@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VME0: (2017-11-07 )
MYDEECPIMANDNHNQVLDEHTEVVVEGDKASAKRARKVKPKTSDVGSTASLFGIAPYQPKKNEEYMSEGQLEHFRQILQTWKAELMSEVDRTLNTMQDESTALPDVNDRATQEEEFAIELRTRDRERKLIRKIEQSLEAIKNEDYGFCETCGIEIGLRRLEARPTATLCIDCKTLAEIKEKQNNG
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20..----------------.....--.30........40.-.-......50........60------------........70...-.-....---80........90........100.-----......110..--.....120.......130.......140----------------..-...--....----------150.......------160.......170.......180....-----------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYDEEC
P
I
M
ANDNH
N
Q
V
L
D
EHT
E
----------------
V
V
V
EG--DKA
S
A
K
RARKVKPK-T-SDVGSTA
S
L
FGIAPYQPK------------K
N
E
E
Y
M
SEG
Q
L
E
H
-
F
-
R
Q
I
L
---
Q
T
W
K
A
E
L
M
S
E
V
D
R
T
L
N
T
MQDESTA-----LPDVNDRATQE--E
E
F
A
I
E
L
RT
R
D
R
E
R
K
L
I
R
K
I
E
Q
S
L
E
A
------------------
I
K-NED--YG
F
C
----------
E
T
C
G
I
E
I
G
L
R
------
R
LEARP
T
A
T
L
C
I
D
C
K
T
L
A
E
I
K
E
KQNNG-----------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
86.15
62%
-75
- C2 -
-
1TJL
-
DKSA_ECOLI
A:
[8-151]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-
T
-
S
S
L
-
S
I
L
A
I
A
G
V
E
P
Y
Q
E
K
------------
P
G
E
E
Y
M
N
E
A
Q
L
A
H
-
F
-
R
R
I
L
---
E
A
W
R
N
Q
L
R
D
E
V
D
R
T
V
T
H
M
Q
D
E
A
A
N
-----
F
P
D
P
V
D
R
A
A
Q
E
--
E
E
F
S
L
E
L
R
N
R
D
R
E
R
K
L
I
K
K
I
E
K
T
L
K
K
------------------
V
E
-
D
E
D
--
F
G
Y
C
----------
E
S
C
G
V
E
I
G
I
R
------
R
L
E
A
R
P
T
A
D
L
C
I
D
C
K
T
L
A
E
I
R
E
K
Q
M
A
G
-----------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
85.53
62%
-70
- C2 -
-
5VSW
1
?
M:
[12-151]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
S
I
L
A
I
A
G
V
E
P
Y
Q
E
K
------------
P
G
E
E
Y
M
N
E
A
Q
L
A
H
-
F
-
R
R
I
L
---
E
A
W
R
N
Q
L
R
D
E
V
D
R
T
V
T
H
M
Q
D
E
A
A
N
-----
F
P
D
P
V
D
R
A
A
Q
E
--
E
E
F
S
L
E
L
R
N
R
D
R
E
R
K
L
I
K
K
I
E
K
T
L
K
K
------------------
V
E
-
D
E
D
--
F
G
Y
C
----------
E
S
C
G
V
E
I
G
I
R
------
R
L
E
A
R
P
T
A
D
L
C
I
D
C
K
T
L
A
E
I
R
E
K
Q
M
A
G
-----------------------------------------------------------------------------------------------------------------
13
Fugue
85.01
60%
-73
- C2 -
-
1TJL
-
DKSA_ECOLI
A:
[7-151]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-
K
-
T
S
S
L
S
I
L
A
I
A
G
V
E
P
Y
Q
E
K
------------
P
G
E
E
Y
M
N
E
A
Q
L
A
H
-
F
-
R
R
I
L
---
E
A
W
R
N
Q
L
R
D
E
V
D
R
T
V
T
H
M
Q
D
E
A
A
N
-----
F
P
D
P
V
D
R
A
A
Q
E
--
E
E
F
S
L
E
L
R
N
R
D
R
E
R
K
L
I
K
K
I
E
K
T
L
K
K
------------------
V
E
-
D
E
D
--
F
G
Y
C
----------
E
S
C
G
V
E
I
G
I
R
------
R
L
E
A
R
P
T
A
D
L
C
I
D
C
K
T
L
A
E
I
R
E
K
Q
M
A
G
-----------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
84.17
62%
-88
- C2 -
-
5W1T
-
?
