@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VM91: (2017-11-06 )
MATAIENRARQLKNAKRGGYAPTIAKDVNKHKVQKIRRALDEARRYVSELNDETVIFDDQDARQKAEGAKAIIEMFEAALSGA
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10...-.....-.20.......--.30-...----...-------...----40........50..-----...----...60---......---.---------.70---........80..------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MA
T
A
I
E
N
R
A
R
-
Q
L
K
-NAKRG-GYA
P
T
I
A
K
D
V
--
N
K
--
H
K
V
----
Q
K
I
-------
R
R
A
----
L
D
E
A
R
R
Y
V
S
ELND
E
-----
T
V
I
----FDD
Q
D
---
A
R
Q
K
A
E
---
G
---------
A
K
A
---
I
I
E
M
F
E
A
A
LSGA------------------------------------------------------------------
30
Fugue
65.78
19%
-50
* C5 *
-
5FCM
3
?
A:
[3-70]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
I
D
V
D
R
T
L
A
-
V
L
R
-
R
K
L
E
A
L
G
Y
S
D
P
L
E
----------------------------------
P
A
S
L
Q
L
V
Q
K
L
V
E
D
-----
L
V
H
----
T
T
D
S
Y
---
T
A
V
K
Q
Q
---
C
---------
A
K
Q
---
A
Q
E
I
A
A
F
D
T
R
L
-------------------------------------------------------------------
9
PsiBlast_PDB
61.44
24%
20
- C6 -
-
3BKS
1
?
A:
[42-111]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
G
-
K
V
V
R
S
V
V
L
D
F
--
N
D
--
L
K
I
----
S
E
I
-------
E
L
A
----
V
T
S
T
A
D
Y
P
A
E
R
I
D
A
-----
S
I
T
----
I
D
D
N
D
F
Y
L
V
A
T
K
E
T
---
S
---------
F
A
A
---
L
I
E
Q
G
K
V
D
I
T
G
-------------------------------------------------------------------
8
PsiBlast_PDB
61.10
24%
24
* C6 *
-
3BKR
1
?
A:
[42-111]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
G
-
K
V
V
R
S
V
V
L
D
F
--
N
D
--
L
K
I
----
S
E
I
-------
E
L
A
----
V
T
S
T
A
D
Y
P
A
E
R
I
D
A
-----
S
I
T
----
I
D
D
N
D
F
Y
L
V
A
T
K
E
T
---
S
---------
F
A
A
---
L
I
E
Q
G
K
V
D
I
T
G
-------------------------------------------------------------------
2
PsiBlast_PDB
58.70
34%
43
- C5 -
-
5CE7
1
CTK3_SCHPO
A:
[72-126]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
-
N
G
L
T
G
-
G
Y
L
N
M
I
S
R
D
I
--
C
K
L
V
Q
N
V
----
A
P
I
-------
G
A
A
G
A
A
N
A
P
E
V
R
K
V
L
Q
S
L
H
E
K
-----
K
V
I
----
D
D
N
Q
-----------------------------------------------------------------------------------------------------------
36
Fugue
57.40
10%
0
- C- -
-
1FJG
-
RS20_THET8
T:
[8-106]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RNLSALKRH
R
Q
S
L
K
R
R
L
R
N
-
K
A
K
-
K
S
A
I
K
-
T
L
S
K
K
A
V
Q
L
A
--
Q
E
--
G
K
A
----
E
E
A
-------
L
K
I
----
M
R
K
A
E
S
L
I
D
K
A
A
K
G
-----
S
T
L
----
H
K
N
A
A
---
A
R
R
K
S
R
---
L
---------
M
R
K
---
V
R
Q
L
L
E
A
A
G
A
P
L
IGGGLSA-----------------------------------------------------------
28
Fugue
57.03
12%
-
- C5 -
-
3SJR
-
?
A:
[47-172]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ISL
S
Q
G
A
Q
A
A
A
L
L
F
S
A
A
M
D
Q
I
S
R
L
A
ELDIEPVRLPESE
L
T
G
D
S
H
S
Q
H
L
L
L
G
M
E
I
L
M
E
L
Y
R
Q
-
Q
H
P
D
W
T
A
P
A
I
--
R
Q
--
A
F
A
----
P
L
A
-------
R
A
G
----
L
E
R
G
Y
Q
E
A
C
Q
V
L
R
Q
-----
L
N
V
----
Y
T
P
A
V
---
A
G
Q
L
Q
G
---
L
---------
L
L
L
---
T
Q
R
L
F
E
E
R
L
Q
I
A
------------------------------------------------------------------
1
PsiBlast_PDB
56.75
27%
76
- C5 -
-
1BXB
-
XYLA_THET8
A:
[205-277]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
-
R
P
E
R
F
-
G
L
N
P
E
F
A
H
E
T
M
A
G
L
--
N
F
V
----
H
A
V
-------
A
Q
A
----
L
D
A
G
K
L
F
H
I
D
L
N
D
Q
-----
R
M
S
----
R
F
D
Q
D
---
L
R
F
G
S
E
---
N
---------
L
K
A
A
F
F
L
V
D
L
L
E
S
S
----------------------------------------------------------------------
35
Fugue
55.52
16%
-94
- C5 -
-
5J6X
-
?
