@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VMV1: (2017-11-10 )
MNKLNKLMLGLGLTVASVAANAAGYGVIDLAKVVESSTYLKQQNASLNQSVKPTTTKLEQLGKELERLQRQAQTQGQKMKEDEIKKLQSQYQSKLNEFNSTQQGLQSRVQTSLQSMNTTFETRVKQAAEQLRKENNLDFILNKNSTVAYDAKYDLTDKMIQKVNSMK
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40........50........60........70........80........90........100......-------.110..--......120-.-.......130.......140....-...---150..-......160.....---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
N
K
L
N
K
L
M
L
GL
G
L
T
V
A
S
V
A
ANAAG
Y
G
V
I
D
L
A
K
V
V
E
S
S
T
Y
L
KQQNASLNQSVK
P
T
T
T
K
L
E
Q
L
G
K
E
L
E
R
L
Q
R
Q
A
Q
TQGQKM
K
E
D
E
I
K
K
L
Q
S
Q
Y
Q
S
K
L
N
EFN
S
T
Q
Q
G
L
Q
S
R
-------
V
Q
-
T
S
L
--
Q
S
M
N
T
T
F
E
--
T
-
R
V
K
Q
A
A
E
Q
L
R
KENNL
D
F
I
LNKN
S
T
-
V
A
Y---DA-KY-D
L
T
D
K
M
I
Q
K
V
NSMK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
81.05
15%
-115
- C4 -
-
4KQT
4
?
A:
[22-169]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
P
A
L
P
G
V
C
I
F
S
S
P
R
A
V
G
S
S
L
V
G
K
A
V
D
A
R
L
K
T
I
I
Q
Q
V
N
A
E
L
T
G
E
R
T
A
L
D
N
E
A
K
A
L
D
A
K
K
T
T
I
A
Q
D
A
L
E
Q
Q
A
A
T
L
Q
A
K
A
N
A
W
Q
R
K
G
Q
L
R
Q
K
E
-------
V
E
-
A
T
E
--
Q
K
A
L
S
R
V
Y
--
Q
-
E
L
N
T
P
I
Q
Q
V
Y
Q
A
Q
K
C
S
V
L
L
D
R
E
A
V
-
M
L
A
---
N
P
-
A
M
-
D
I
T
D
A
V
V
A
A
L
D
A
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
80.30
14%
-60
- C4 -
-
4KQT
4
?
A:
[15-183]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Y
F
Q
G
T
H
G
P
A
L
P
G
V
C
I
F
S
S
P
R
A
V
G
S
S
L
V
G
K
A
V
D
A
R
L
K
T
I
I
Q
Q
V
N
A
E
L
T
G
E
R
T
A
L
D
N
E
A
K
A
L
D
A
K
K
T
T
I
A
Q
D
A
L
E
Q
Q
A
A
T
L
Q
A
K
A
N
A
W
Q
R
K
G
Q
L
R
Q
K
E
-------
V
E
-
A
T
E
--
Q
K
A
L
S
R
V
Y
--
Q
-
E
L
N
T
P
I
Q
Q
V
Y
Q
A
Q
K
C
S
V
L
L
D
R
E
A
V
M
L
-----
A
N
-
P
A
M
D
I
T
D
A
V
V
A
A
L
D
A
R
I
K
T
L
T
F
D
R
ERLDQQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
72.74
13%
-76
- C4 -
-
1SG2
-
SKP_ECOLI
C:
[12-153]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
D
K
I
A
I
V
N
M
G
S
L
F
Q
Q
V
A
Q
K
T
G
V
S
N
T
L
E
N
E
F
K
G
R
A
S
E
L
Q
R
M
E
T
D
L
Q
A
K
M
K
K
L
Q
S
M
---
K
A
G
S
D
R
T
K
L
E
K
D
V
M
A
Q
R
Q
T
F
A
Q
K
A
Q
A
F
E
Q
D
-------
R
A
-
R
R
S
--
N
E
E
R
G
K
L
V
--
T
-
R
I
Q
T
A
V
K
S
V
A
N
S
Q
D
I
D
L
V
V
D
A
N
A
V
-
A
Y
N
---
S
S
D
V
K
-
D
I
T
A
D
V
L
K
Q
V
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
70.41
13%
-66
- C4 -
-
1U2M
-
SKP_ECOLI
C:
[20-161]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
D
K
I
A
I
V
N
M
G
S
L
F
Q
Q
V
A
Q
K
T
G
V
S
N
T
L
E
N
E
F
K
G
R
A
S
E
L
Q
R
M
E
T