M:
[12-151]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
S
I
L
A
I
A
G
V
E
P
Y
Q
E
K
------------
P
G
E
E
Y
M
N
E
A
Q
L
A
H
-
F
-
R
R
I
L
---
E
A
W
R
N
Q
L
R
D
E
V
D
R
T
V
T
H
M
Q
D
E
A
A
N
-----
F
P
D
P
V
D
R
A
A
Q
E
--
E
E
F
S
L
E
L
R
N
R
D
R
E
R
K
L
I
K
K
I
E
K
T
L
K
K
------------------
V
E
-
D
E
D
--
F
G
Y
C
----------
E
S
C
G
V
E
I
G
I
R
------
R
L
E
A
R
P
T
A
D
L
C
I
D
C
K
T
L
A
E
I
R
E
K
Q
M
A
G
-----------------------------------------------------------------------------------------------------------------
23
HHSearch
83.83
62%
-70
- C2 -
-
1TJL
-
DKSA_ECOLI
D:
[10-150]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
L
S
I
L
A
I
A
G
V
E
P
Y
Q
E
K
------------
P
G
E
E
Y
M
N
E
A
Q
L
A
H
-
F
-
R
R
I
L
---
E
A
W
R
N
Q
L
R
D
E
V
D
R
T
V
T
H
M
Q
D
E
A
A
N
-----
F
P
D
P
V
D
R
A
A
Q
E
--
E
E
F
S
L
E
L
R
N
R
D
R
E
R
K
L
I
K
K
I
E
K
T
L
K
K
------------------
V
E
-
D
E
D
--
F
G
Y
C
----------
E
S
C
G
V
E
I
G
I
R
------
R
L
E
A
R
P
T
A
D
L
C
I
D
C
K
T
L
A
E
I
R
E
K
Q
M
A
------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
68.11
40%
-71
- C2 -
-
4IJJ
-
?
A:
[16-131]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
M
D
E
A
Q
Q
D
F
-
F
-
R
D
L
L
---
L
R
Q
R
Q
E
L
Q
A
R
I
E
G
E
F
G
E
L
R
D
L
E
R
P
------
S
D
E
A
D
L
A
S
R
E
--
E
Q
R
Q
W
Q
L
R
L
L
E
R
E
K
K
L
L
D
K
I
D
E
A
L
E
R
------------------
L
A
-
R
G
D
--
Y
G
W
C
----------
Q
E
T
G
E
P
I
G
L
R
------
R
L
L
L
R
P
T
A
T
L
C
I
E
A
K
E
R
Q
E
K
R
E
R
---------------------------------------------------------------------------------------------------------------------
24
HHSearch
66.45
38%
-74
- C2 -
-
4IJJ
-
?
B:
[12-132]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
D
A
A
Y
M
D
E
A
Q
Q
D
F
-
F
-
R
D
L
L
---
L
R
Q
R
Q
E
L
Q
A
R
I
E
G
E
F
G
E
L
R
D
-
L
E
R
-----
P
S
D
E
A
D
L
A
S
R
E
--
E
Q
R
Q
W
Q
L
R
L
L
E
R
E
K
K
L
L
D
K
I
D
E
A
L
E
R
------------------
L
A
-
R
G
D
--
Y
G
W
C
----------
Q
E
T
G
E
P
I
G
L
R
------
R
L
L
L
R
P
T
A
T
L
C
I
E
A
K
E
R
Q
E
K
R
E
R
H
--------------------------------------------------------------------------------------------------------------------
25
HHSearch
48.69
23%
-47
- C2 -
-
2KQ9
-
?
A:
[4-111]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
S
M
N
V
E
S
-
Y
-
E
K
I
L
---
R
D
R
Q
R
E
L
Y
R
R
L
H
K
I
E
A
D
F
E
E
--
P
R
-----
N
P
D
D
E
D
R
A
S
E
R
--
S
N
D
E
V
L
D
E
L
G
Q
V
G
Q
D
E
L
R
A
I
D
A
A
L
A
R
------------------
I
A
-
S
G
T
--
F
G
T
C
----------
V
K
C
G
K
R
I
S
E
D
------
R
L
K
A
V
P
Y
T
P
F
C
Q
E
C
A
A
A
---------------------------------------------------------------------------------------------------------------------------
20
Fugue
41.54
14%
39
- C2 -
-
4QVU
1
?
