@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VLX6: (2017-11-05 )
MNFLKQSAFIAVFAFMGLPTVQAEEVATLPTIRVMAESELREEVGFVPFQEDKKVRQALQHREYKTHNDIQNALVPEGMTTVDYQPVMAQPDLSQLSPFLREYILAVAGGIQSSDPTNGLFEMLKPLQINRSNVDAYREGTMKVNLDDILKLQQQIQDGLKGR
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........---------20......-----..30-....--------.....----40..-----....----.-----.50----......----..60.......---.70.......------.80........90........--100------------------.....-.----.-..110....--.----..120------....------....-.130.......140..-...--..150.......160.---------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MN
F
L
K
Q
S
A
F
I
A
V
F
A
F
MGLP---------TV
Q
A
E
EVA-----TL
P
--
T
I
R
V
--------
M
A
E
S
E
----
L
R
E
E
-----VGFV----P-----FQ
E
----
D
K
K
V
R
Q
----
A
L
Q
HREYKTH
N
---
D
I
Q
N
A
LVPEG------MTTVDYQPVMAQP
D
L
S
Q
L
S
P
F
--
L
--------------------
R
E
Y
I
L
-
A
----
V
-AGGIQSSDP--T----
N
G
L
--------
F
E
M
L
------
K
P
LQ-INRS
N
V
D
A
Y
REG
T
M
K
V-
N
L
D
--
D
I
L
K
L
Q
Q
Q
I
Q
DGLKGR---------------------------------------------------------------------------------------
24
Fugue
59.48
27%
12
- C4 -
-
4RHJ
1
?
A:
[19-318]
-------------------------------------------------------------------------------------------------------------------SHMF
S
K
F
L
M
N
V
K
G
VTPRGSDWANRLGP
V
A
L
F
G
Y
G
A
GMPRRAP
L
L
D
F
F
L
Q
SPRDCDHY
A
E
L
T
I
H
DKGP
I
E
C
P
P
E
T
V
M
F
M
P
V
L
N
CGQMLDEAAGTETPT
S
D
E
W
Y
L
G
S
L
E
A
S
T
E
L
L
E
K
GYV
P
V
S
V
G
GDG
S
A
T
L
S
M
V
E
A
Y
K
R
L
F
P
S
D
D
I
V
I
V
H
F
S
A
R
P
---------
S
V
S
D
P
R
---------
S
--
P
L
R
V
--------
L
L
D
K
G
----
L
L
K
G
-----
V
V
S
V
GNRQ
V
-----
S
S
E
----
D
R
K
V
R
K
----
L
-
H
K
M
F
Y
M
D
M
R
---
D
I
R
N
----------------
D
Y
-
P
V
F
I
S
I
D
A
S
V
L
D
P
-------------------------
A
F
A
P
-
A
----
V
-
D
S
P
V
A
G
G
L
S
--
T
----
R
D
L
--------
L
H
I
M
------
N
G
I
R
G
P
K
V
V
G
I
D
V
Y
--------
G
Y
N
--
P
D
L
D
V
Y
R
K
D
N
V
G
L
T
A
I
A
L
S
K
I
I
K
E
G
I
LK---------------------------------------------------------------------------
22
Fugue
57.58
21%
60
- C5 -
-
5FHY
-
FLID2_PSEAE
A:
[21-249]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DIL
K
A
S
A
T
Q
S
A
V
A
G
T
Y
Q
I
Q
V
N
S
L
A
T
S
S
K
I
A
L
Q
A
I
A
D
P
A
N
A
K
F
N
S
G
T
L
N
I
S
V
G
D
-
T
-----
K
L
P
--
A
I
T
V
D
SSNNT
L
A
G
M
R
D
A
----
I
N
Q
A
G
K
EAG
V
S
A
T
----
I
-----
I
T
D
----
N
S
G
S
R
L
----
V
L
S
S
T
K
T
G
D
G
K
---
D
I
K
V
E
V
S
D
D
G
SGGNTS
L
S
Q
L
A
F
D
P
A
T
A
-
P
K
L
S
D
G
A
A
A
--
G
--------------------
Y
V
T
K
A
-
A
N
G
E
I
T
-
V
D
G
L
K
R
S
I
A
--
S
----
N
S
V
SDVIDG
V
S
F
D
V
K
A
VTEAG
K
P
I
T
-
L
T
V
S
R
D
D
A
G
V
K
D
N
V
K
K
-
F
V
E
--
A
Y
N
T
L
T
K
F
I
N
E
Q
T
V
V
T
K
V
G------------------------------------------------------------------------------------
15
Fugue
52.76
22%
28
* C7 *
-
4MT5
-
?
