@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VMH0: (2017-11-08 )
MHCPFCNAADSKVIDSRLAAEGCQIRRRRECVSCGERFTTFESYEVVMPRVIKSNGKNEPFDEAKLRRSLMHALQKRPVTQEQIETVLSDIQLQIRRLGERDVKSRTIGEIVMQSLFALDHVAYVRFASVYQDFQDVEAFRRQIEQMQQREH
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-------------......10--.....---...20.......-.30......----------------..40.....-...-----50......---.------.60------....-.....70..---.----.-------...----------.80-------.....-----...---.90----------------.......--.100.......110......-.---120...-....130------..--------......140.......150---------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------MHC-------------PFCNAAD
S
--
K
V
I
D
S
---
R
L
A
AE
G
C
Q
I
R
R
R
-
R
E
C
V
S
CGER----------------FTTF
E
S
Y
E
V
-
V
M
P
-----
R
V
I
KSNGK---N------EP-------F
D
E
A
-
K
L
R
R
S
L
M
H
A
---
L
----
Q
-------KRP----------V
T
--------
Q
E
Q
I
E
-----
T
V
L
---
S
D
I
----------------
Q
L
Q
I
R
R
L--GERDVKS
R
T
I
G
E
I
V
M
Q
S
L
F
A
-
L
---
D
H
V
A
Y
V
-
R
F
A
S
V
Y
-------
Q
D
--------
F
Q
D
V
E
A
F
R
R
Q
I
E
Q
M
Q
QREH---------------------------------------------------------------------------------------
34
HHSearch
59.97
23%
-126
- C3 -
-
6R1R
-
RIR1_ECOLI
C:
[3-88]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
N
L
-----
L
V
T
K
R
D
G
S
---
T
------
E
R
-------
I
N
L
D
-
K
I
H
R
V
L
D
W
A
---
A
----
E
-------
G
L
H
--------------------
N
V
S
I
S
-----
Q
V
E
---
L
R
S
----------------
H
I
Q
F
Y
------
D
G
I
K
T
S
D
I
H
E
T
I
I
K
A
A
A
D
-
L
ISR
D
A
P
D
Y
Q
-
Y
L
A
A
R
L
-------
A
I
--------
F
H
--------------------------------------------------------------------------------------------------------
22
Fugue
56.56
23%
-1
- C4 -
-
5DA1
-
?
A:
[2-223]
---------------------------------------------------------------------------------------------------------------------------------------------SSSPL
P
K
V
A
H
N
L
GFYFSPDLTQFAKLPAELA
P
H
W
-------------
P
V
V
T
T
Q
N
N
--
E
R
W
P
D
---
R
L
V
A
S
L
R
P
I
H
K
Y
S
R
A
C
I
G
A
G
Y
M
V
GP
S
V
F
L
G
T
P
GVVS
Y
Y
L
T
K
F
V
R
G
E
A
Q
V
L
P
-----
E
T
V
F
S
T
G
R
---
I
------
E
V
DCREYLD
D
R
E
R
-
V
V
A
E
S
L
P
H
A
---
F
----
I
-------
G
D
V
K
GTTVGGCHH
V
T
--------
S
K
Y
L
P
-----
R
F
L
PKE
S
V
A
----------------
V
V
G
V
S
S
P
--
G
K
A
A
K
A
V
C
T
L
T
D
V
Y
L
P
D
L
E
A
Y
L
---
H
P
E
T
Q
S
-
R
C
W
K
V
M
-------
L
D
--------
F
K
E
V
R
L
M
V
W
K
D
K
T
A
Y
F
Q
L
E
---------------------------------------------------------------------------------------
30
HHSearch
53.17
16%
-13
- C3 -
-
5IM3
2
?