A:
[38-254]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D
I
L
A
T
E
G
S
I
I
W
L
K
N
K
F
P
T
L
K
D
T
F
Q
----------------
T
V
L
I
E
--
T
D
N
C
E
D
H
I
A
T
Y
T
E
E
-
H
M
R
----
S
L
I
R
F
S
I
K
H
W
L
N
L
Q
K
NEEFT
S
V
I
L
Y
K
N
H
G
P
F
S
G
G
S
L
H
H
A
H
M
Q
I
I
G
M
KY
V
N
Y
L
D
N
V
E
Q
D
N
F
Q
G
V
I
V
Q
K
N
E
H
I
E
-----
L
N
I
S
D
R
P
I
I
G
F
--
T
E
F
N
I
I
I
E
D
I
G
C
I
D
E
L
A
N
Y
I
Q
Q
T
V
R
Y
------------------
I
L
-
T
D
F
--
H
K
G
C
----------
S
S
Y
N
L
F
F
Y
Y
L
NE
K
I
I
C
K
V
V
P
R
F
V
V
S
P
L
Y
V
G
Y
K
I
P
Q
V
S
T
K
I
E
D
V
K
I
Q
L
A
A
Y
F
TK-------------------------------------------------------------------------------------------------------
17
Fugue
41.50
20%
43
- C4 -
-
4NNB
-
?
A:
[4-527]
T
S
L
Y
I
T
A
A
P
I
GA
V
P
K
F
L
DPFEATFIP
S
F
L
L
E
GFFD
A
D
R
C
A
S
I
A
A
D
L
K
T
D
G
W
E
V
V
P
A
G
G
R
L
L
Q
V
GHAQPIAHFP
K
P
W
L
A
A
L
S
N
K
L
A
R
R
I
V
L
Q
L
T
T
Y
G
W
I
V
S
EQG
D
L
L
W
EHE
R
Q
H
H
Y
L
P
P
A
L
I
E
A
I
E
K
E
S
P
A
L
L
K
N
M
E
E
A
GW
I
A
C
A
A
GYWQAGKARSPYLPIT
P
E
A
I
T
E
E
T
I
R
S
M
R
A
GAA
V
V
H
L
H
T
R
D
LSD
R
R
R
I
E
I
P
GL
G
V
V
T
V
G
SQRNQIV
L
D
D
Y
D
A
I
V
P
M
V
K
K
R
E
P
A
A
I
L
N
L
S
T
S
----------------
V
R
G
D
R
--
H
G
A
R
S
K
L
R
R
A
H
L
K
F
-
Y
-
D
D
V
G
S
A
P
E
V
A
S
L
S
P
A
A
V
V
F
QG
G
G
G
Y
-----
D
N
A
P
D
F
L
D
A
Q
F
D
H
-
F
-
E
R
V
---------
G
T
R
P
E
V
E
V
F
N
H
A
I
V
D
N
A
T
S
-----
L
-----------------------
Y
R
D
R
L
L
R
T
----------------------------
G
K
P
--
V
L
F
M
----------
L
V
A
G
V
D
Q
Y
R
R
D-----
P
I
T
G
E
V
E
D
D
S
L
I
A
R
V
V
R
E
E
I
S
S
L
L
A
D
E
S
A
D
S
H
R
R
A
V
E
L
A
I
G
Q
L
R
P
V
V
E
R
L
R
A
S
F
PV
S
K
I
S
I
L
L
P
GPMQNLL
V
D
V
A
L
G
L
GLD
G
I
R
V
G
LEDGL
T
V
N
D
ARVPGG
V
R
K
A
RG
T
W
E
Q
V
S
L
V
R
E
E
L
L
G
R
G
A
T
I
L
T
A
A
Q
V
R
D
M
F
GLGI
6
PsiBlast_PDB
41.31
26%
43
- C2 -
-
2KQ9
-
?
A:
[9-108]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
S
-
Y
-
E
K
I
L
---
R
D
R
Q
R
E
L
Y
R
R
L
H
K
I
E
A
D
F
E
E
P
R
N
-------
P
D
D
E
D
R
A
S
E
R
SN
D
E
V
L
D
E
L
G
Q
V
G
Q
D
E
--
L
R
A
I
D
A
A
L
A
R
------------------
I
A
-
S
G
T
--
F
G
T
C
----------
V
K
C
G
K
R
I
S
E
D
------
R
L
K
A
V
P
Y
T
P
F
C
Q
E
C
------------------------------------------------------------------------------------------------------------------------------
22
Fugue
41.15
17%
-30
- C- -
-
3TOW
-
MB12B_HUMAN
A:
[47-198]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
P
I
T
G
----------------
V
G
V
V
A
--
S
R
N
R
A
P
T
G
Y
D
V
V
A
Q
-
T
-
A
D
-
G
V
D
A
D
L
W
K
D
G
L
F
K
S
K
------------
V
T
----------
R
-
Y
-
L
C
F
T
---
R
S
--------
F
S
K
E
N
S
H
L
G
N
V
L
V
D
-----
M
K
L
I
D
I
K
D
T
L
P
--
V
G
F
I
P
I
Q
E
T
V
D
T
Q
E
V
A
F
R
K
-
K
R
L
C
I
K
------------------
F
I
-
P
R
D
--
S
T
E
A
----------
A
I
C
D
I
R
I
M
G
R
------
T
K
Q
A
P
P
Q
Y
T
F
I
G
E
L
N
S
M
G
I
W
Y
R
M
G
H
H
H
HHH--------------------------------------------------------------------------------------------------------------
21
Fugue
40.68
18%
48
- C2 -
-
4XLG
-
SLX1_CANGA
A:
[3-300]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EFQQIPD
F
Y