A:
[7-72]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
A
E
N
E
I
E
M
R
-
I
C
D
-
Y
L
R
R
H
-
G
R
S
T
--
V
Q
D
I
--
F
K
--
E
--------
L
-------
K
L
E
----
K
S
T
V
N
R
H
L
Y
S
L
Q
A
S
-----
K
Q
V
----
F
K
T
V
E
--------
D
---
N
---------
K
R
P
---
V
W
D
L
V
E
------------------------------------------------------------------------
29
Fugue
55.21
14%
76
- C5 -
-
1HX1
-
B:
[1-112]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GNS
P
Q
E
E
V
E
L
K
K
L
K
H
L
E
K
S
V
E
K
I
A
D
Q
L
E
-
E
L
N
-
K
E
L
T
G
-
I
Q
Q
G
F
L
P
K
D
L
--
Q
A
--
E
A
L
C
K
L
D
R
R
V
-------
K
A
T
----
I
E
Q
F
M
K
I
L
E
E
I
D
T
L
-----
I
L
P
----
E
N
F
K
D
---
S
R
L
K
R
K
---
G
---------
L
V
K
---
K
V
Q
A
F
L
A
E
C
D
T
V
E
Q
N
I
CQE-----------------------------------------------------------
33
Fugue
54.76
16%
129
- C5 -
-
1IRX
-
SYK_PYRHO
A:
[3-523]
H
W
A
D
Y
I
A
D
K
I
I
R
ERGEKE
K
Y
V
V
E
S
G
I
T
PSGYVH
V
G
N
F
R
E
L
F
T
A
Y
I
V
G
H
A
L
R
D
K
G
Y
E
V
R
H
I
H
M
W
DDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHES
Y
A
E
H
F
M
R
K
F
E
E
E
V
E
K
L
G
I
E
V
D
L
L
Y
A
S
E
L
Y
K
R
GEY
S
E
E
I
R
L
A
F
E
K
R
D
K
I
M
E
I
L
N
K
Y
R
E
I
A
KQPPLPENWWP
A
M
V
Y
CPEHR
R
E
A
E
I
I
E
WDGG
W
K
V
K
Y
K
C
P
E
G
H
E
G
W
V
D
IRSGNVKLR
W
R
V
D
W
P
M
R
W
S
H
F
GVD
F
E
P
A
G
KDHLVAGS
S
Y
D
T
G
K
E
I
I
K
E
V
YG
K
E
A
P
L
S
L
M
Y
E
F
V
G
I
K
GQNVIL
L
S
D
L
Y
E
V
LE
P
G
L
V
R
F
I
Y
A
R
H
RPN
K
E
I
K
I
DLGLG
I
L
N
L
Y
D
E
F
E
K
V
E
R
I
Y
F
GVEGE
E
L
R
R
T
Y
E
L
S
MPKKPERLVAQAP
F
R
F
L
A
V
L
V
Q
L
P
H
L
T
E
E
D
-
I
I
N
-
V
L
I
K
Q
-
G
H
---
I
P
R
D
L
--
S
K
--
E
D
V
----
E
R
V
-------
K
L
R
----
I
N
L
A
R
N
W
V
K
K
Y
A
P
E
-----
D
V
K
----
F
S
I
L
E
---
K
P
P
E
V
E
---
V
---------
S
E
D
---
V
R
E
A
M
N
E
V
A
E
W
L
E
N
H
EEFS
V
E
E
F
N
N
I
L
F
E
V
A
K
R
R
GIS
S
R
E
W
F
S
T
L
Y
R
L
F
IGKERGPR
L
A
S
F
L
A
S
LD
R
S
F
V
I
K
R
L
R
LEG
24
HHSearch
52.70
15%
-141
- C5 -
-
2ETS
-
?