D
L
Q
A
K
M
K
K
L
Q
S
M
---
K
A
G
S
D
R
T
K
L
E
K
D
V
M
A
Q
R
Q
T
F
A
Q
K
A
Q
A
F
E
Q
D
-------
R
A
-
R
R
S
--
N
E
E
R
G
K
L
V
--
T
-
R
I
Q
T
A
V
K
S
V
A
N
S
Q
D
I
D
L
V
V
D
A
N
A
V
-
A
Y
N
---
S
S
D
V
K
-
D
I
T
A
D
V
L
K
Q
V
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
67.61
13%
-53
- C4 -
-
1SG2
-
SKP_ECOLI
A:
[13-153]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
K
I
A
I
V
N
M
G
S
L
F
Q
Q
V
A
Q
K
T
G
V
S
N
T
L
E
N
E
F
K
G
R
A
S
E
L
Q
R
M
E
T
D
L
Q
A
K
M
K
K
L
Q
S
M
---
K
A
G
S
D
R
T
K
L
E
K
D
V
M
A
Q
R
Q
T
F
A
Q
K
A
Q
A
F
E
Q
D
-------
R
A
-
R
R
S
--
N
E
E
R
G
K
L
V
--
T
-
R
I
Q
T
A
V
K
S
V
A
N
S
Q
D
I
D
L
V
V
D
A
N
A
V
-
A
Y
N
---
S
S
D
V
K
-
D
I
T
A
D
V
L
K
Q
V
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
60.65
13%
-91
- C4 -
-
1U2M
-
SKP_ECOLI
B:
[23-161]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
A
I
V
N
M
G
S
L
F
Q
Q
V
A
Q
K
T
G
V
S
N
T
L
E
N
E
F
K
G
R
A
S
E
L
Q
R
M
E
T
D
L
Q
A
K
--------------------------
R
Q
T
F
A
Q
K
A
Q
A
F
E
Q
D
-------
R
A
-
R
R
S
--
N
E
E
R
G
K
L
V
--
T
-
R
I
Q
T
A
V
K
S
V
A
N
S
Q
D
I
D
L
V
V
D
A
N
A
V
-
A
Y
N
---
S
S
D
V
K
-
D
I
T
A
D
V
L
K
Q
V
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
59.36
24%
33
- C4 -
-
9ICH
3
DPOLB_HUMAN
A:
[103-233]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
G
I
G
P
S
A
A
R
K
F
V
D
E
G
I
K
T
L
E
D
---
L
R
K
N
E
D
K
L
N
H
H
Q
R
---
I
G
L
K
Y
F
G
D
F
E
K
R
I
P
R
E
E
M
L
Q
M
Q
D
I
V
L
N
E
V
K
K
V
D
S
E
Y
I
A
T
V
--
C
G
S
F
R
R
G
A
E
S
S
G
D
M
D
V
L
L
T
H
-
P
S
F
--
T
S
E
S
T
K
Q
P
--
K
-
L
L
H
Q
V
V
E
Q
L
Q
K
V
H
F
I
T
D
T
L
S
K
G
E
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
59.13
24%
27
- C4 -
-
9ICI
2
DPOLB_HUMAN
A:
[103-233]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
G
I
G
P
S
A
A
R
K
F
V
D
E
G
I
K
T
L
E
D
---
L
R
K
N
E
D
K
L
N
H
H
Q
R
---
I
G
L
K
Y
F
G
D
F
E
K
R
I
P
R
E
E
M
L
Q
M
Q
D
I
V
L
N
E
V
K
K
V
D
S
E
Y
I
A
T
V
--
C
G
S
F
R
R
G
A
E
S
S
G
D
M
D
V
L
L
T
H
-
P
S
F
--
T
S
E
S
T
K
Q
P
--
K
-
L
L
H
Q
V
V
E
Q
L
Q
K
V
H
F
I
T
D
T
L
S
K
G
E
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
58.14
23%
-49
- C4 -
-
4YKN
-
P85A_HUMAN (first)
A:
[156-341]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Y
E
E
Y
T
R
T
S
Q
E
I
Q
M
K
R
T
A
I
E
A
F
N
E
T
I
K
I
F
E
E
Q
C
Q
T
Q
E
R
Y
S
K
E
Y
I
E
K
F
K
R
E
G
N
E
K
E
I
Q
R
I
M
H
N
Y
D
K
L
K
S
R
-------
I
S
-
E
I
I
--
D
S
R
R
R
L
E
E
--
D
-
L
K
K
Q
A
A
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
57.97
24%
28
- C4 -
-
9ICG
3
DPOLB_HUMAN
A:
[103-233]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