A:
[0-183]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
T
A
Y
V
K
Y
V
D
D
T
T
G
E
---------
T
L
R
Q
D
D
L
H
G
Y
TDE
T
I
P
YS
T
A
E
G
--------
I
K
K
Y
E
G
D
GY
V
L
V
S
-----
D
G
F
K
----
P
-----
G
T
K
F
G
VG
T
P
T
Y
E
V
----
H
F
K
H
G
M
T
H
T
D
A
TDK
N
A
E
Q
K
T
V
T
E
T
------
I
H
Y
V
D
E
N
N
Q
T
V
Q
P
D
S
T
T
A
V
T
F
--
K
--------------------
R
G
Y
T
T
D
N
----
V
-
T
G
K
V
V
S
Y
D
P
WT
V
----
D
G
N
QAD
S
K
T
--
F
A
A
V
------
P
S
P
A
-
V
E
G
Y
T
P
N
H
Q
Q
I
N
E
F
T
V
-
T
P
D
S
K
D
I
V
K
T
V
V
Y
V
G
D
P
-------------------------------------------------------------------------------------------
18
Fugue
51.25
10%
-98
- C5 -
-
3T7Z
1
Y694_METJA
A:
[1-119]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
Y
V
T
F
T
P
Y
-
G
A
F
G
V
K
D
N
K
---------
E
V
S
G
------------------------------------
L
E
D
-----
I
E
Y
K
----
K
-----
L
F
N
----
E
E
E
I
P
D
----
I
M
F
K
L
K
T
Q
-
P
N
---
K
I
A
D
E
L
K
E
E
W
------
G
D
E
I
K
L
E
T
L
S
T
E
P
--
F
N
I
G
E
F
--
L
--------------------
R
N
N
L
F
-
K
----
V
-
G
K
E
L
G
Y
F
N
N
--
Y
----
D
E
F
--------
R
K
K
M
------
H
Y
W
S
-
T
E
L
T
K
K
V
I
K
S
Y
A
-----------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
50.29
23%
-18
- C6 -
-
2HPM
-
DPO3A_THEAQ
A:
[497-626]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
A
S
K
A
A
L
K
D
V
A
R
V
Y
G
I
P
---------
H
K
K
A
E
E
L
A
-----
K
L
I
--
P
V
Q
F
--------
G
K
P
K
P
----
L
Q
E
A
--------------ELRAE
M
E
K
----
D
E
R
I
R
Q
V
I
E
V
A
M
R
L
E
G
L
N
R
H
A
---
S
V
H
A
A
G
V
-----------------
V
I
A
A
E
P
L
T
D
L
V
P
L
--
M
--------------------
R
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
50.08
16%
-41
- C7 -
-
3U4E
2
?
