT
-
?
B:
[336-398]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
K
R
R
N
N
P
D
E
-----
S
N
L
A
Y
L
T
G
L
-
K
A
K
N
P
N
L
K
-
V
-
L
V
S
I
G
G
W
E
A
E
---
G
F
S
D
----
A
A
L
T
P
E
S
R
-------
E
V
F
-
A
N
S
A
L
D
F
M
N
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
39.88
14%
43
- C2 -
-
1MJG
-
DCMA_MOOTH
M:
[2-729]
TDFDKIFEGAIPEGKEPVALFREVYHGAITATSYAEILLNQAIRTYGPDHPVGYPDTAYYLPVIRCFSGEEVKKLGDLPPILNRKRAQVSPVLNFENARLAGEATWYAAEIIEALRYLKYKPDEPLLPPPWTGFIGDPVVRRFGIKMVDWTIPGEAIILGRAKDSKALAKIVKELMGMGFMLFICDEAVEQLLEENVKLGIDYIAYPLGNFTQIVHAANYALRAGMMFGGVTPGAREEQRDYQRRRIRAFVLYLGEHDMVKTAAAFGAIFTGFPVITDQPLPEDKQIPDWFFSVEDYDKIVQIAMETRGIKLTKIKLDLPINFGP
A
F
E
G
-
E
S
I
R
K
G
D
M
Y
V
E
MGGNR
T
P
A
F
E
L
V
R
T
-
V
S
E
S
E
I
T
D
-
G
-
K
I
E
V
I
G
P
D
I
D
Q
I
P
E
G
S
K
LPLG
I
L
V
D
I
Y
G
R
K
M
Q
A
D
F
E
G
V
L
-
E
R
R
I
H
D
F
I
N
Y
G
E
G
L
W
H
T
G
Q
R
N
I
N
W
L
R
V
S
K
D
A
V
A
K
G
F
R
F
K
N
Y
G
E
I
L
V
A
K
M
K
E
E
F
P
A
I
V
------
D
R
VQVTIFTDEAKVKEYMEVAREKYKERDDRMRGLTDETVDTFYSCVLCQSFAPNHVCIVTPERVGLCGAVSWLDAKASYEINHAGPNQPIPKEGEIDPIKGIWKSVNDYLYTASNRNLEQVCLYTLMENPMTSCGCFEAIMAILPECNGIMITTRDHAGMTPSGMTFSTLAGMIGGGTQTPGFMGIGRTYIVSKKFISADGGIARIVWMPKSLKDFLHDEFVRSSVEEGLGEDFIDKIADETIGTTVDEILPYLEEKGHPALTMDPIM