A:
[32-143]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-----
R
V
I
K
R
N
G
T
---
V
------
V
P
-------
Y
T
D
D
-
K
I
T
V
A
I
T
K
A
---
F
----
L
-------
A
V
E
----------
G
G
TAAAS
S
R
I
H
D
T
V
R
-----
R
L
T
---
E
Q
V
----------------
T
A
T
F
K
R
R
M
P
S
G
G
T
I
H
I
E
E
I
Q
D
Q
V
E
L
A
L
M
R
-
A
------
G
E
Q
-
K
V
A
R
D
Y
-------
V
I
--------
Y
R
E
A
R
A
A
E
R
K
N
A
G
---------------------------------------------------------------------------------------------
29
Fugue
51.94
16%
-46
- C3 -
-
4IC9
4
GAG_FIVPE
A:
[4-133]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Q
G
-
R
D
W
K
M
A
I
K
R
----------------
C
S
N
V
---------------
A
V
G
V
G
G
K
---
S
------
K
K
-------
F
G
E
G
-
N
F
R
W
A
I
R
M
A
---
N
----
V
S
T
GREPG
D
I
P
----------
E
T
--------
L
D
Q
L
R
-----
L
V
I
---
C
D
L
----------------
Q
E
R
R
E
K
F
--
G
S
S
K
E
I
D
M
A
I
V
T
L
K
V
F
A
V
A
G
-
L
---
L
N
M
T
V
S
-
T
A
A
A
A
E
-------
N
M
--------
Y
S
Q
M
G
L
D
T
R
P
S
M
K
E
A
G
G
K
E
E
G
P
PQ----------------------------------------------------------------------------------
8
PsiBlast_PDB
49.44
39%
-218
- C5 -
-
4YNW
-
?
A:
[144-173]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
S
L
M
D
S
---
L
----
E
-------
Q
R
P
----------
L
S
--------
R
G
Q
V
E
-----
A
A
I
---
A
D
K
----------------
R
---
R
R
L
--
A
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
49.11
11%
-100
* C3 *
-
5IM3
-
?
A:
[144-235]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
H
-
P
S
I
-----
R
I
T
R
A
D
G
S
---
L
------
S
P
-------
L
D
M
G
-
R
L
N
T
I
I
S
E
A
---
C
----
E
-------
G
L
A
--------------------
E
V
D
G
A
-----
L
I
E
---
R
E
T
----------------
L
K
N
L
Y
------
D
G
V
A
E
K
D
V
N
T
A
L
V
M
T
A
R
T
-
L
VE-
R
E
P
N
Y
S
-
Y
V
T
A
R
L
-------
L
M
------------------------------------------------------------------------------------------------------------------
24
Fugue
48.73
19%
-
- C3 -
-
4L0K
-
?
A:
[1-227]
---------------------------------------------------------------------------------------------------------------------------------------------------------MELCHKTVKSRT
A
Y
S
K
H
F
P
H
K
C
QLPLGHSGKCLEF
P
F
L
V
S
L
S
K
T
H
P
R
I
A
A
---
K
I
V
R
D
A
T
M
T
M
P
R
---
Y
V
A
I
L
D
D
----------------
D
I
L
L
E
K
F
N
L
-
D
M
Q
SLP
E
I
T
R
L
K
I
R
E
K
---
A
------
A
D
-------
Y
D
S
C
I
D
V
A
R
K
L
T
W
L
A
Y
Q
L
----
H
-------
G
A
P
----------
I
P
--------
D
S
F
T
K
-----
N
Y
L
---
E
E
F
F
G
P
M
V
A
GSTNCEICKL
P
L
T
I
D
L
F
--
S
E
A
A
V
E
T
A
H
K
T
P
R
L
H
N
A
--------
E
N
V
G
F
A
H
R
F
C
N
V
A
-------
Q
G
--------
N
K
S
L
D
E
F
Y
L
W
M
E
E
V
L
T
R
V
K
M
L-------------------------------------------------------------------------------------
19
PsiBlast_PDB
45.00
25%
-24
- C2 -
-
4D56
-
?
A:
[100-189]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
K
A
G
G
A
---
Y
------
V
P
-------
L
D
P
T
-
Y
P
R
E
R
L
T
Y
M
---
V
----
Q
-------
D
A
Q
ISVL------
V
T
--------
Q
T
Q
W
S
-----
N
L
I
---
S
D
Y
----------------
Q
G
Q
V
I
C
L
--
D
S
Q
W
A
K
I
A
S
Y
S
Q
E
N
L
V
N
T
V
N
-
P
---
E
N
L
A
Y
V
-
I
Y
T
S
-----------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
43.98
25%
-16
- C2 -
-
4D57
-
?
A:
[100-189]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
K
A
G
G
A
---
Y
------
V
P
-------
L
D
P
T
-
Y
P
R
E
R
L
T
Y
M
---
V
----
Q
-------
D
A
Q
IS
V
L
------
V
T
--------
Q
T
Q
W
S
-----
N
L
I
---
S
D
Y
----------------
Q
G
Q
V
I
C
L
--
D
S
Q
W
A
K
I
A
S
Y
S
Q
E
N
L
V
N
T
V
N
-
P
---
E
N
L
A
Y
V
-
I
Y
T
S
-----------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
43.04
25%
-17
- C2 -
-
4D4I
1
?