G
I
G
P
S
A
A
R
K
F
V
D
E
G
I
K
T
L
E
D
---
L
R
K
N
E
D
K
L
N
H
H
Q
R
---
I
G
L
K
Y
F
G
D
F
E
K
R
I
P
R
E
E
M
L
Q
M
Q
D
I
V
L
N
E
V
K
K
V
D
S
E
Y
I
A
T
V
--
C
G
S
F
R
R
G
A
E
S
S
G
D
M
D
V
L
L
T
H
-
P
S
F
--
T
S
E
S
T
K
Q
P
--
K
-
L
L
H
Q
V
V
E
Q
L
Q
K
V
H
F
I
T
D
T
L
S
K
G
E
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
57.61
24%
17
- C4 -
-
5U8H
2
DPOLB_HUMAN
A:
[103-238]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
G
I
G
P
S
A
A
R
K
F
V
D
E
G
I
K
T
L
E
D
---
L
R
K
N
E
D
K
L
N
H
H
Q
R
---
I
G
L
K
Y
F
G
D
F
E
K
R
I
P
R
E
E
M
L
Q
M
Q
D
I
V
L
N
E
V
K
K
V
D
S
E
Y
I
A
T
V
--
C
G
S
F
R
R
G
A
E
S
S
G
D
M
D
V
L
L
T
H
-
P
S
F
--
T
S
--------
K
-
L
L
H
Q
V
V
E
Q
L
Q
K
V
H
F
I
T
D
T
L
S
K
D
E
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
56.82
24%
28
- C4 -
-
9ICJ
2
DPOLB_HUMAN
A:
[103-233]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
G
I
G
P
S
A
A
R
K
F
V
D
E
G
I
K
T
L
E
D
---
L
R
K
N
E
D
K
L
N
H
H
Q
R
---
I
G
L
K
Y
F
G
D
F
E
K
R
I
P
R
E
E
M
L
Q
M
Q
D
I
V
L
N
E
V
K
K
V
D
S
E
Y
I
A
T
V
--
C
G
S
F
R
R
G
A
E
S
S
G
D
M
D
V
L
L
T
H
-
P
S
F
--
T
S
E
S
T
K
Q
P
--
K
-
L
L
H
Q
V
V
E
Q
L
Q
K
V
H
F
I
T
D
T
L
S
K
G
E
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
Fugue
56.61
16%
48
- C5 -
-
5F9H
2
DDX58_HUMAN
A:
[11-692]
FKPR
N
Y
Q
L
E
L
A
L
PAMKGKN
T
I
I
C
A
P
TGCG
K
T
F
V
S
L
L
I
C
E
H
H
L
K
K
FPQG
Q
K
G
K
V
V
F
F
A
NQ
I
P
V
Y
E
Q
Q
K
S
V
F
S
K
Y
FERHG
Y
R
V
T
G
I
S
GATAENVP
V
E
Q
I
V
E
N
N
D
I
I
I
L
T
P
Q
I
L
V
N
N
L
K
K
GTIPSLSIFT
L
M
I
F
D
ECHNTSKQH
P
Y
N
M
I
M
F
N
Y
L
D
Q
K
L
GGSSGPL
P
Q
V
I
G
L
T
ASVGVGDAKN
T
D
E
A
L
D
Y
I
C
K
L
C
A
S
L
D
A
S
V
I
A
T
V
K
H
----
N
L
E
E
L
E
Q
V
V
Y
K
P
Q
K
F
F
R
K
V
E
S
R
I
S
D
--
K
F
K
Y
I
I
A
Q
L
M
R
D
T
E
S
L
A
K
R
I
C
K
D
L
R
E
F
G
T
Q
K
Y
E
Q
W
I
V
T
V
Q
K
A
C
M
V
F
Q
M
P
D
K
D
E
E
S
R
-------
I
C
-
K
A
L
--
F
L
Y
T
S
H
L
R
K
Y
N
-
D
A
L
I
I
S
E
H
A
R
M
K
D
A
L
D
Y
L
K
D
F
F
S
N
-
V
R
A
AFD
E
I
-
E
Q
-
D
L
T
Q
R
F
E
E
K
L
Q
E
L
E
S
V
S
R
DPSNEN
P
K
L
E
D
L
C
F
I
L
Q
E
E
Y
H
L
NPE
T
I
T
I
L
F
V
KT
R
A
L
V
D
A
L
K
N
W
I
E
G
NPKLSF
L
K
P
G
I
L
T
G
RDHN
I
L
I
A
TSVADEGIDIAQCN
L
V
I
L
Y
E
Y
V
G
N
V
I
K
M
I
Q
T
R
G
RGRARG
S
K
C
F
L
L
T
SN
A
G
V
I
E
K
E
Q
I
N
M
Y
K
E
K
M
M
N
D
S
I
L
R
L
Q
T
WD
E
A
V
F
R
E
K
I
L
H
I
Q
T
H
E
K
F
I
R
D
S
QPKPVPDKE
N
K
K
L
L
C
RKCKALACYTAD
V
R
V
I
EE
C
H
Y
T
V
L
G
D
A
F
K
E
C
F
VSRPHP
K
P
K
Q
F
SS
F
E
K
R
A
K
I
F
C
ARQNCSHDW
G
I
H
V
K
Y
KT
F
E
I
P
V
I
K
IES
F
V
V
E
D
IATG
V
Q
T
L
Y
SKWKDFH
F
E
K
I
P
FDPAE
26
HHSearch
52.20
14%
-51
- C4 -
-
4KQT
4
?