A:
[37-89]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
Q
Q
D
H
D
F
Y
Q
T
V
---
K
--
P
Y
T
----
E
H
I
-------
D
S
I
----
L
N
E
I
K
-
L
H
R
----------
E
F
I
----
I
E
V
P
-----
Y
M
N
S
R
---
K
---------
F
E
L
---
L
I
A
N
I
E
Q
L
----------------------------------------------------------------------
4
PsiBlast_PDB
52.66
24%
4
- C5 -
-
1W27
-
PAL1_PETCR
A:
[34-90]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
A
M
--
T
G
--
S
H
L
----
D
E
V
-------
K
K
M
----
V
A
E
Y
R
K
P
V
V
K
L
G
G
E
-----
T
L
T
----
I
S
Q
V
A
---
A
I
S
A
R
D
---
G
---------
S
G
V
---
T
V
E
L
S
E
A
A
R
A
G
-------------------------------------------------------------------
11
HHSearch
46.87
20%
-7
- C5 -
-
4Q7I
1
?
A:
[226-276]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
W
D
E
-
I
F
G
-
A
L
K
E
I
-
G
Y
D
G
T
I
V
M
E
P
--
F
M
--
R
T
G
----
G
S
V
-------
S
R
A
----
V
C
V
W
R
D
L
S
N
G
A
T
D
E
-----
E
M
D
----
E
--------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
45.65
31%
19
- C5 -
-
4RGK
-
?
A:
[42-92]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
--
Q
Q
V
----
M
E
I
-------
R
R
N
----
L
A
E
G
K
N
P
V
P
Q
L
H
A
D
-----
D
I
I
N
GKV
T
E
E
Q
K
---
A
Q
I
K
Q
R
---
G
---------
C
C
A
---
I
L
G
V
F
-------------------------------------------------------------------------
34
Fugue
45.22
18%
36
- C5 -
-
2NAS
-
?
A:
[1-110]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
P
S
F
A
P
G
T
L
-
V
W
L
-
K
Q
D
R
F
-
P
W
W
P
G
F
V
M
D
P
--
D
E
--
V
R
D
----
I
T
L
P
E
GSD
V
W
V
C
C
----
L
P
R
D
S
L
T
L
S
A
A
N
S
E
DEG
Q
I
R
Y
F
----
L
P
D
R
D
---
E
G
M
M
E
E
---
G
KLD
A
S
C
A
V
A
I
E
E
---
A
I
Q
L
Y
E
E
Q
L
K
A
Q
A
GGTNE------------------------------------------------------------
12
HHSearch
45.15
10%
-115
- C- -
-
2HUJ
-
?
A:
[24-82]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
R
E
E
-
E
K
P
F
D
F
Y
K
D
M
---
K
--
P
F
V
----
D
E
A
-------
K
R
C
----
A
D
D
F
L
E
L
A
I
----------
P
W
V
----
N
T
E
R
P
---
P
Y
L
G
E
L
---
Q
---------
L
R
Q
---
A
C
D
N
V
Q
M
T
----------------------------------------------------------------------
22
HHSearch
44.47
12%
-101
- C5 -
-
2HFI
-
YPPE_BACSU
A:
[26-84]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
G
K
N
S
-
N
H
S
Y
D
F
F
E
T
I
---
K
--
P
A
V
----
E
E
N
-------
D
E
L
----
A
A
R
W
A
E
G
A
L
----------
E
L
I
----
K
V
R
R
P
---
K
Y
V
H
K
E
---
Q
---------
I
E
A
---
V
K
D
N
F
L
E
-----------------------------------------------------------------------
27
Fugue
43.95
18%
34
- C4 -
-
5U1T
-
B:
[1-117]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
I
E
I
A
P
Q
R
Q
-
E
P
L
-
P
Y
V
P
E
-
G
Y
S
P
F
Q
Q
D
D
I
--
E
K
--
L
K
T
----
F
N
S
-------
P
Y
K
----
L
D
L
D
K
V
D
L
L
P
L
E
Q
-------------
I
E
G
L
D
---
P
E
E
L
E
D
---
L
---------
V
T
----------------------------------------------------------------------------------
21
HHSearch
43.73
12%
-68
- C5 -
-
2IM8
-
YPPE_BACSU
A:
[26-84]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
G
K
N
S
-
N
H
S
Y
D
F
F
E
T
I
---
K
--
P
A
V
----
E
E
N
-------
D
E
L
----
A
A
R
W
A
E
G
A
L
----------
E
L
I
----
K
V
R
R
P
---
K
Y
V
H
K
E
---
Q
---------
I
E
A
---
V
K
D
N
F
L
E
-----------------------------------------------------------------------
5
PsiBlast_PDB
39.90
30%
73
- C5 -
-
5U1G
1
?
D:
[159-207]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
----
K
A
F
-------
R
T
A
----
I
T
Q
R
Q
V
Y
V
K
S
I
L
D
G
-----
D
S
V
----
F
E
S
S
D
---
G
A
A
K
G
E
IEI
L
---------
T
K
E
---
I
V
R
I
F
E
A
-----------------------------------------------------------------------