A:
[100-189]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
K
A
G
G
A
---
Y
------
V
P
-------
L
D
P
T
-
Y
P
R
E
R
L
T
Y
M
---
V
----
Q
-------
D
A
Q
IS
V
L
------
V
T
--------
Q
T
Q
W
S
-----
N
L
I
---
S
D
Y
----------------
Q
G
Q
V
I
C
L
--
D
S
Q
W
A
K
I
A
S
Y
S
Q
E
N
L
V
N
T
V
N
-
P
---
E
N
L
A
Y
V
-
I
Y
T
S
-----------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
42.96
25%
-11
- C2 -
-
4D4G
1
?
A:
[100-189]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
K
A
G
G
A
---
Y
------
V
P
-------
L
D
P
T
-
Y
P
R
E
R
L
T
Y
M
---
V
----
Q
-------
D
A
Q
IS
V
L
------
V
T
--------
Q
T
Q
W
S
-----
N
L
I
---
S
D
Y
----------------
Q
G
Q
V
I
C
L
--
D
S
Q
W
A
K
I
A
S
Y
S
Q
E
N
L
V
N
T
V
N
-
P
---
E
N
L
A
Y
V
-
I
Y
T
S
-----------------------------------------------------------------------------------------------------------------------------
28
Fugue
42.81
13%
-69
- C3 -
-
3H87
2
VAPC2_MYCTU
A:
[17-152]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
Q
R
--
W
L
I
D
K
---
S
A
L
V
R
L
T
D
S
P
D
M
-
E
I
W
S
N
R
I
E
R
----------------
G
L
V
H
I
T
--
G
-
V
T
R
-----
L
E
V
G
F
S
A
E
---
C
------
G
E
-------
I
A
R
R
-
E
F
R
E
P
P
L
S
A
---
M
----
P
-------
V
E
Y
----------
L
T
---------
P
R
I
E
-----
D
R
A
---
L
E
V
----------------
Q
T
L
L
A
D
R
--
G
----
H
H
R
G
P
S
I
P
D
L
L
-
I
A
A
-
T
---
A
E
L
S
G
L
-
T
V
L
H
V
D
-------
K
D
--------
F
D
A
I
A
A
L
T
G
Q
K
T
E
R
L
T
H
R
----------------------------------------------------------------------------------------
6
PsiBlast_PDB
40.96
38%
-145
- C4 -
-
2NB9
-
?
A:
[3-39]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
C
-------------
P
E
C
-
A
S
R
Y
--
F
V
D
D
S
---
K
V
G
P
D
G
R
V
V
R
-----
C
A
S
C
G
N
R
----------------
W
T
A
F
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
40.77
25%
-11
* C2 *
-
4D4H
-
?
A:
[100-182]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
K
A
G
G
A
---
Y
------
V
P
-------
L
D
P
T
-
Y
P
R
E
R
L
T
Y
M
---
V
----
Q
-------
D
A
Q
IS
V
L
------
V
T
--------
Q
T
Q
W
S
-----
N
L
I
---
S
D
Y
----------------
Q
G
Q
V
I
C
L
--
D
S
Q
W
A
K
I
A
S
Y
S
Q
E
N
L
V
N
T
V
N
-
P
---
E
N
L
A
Y
V
-
I
Y
T
S
-----------------------------------------------------------------------------------------------------------------------------
23
Fugue
38.73
18%
-50
- C2 -
-
2K4N
-
?
A:
[1-111]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
S
--
E
V
I
K
E
---
F
L
E
D
I
G
-------------------------------------------------------
E
D
Y
---
I
------
E
L
-------
E
N
E
I
-
H
L
K
P
E
V
F
Y
E
---
V
----
W
-------
K
Y
V
----------
G
E
--------
P
E
L
K
T
-----
Y
V
I
---
E
D
E
----------------
I
V
E
P
G
E
Y
--
D
P
P
E
M
K
Y
T
N
V
K
K
V
K
I
K
K
V
Y
--
F
---
E
T
L
D
N
V
-
R
V
V
T
D
Y
-------
S
E
--------
F
Q
K
I
L
K
K
R
G
T
K
L
E
H
H
H
H
H
H
---------------------------------------------------------------------------------------
31
HHSearch
38.63
14%
-146
- C3 -
-
1ZYZ
-
RIR1_YEAST
A:
[15-85]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
-
K
I
T
A
R
I
S
R
L
---
C
----
Y
-------
G
L
D
----------
P
K
--------
H
I
D
A
V
-----
K
V
T
---
Q
R
I
----------------
I
S
------------
T
T
I
E
L
D
N
L
A
A
E
T
C
A
Y
-
M
TT-
V
H
P
D
Y
A
-
T
L
A
A
R
I
-------
A
I
--------
S
N
--------------------------------------------------------------------------------------------------------
27
Fugue
38.44
17%
37
- C3 -
-
3WFS
-
?