A:
[47-137]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
R
L
K
T
I
I
Q
Q
V
N
A
E
L
T
G
E
R
T
A
L
D
N
E
A
K
A
L
D
A
K
K
T
T
I
A
Q
D
A
L
E
Q
Q
A
A
T
L
Q
A
K
A
N
A
W
Q
R
K
G
Q
L
R
Q
K
E
---
V
E
A
T
-------
E
Q
-
K
A
L
--
S
R
V
Y
Q
E
L
N
--
T
-
P
I
Q
Q
V
Y
Q
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
51.79
26%
-98
- C4 -
-
4IUL
-
IF4G2_HUMAN
A:
[187-250]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
Q
L
K
D
M
G
E
D
L
E
C
L
C
Q
I
M
R
T
V
G
P
R
L
D
H
E
R
A
K
S
L
M
D
Q
Y
F
A
R
M
C
S
L
M
L
S
K
E
-
L
P
A
R
-------
I
R
-
F
L
L
--
Q
D
---
T
V
E
--
L
-
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
50.41
25%
0
- C- -
-
5DUL
1
DXR_YERPE
A:
[111-207]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
T
L
A
A
I
R
A
G
K
Q
V
L
L
A
N
K
E
S
L
I
T
C
G
K
L
F
M
D
E
V
K
R
S
R
A
Q
L
L
P
I
D
S
E
H
N
A
I
F
Q
S
L
P
E
R
-------
I
Q
-
R
Q
L
GY
S
S
L
N
E
N
G
V
--
S
-
R
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
48.72
23%
71
- C4 -
-
1NXH
-
?
A:
[5-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
M
R
L
M
K
R
R
I
L
E
S
Y
R
W
Q
E
D
V
V
K
P
L
S
R
E
L
E
I
D
V
E
E
F
---
Q
D
I
L
M
D
K
-------
L
D
M
S
S
L
--
E
A
L
H
P
R
F
E
--
S
A
R
P
R
C
I
R
E
K
L
H
S
D
L
Q
L
C
W
L
V
D
V
M
E
I
-
I
S
V
---
D
D
-
A
E
-
A
L
K
D
E
I
T
E
L
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
46.75
16%
16
- C4 -
-
1SG2
-
SKP_ECOLI
C:
[38-122]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
N
E
F
K
G
R
A
S
E
L
Q
R
M
E
T
D
L
Q
A
K
M
K
K
L
Q
S
M
K
A
---
G
S
D
R
T
K
L
E
K
D
V
M
A
Q
R
Q
T
F
A
Q
K
A
Q
A
F
E
Q
D
R
A
---
R
R
-------
S
N
-
E
E
R
--
G
K
L
V
T
R
I
Q
--
T
-
A
V
K
S
V
A
N
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
46.73
16%
30
- C4 -
-
1U2M
-
SKP_ECOLI
C:
[49-130]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
F
K
G
R
A
S
E
L
Q
R
M
E
T
D
L
Q
A
K
M
K
K
L
Q
S
M
K
A
---
G
S
D
R
T
K
L
E
K
D
V
M
A
Q
R
Q
T
F
A
Q
K
A
Q
A
F
E
Q
D
R
---
A
R
R
-------
S
N
-
E
E
R
--
G
K
L
V
T
R
I
Q
--
T
-
A
V
K
S
V
A
N
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
45.89
16%
13
- C4 -
-
1SG2
-
SKP_ECOLI
A:
[38-122]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
N
E
F
K
G
R
A
S
E
L
Q
R
M
E
T
D
L
Q
A
K
M
K
K
L
Q
S
M
K
A
---
G
S
D
R
T
K
L
E
K
D
V
M
A
Q
R
Q
T
F
A
Q
K
A
Q
A
F
E
Q
D
R
A
---
R
R
-------
S
N
-
E
E
R
--
G
K
L
V
T
R
I
Q
--
T
-
A
V
K
S
V
A
N
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------