G
C
Y
L
L
Q
S
I
S
K
R
Q
S
F
Y
I
G
S
T
P
N
P
V
R
R
L
R
Q
H
N
G
SLSRTKRDGTRPWEMV
A
I
V
Y
G
FP
S
R
I
A
A
L
Q
F
Q
H
A
W
Q
H
G
T
-
R
Y
I
S
I
H
H
K
L
A
M
I
T
S
L
L
K
N
------------
E
Y
F
R
Y
M
-
D
L
T
L
H
F
-
F
N
Q
K
V
E
---
E
I
W
K
N
D
K
F
N
V
S
N
Y
T
V
S
L
S
Q
D
A
L
T
E
INNDT
I
D
D
I
M
D
V
N
E
K
N
--
M
E
L
V
Q
N
L
Y
S
T
T
L
A
E
K
T
K
T
L
L
L
Y
K
E
K
I
D
T
GINTCQFCNKIIKHNN
I
S
-
E
N
L
--
F
A
F
C
RDTSCTFVSH
L
A
C
A
Y
R
Y
F
M
S
------
E
D
T
I
I
P
Q
S
P
K
C
P
K
C
Y
T
L
L
K
W
C
D
V
I
Y
Y
S
I
K
L
N
K------------------------------------------------------------------------------------------------------------
30
HHSearch
40.23
33%
-198
- C2 -
-
2LO3
-
A:
[16-33]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
Y
R
V
C
----------
E
K
C
G
K
P
L
A
L
T
------
A
I
V
-----------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
39.20
33%
-90
- C2 -
-
5W1S
-
?
M:
[20-71]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
R
I
R
Q
K
I
N
A
------------------
H
G
-
I
P
V
--
Y
-
L
C
----------
E
A
C
G
N
P
I
P
E
A
------
R
R
K
I
F
P
G
V
T
L
C
V
E
C
Q
A
Y
Q
E
R
Q
R
K
H
--------------------------------------------------------------------------------------------------------------------
41
HHSearch
38.22
29%
-130
- C2 -
-
1PJJ
2
FPG_LACLC
A:
[244-271]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
C
----------
S
R
C
G
A
E
I
Q
K
I
------
K
V
-
A
G
R
G
T
H
F
C
P
V
C
Q
Q
K
---------------------------------------------------------------------------------------------------------------------------
28
HHSearch
37.06
27%
-89
- C2 -
-
5W1S
-
?
N:
[15-72]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
M
T
G
I
N
R
I
R
Q
K
------------------
I
N
-
A
H
G
IP
V
Y
L
C
----------
E
A
C
G
N
P
I
P
E
A
------
R
R
K
I
F
P
G
V
T
L
C
V
E
C
Q
A
Y
Q
E
R
Q
R
K
H
Y
-------------------------------------------------------------------------------------------------------------------
27
HHSearch
36.67
27%
-83
- C2 -
-
5W1S
-
?
M:
[15-72]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
M
T
G
I
N
R
I
R
Q
K
------------------
I
N
-
A
H
G
IP
V
Y
L
C
----------
E
A
C
G
N
P
I
P
E
A
------
R
R
K
I
F
P
G
V
T
L
C
V
E
C
Q
A
Y
Q
E
R
Q
R
K
H
Y
-------------------------------------------------------------------------------------------------------------------
14
Fugue
35.68
22%
25
- C2 -
-
2KGO
-
YBII_ECOLI
A:
[21-108]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
S
--
G
W
A
N
D
D
A
V
N
E
Q
I
N
S
T
I
E
D
A
I
A
R
A
R
G
E
------------------
I
P
R
G
E
S
--
L
D
E
C
----------
E
E
C
G
A
P
I
P
Q
A
------
R
R
E
A
I
P
G
V
R
L
C
I
H
C
Q
Q
E
K
D
L
Q
K
P
A
Y
T
G
Y
N
R
R
G
S
K
DSQLR-----------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
35.31
33%
-44
- C2 -
-
2KGO
-
YBII_ECOLI
A:
[49-96]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
------------------
P
R
-
G
E
S
--
L
D
E
C
----------
E
E
C
G
A
P
I
P
Q
A
------
R
R
E
A
I
P
G
V
R
L
C
I
H
C
Q
Q
E
K
D
L
Q
K
P
A
Y
T
G
-----------------------------------------------------------------------------------------------------------------