G:
[1-122]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
---------
T
F
K
L
A
A
C
V
-----
T
L
R
--
C
T
N
A
--------
T
I
N
G
S
----
L
T
E
E
-----
V
K
N
C
----
S
-----
F
N
I
----
T
T
E
L
R
D
----
K
K
Q
K
A
Y
A
L
F
Y
R
---
P
S
E
Y
I
L
I
N
C
Q
------
T
T
T
T
E
A
V
D
------
A
A
T
A
A
K
V
--
F
--------------------
K
Q
Y
A
N
-
D
----
N
G
I
D
G
E
W
T
Y
D
D
--
A
----
T
K
T
--------
F
T
V
T
------
E
G
L
E
-
V
L
---------------------------------------------------------------------------------------------------------------------------
19
Fugue
49.37
14%
-59
- C3 -
-
5I2X
-
ACD_HUMAN
A:
[1-150]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
R
L
V
L
R
P
W
I
R
E
L
I
L
-
G
S
E
---------
T
P
S
S
P
R
A
G
-----
Q
L
L
--
E
V
L
Q
--------
D
A
E
A
A
----
V
A
G
--------------
P
-----
S
H
A
----
P
D
T
S
D
V
----
G
A
T
L
L
V
S
D
G
T
H
---
S
V
R
C
L
V
T
R
E
A
------
L
D
T
S
D
W
E
E
E
F
G
------
F
R
G
T
--
E
--------------------
G
R
L
L
L
-
L
----
Q
-
D
C
G
V
H
V
Q
V
A
--
E
----
G
G
A
--------
P
A
E
F
------
Y
-
L
Q
-
V
D
R
F
S
L
L
P
T
E
Q
P
R
L
R
V
P
G
C
N
--
Q
D
L
D
V
Q
K
K
L
Y
D
C
L
E
E
----------------------------------------------------------------------------------------
2
PsiBlast_PDB
49.07
23%
-11
- C6 -
-
2HPI
-
DPO3A_THEAQ
A:
[497-626]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
A
S
K
A
A
L
K
D
V
A
R
V
Y
G
I
P
---------
H
K
K
A
E
E
L
A
-----
K
L
I
--
P
V
Q
F
--------
G
K
P
K
P
----
L
Q
E
A
--------------ELRAE
M
E
K
----
D
E
R
I
R
Q
V
I
E
V
A
M
R
L
E
G
L
N
R
H
A
---
S
V
H
A
A
G
V
-----------------
V
I
A
A
E
P
L
T
D
L
V
P
L
--
M
--------------------
R
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
48.81
16%
-82
- C5 -
-
5T51
-
?
A:
[3-98]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
P
T
M
--------
Q
S
T
S
L
----
L
T
E
H
-----
L
G
Y
P
----
P
-----
I
S
L
----
V
D
D
I
I
N
----
A
V
N
E
I
M
Y
K
C
T
N
---
A
M
E
K
Y
L
M
Q
R
N
------
I
I
G
K
K
D
F
S
D
E
I
K
I
G
T
A
K
L
E
S
L
--
L
--------------------
E
N
S
V
D
-
K
----
N
-
F
D
K
L
E
L
Y
V
L
--
R
----
N
I
L
---------
S
I
P
------
S
D
L
-------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
45.16
23%
16
- C6 -
-
4IQJ
2
DPO3A_THEAQ
A:
[497-613]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
A
S
K
A
A
L
K
D
V
A
R
V
Y
G
I
P
---------
H
K
K
A
E
E
L
A
-----
K
L
I
--
P
--------------
K
P
----
L
Q
E
A
--------------ELR
A
E
M
E
K
----
D
E
R
I
R
Q
V
I
E
V
A
M
R
L
E
G
L
N
R
H
A
---
S
V
H
A
A
G
V
-----------------
V
I
A
A
E
P
L
T
D
L
V
P
L
--
M
--------------------
R
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
41.43
28%
-143
- C6 -
-
4P5W
-
CMC2_HUMAN
A:
[200-306]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
A
I
D
F
R
D
I
M
V
T
I
R
P
H
V
L
T
P
F
--
V
--------------------
E
E
C
L
V
-
A
----
A
-
A
G
G
T
T
S
H
Q
V
--
S
F
S
Y
F
N
G
F
--------
N
S
L
L
------
N
N
M
E
-
L
I
R
--------------------------------------------------------------------------------------------------------------------------
10
HHSearch
40.19
63%
-77
- C1 -
-
2KIX
-
?