C:
[23-414]
LNFYLSYFDDVAKVLPREHYCFIVGGWVRDRILGEPVGYNIDVDFLTTADPVELAKNFAKRIGGHFFVFEPTIASVVLHLPPYRYRFDFSPLKGKDLEKALIEDLKERDFTANAIAVNLDDVLTIVYDPTGGIKDLEQGLLRPVSIENLKRDPVRVLRGFRIAIEKNLQLTE
D
F
Y
-------------
E
F
V
K
E
D
P
R
--
I
V
L
K
S
AVE
R
I
T
H
E
L
F
K
I
M
K
E
-
K
T
A
H
K
V
I
R
E
----------------
L
Y
E
Y
G
V
L
E
A
-
I
I
P
-----
E
I
G
R
L
R
E
V
---
K
------
D
P
-------------
L
D
E
H
T
L
K
T
---
L
----
E
-------
Y
L
E
----------
Q
V
--------
I
E
D
R
A
-----
K
Y
L
---
S
A
E
----------------
L
L
E
--
N
F
--
G
----
K
K
R
V
L
G
E
F
T
------------
D
V
E
L
L
-
K
W
G
A
L
F
-------
H
D
IGKPQTTF
Y
E
H
D
K
V
G
A
Q
I
V
R
E
I
G
E
R
L
R
WGDEATEFVAKLVRHHLRPFFLREAFKKGELKRRGMANFWRECGDIAPHLFLLSIADAMASGDEEEDIKALMETIAELESFNRNEMK
1
PsiBlast_PDB
37.15
29%
-16
- C5 -
-
2C1D
1
SOXA_PARPN
A:
[66-146]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
K
---
W
N
A
A
M
G
V
N
---
G
-
E
S
C
A
S
C
H
Q
G
----------------
P
E
S
M
A
G
L
R
A
-
V
M
P
-----
R
V
D
E
H
T
G
K
L
M
I
M
------
E
D
-------
Y
V
N
A
-
C
V
T
E
R
M
--
G
---
L
----
E
-------
K
W
G
----------
V
T
--------
S
D
N
M
K
-----
D
M
L
---
S
L
I
----------------
S
L
Q
S
R
G
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
35.66
14%
20
- C3 -
-
5FT3
-
?
B:
[1-221]
----------------------------------------------------------------------------------------------------------------------------------------------------MTKLILYTLHVS
P
P
C
R
A
V
E
L
C
A
K
A
L
G
L
-------------
E
L
E
Q
K
T
V
N
--
L
L
T
K
E
---
H
L
T
P
E
F
M
K
M
N
P
Q
-
H
T
V
P
V
L
D
D
N
----------------
G
T
I
V
C
E
S
H
A
-
I
M
I
-----
Y
L
V
S
K
Y
G
K
---
D
DSLYSK
E
L
-------
V
K
Q
A
-
K
L
N
A
A
L
H
F
E
---
S
G
V
L
F
A
-------
R
L
R
----------
F
V
--------
C
E
P
I
L
FAGGS
E
I
P
---
A
D
R
----------------
A
E
Y
V
Q
K
A
--
Y
Q
L
L
E
D
T
L
V
D
D
Y
I
V
G
N
S
L
T
I
-
A
---
D
F
S
C
V
S
-
S
V
S
S
I
M
G
V
IPMDK
E
K
--------
F
P
K
I
Y
G
W
L
D
R
L
K
A
L
P
Y
Y
E
A
AN
G
S
G
A
E
Q
V
A
Q
F
V
L
S
Q
K
E
K
N
A
Q
K----------------------------------------------------------------
4
PsiBlast_PDB
33.76
33%
-44
- C5 -
-
4F6M
2
A:
[77-114]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
-
Y
Q
C
L
A
C
G
K
S
----------------
F
I
N
Y
Q
-----
F
M
S
-----
S
H
I
K
S
V
H
S
---
Q
------
D
P
-------
S
G
D
S
-
K
L
Y
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------