D:
[1-8]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
------
E
P
F
Q
-
I
L
---------------------------------------------------------------------------------------------------------------------------
21
Fugue
39.96
15%
55
- C5 -
-
4XA2
3
MALE_ECOLI
A:
[1-490]
MKIEEG
K
L
V
I
W
I
N
GDKG
Y
N
G
L
A
E
V
G
K
K
F
E
K
DTG
I
K
V
T
V
E
H
P
DK
L
E
E
K
F
P
Q
V
A
A
T
GDGPD
I
I
F
W
AHDR
F
G
G
Y
A
Q
S
GLL
A
E
I
T
P
A
A
A
F
Q
D
K
L
Y
P
F
T
W
D
A
V
RYNGKLI
A
Y
P
I
A
V
E
A
L
S
LIYNKDLLPNPPKTWEE
I
P
A
L
D
K
E
L
K
A
K
GKSA
L
M
F
NLQEPYFT
W
P
L
I
A
A
D
G
G
Y
A
F
KYAAGKYDIKDVGVDN
A
G
A
K
A
G
L
T
F
L
V
D
L
I
K
N
KHMNADTD
Y
S
I
A
E
A
A
F
N
K
GETA
M
T
I
N
G
PWA
W
S
N
I
D
T
SAVN
Y
G
V
T
V
L
P
T
F
K
G
Q
P
S
K
P
F
V
G
V
L
S
-
A
G
I
N
-------------
A
A
S
P
-----
N
K
E
--
L
A
K
E
--------
F
L
E
N
Y
----
L
L
T
D
-----
E
G
L
E
----
A
-----
V
N
K
----
D
K
P
L
G
A
V---
A
L
K
S
Y
E
E
E
L
A
K
---
D
---
P
R
I
A
A
T
------
M
E
N
A
Q
K
G
E
I
M
--
P
N
I
P
Q
M
S
A
F
--
W
--------------------
Y
A
V
R
T
-
A
----
V
-
I
N
A
A
S
G
R
Q
T
--
V
----
D
A
A
--------
L
A
A
A
------
Q
T
-
N
-
A
A
A
A
Y
Q
N
Y
I
A
K
S
Q
V
S
T
-
G
L
A
--
D
I
T
A
G
K
T
N
A
E
T
K
L
A
E
G
LTAALTDVEALGLQKSTNACS
T
I
T
T
S
IGTNGA
S
N
I
T
C
TLKGTSQINS
K
K
I
E
W
I
R
D
A
DNATNG
T
T
G
A
W
R
C
K
T
DVAENLRPKS
C
G
A
S
G
S
16
Fugue
39.13
22%
-108
* C6 *
-
2PQ4
-
NAPA_ECOLI
B:
[1-35]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
----
K
L
S
R
R
S
F
M
K
A
N
---
A
V
A
A
A
A
A
A
A
G
------
L
S
V
----
P
G
V
A
R
A
V
V
G
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
32.32
16%
4
* C5 *
-
1YSM
-
CYBP_MOUSE
A:
[1-55]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
---------
S
V
L
E
E
L
Q
K
-----
D
L
E
--
E
V
K
V
--------
L
L
E
K
S
----
T
R
K
R
-----
L
R
D
T
----
L
-----
T
S
E
----
K
S
K
I
E
T
----
E
L
K
N
K
M
Q
Q
K
S
Q
---
K
K
P
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
31.74
32%
50
- C6 -
-
2QJY
1
CY1_RHOSH
Q:
[95-145]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
N
A
P
D
L
S
L
M
A
K
A
--
R
AGFHGPMGTGISQLFNGIGG
P
E
Y
I
Y
-
S
----
V
-
L
T
G
F
P
-
E
E
P
--
P
----
K
C
-----------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
29.54
23%
-91
- C6 -
-
2LH0
-
RT106_YEAST
A:
[4-43]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
L
D
E
L
P
E
S
--
L
--------------------
S
R
K
I
G
-
T
----
V
-
V
R
---
V
L
P
S
--
S
----
L
E
I
--------
F
E
E
L
------
Y
K
Y
A
-
L
N
E
N
S
------------------------------------------------------------------------------------------------------------------------
7
HHSearch
28.30
16%
48
- C- -
-
4LTT
-
?
A:
[4-50]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
L
K
K
S
-
F
Q
K
D
F
D
K
L
L
L
N
GF
D
--------------------
D
S
V
L
N
-
E
----
V
-
I
L
T
L
R
K
K
E
P
--
L
----
D
P
Q
--------
F
Q
-
D
------
H
A
L
K
------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
28.05
28%
-83
- C6 -
-
1G9Q
-
ADPP_ECOLI
A:
[104-125]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
E
D
--------
V
A
R
R
E
----
A
I
E
E
-----
A
G
L
I
----
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
26.82
28%
-65
- C6 -
-
1G0S
-
ADPP_ECOLI
A:
[104-129]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
E
D
--------
V
A
R
R
E
----
A
I
E
E
-----
A
G
L
I
----
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------