@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VMX2: (2017-11-11 )
MSIHPDPQINRLNVLGEPLASCCFDPITGYFRNGFCHTAVTDLGQHTVCAQMTSEFLNFSQKVGNDLITPLPEAGFPGLQPGDFWCICVTRWVEAYQAGQAPPVKLHACHQAVLSYVPLDVLMEFAV
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10....-....20........30........40........50......-----..60......-.--------.70--........80.....--....90........100.......110.......120.....-------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSIHPDPQIN
R
L
N
V
L
-
G
E
P
L
A
S
C
C
F
D
P
I
T
G
Y
F
RNG
F
C
H
T
A
V
T
D
LGQ
H
T
V
C
A
Q
M
T
S
E
F
L
-----
N
F
S
Q
K
VGNDL-I--------TPL--PEAGFPGLQ-PG
D
F
W
--
C
I
C
V
T
R
W
V
E
A
Y
QAGQAPP
V
K
L
H
A
C
H
Q
A
V
L
S
YV
P
L
D
V
L
M
E
FAV-------------------------------------------------------------------------
3
PsiBlast_PDB
82.46
53%
-165
- C5 -
-
3USH
-
?
A:
[4-118]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
L
-
G
G
V
L
R
A
C
S
M
D
P
E
T
G
F
Y
R
D
G
H
C
R
T
G
P
R
D
T
G
S
H
V
V
C
A
E
M
T
E
A
F
L
-----
E
Y
T
K
R
Q
G
N
D
L
-
M
--------
T
P
R
--
P
E
M
D
F
P
G
L
E
-
P
G
D
R
W
--
C
L
C
A
A
R
W
R
E
A
M
E
A
G
V
A
P
P
V
V
L
A
A
T
S
E
A
A
L
K
A
V
D
L
E
V
L
K
A
H
A
V
-------------------------------------------------------------------------
33
HHSearch
82.19
53%
-166
* C5 *
-
3USH
-
?
B:
[2-118]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Q
N
V
L
-
G
G
V
L
R
A
C
S
M
D
P
E
T
G
F
Y
R
D
G
H
C
R
T
G
P
R
D
T
G
S
H
V
V
C
A
E
M
T
E
A
F
L
-----
E
Y
T
K
R
Q
G
N
D
L
-
M
--------
T
P
R
--
P
E
M
D
F
P
G
L
E
-
P
G
D
R
W
--
C
L
C
A
A
R
W
R
E
A
M
E
A
G
V
A
P
P
V
V
L
A
A
T
S
E
A
A
L
K
A
V
D
L
E
V
L
K
A
H
A
V
-------------------------------------------------------------------------
2
PsiBlast_PDB
73.40
56%
-154
- C5 -
-
2LQ3
-
?
A:
[6-120]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
L
-
G
Q
D
L
E
V
C
C
C
A
P
M
T
G
W
Y
R
N
G
F
C
Q
T
D
V
Q
D
R
G
S
H
T
V
C
A
E
M
T
E
E
F
L
-----
L
F
S
R
D
R
G
N
D
L
-
M
--------
T
P
R
--
P
E
F
N
F
P
G
L
K
-
A
G
D
R
W
--
C
L
C
A
S
R
W
Q
E
A
F
E
A
G
M
A
P
P
V
V
L
Q
S
T
E
K
S
A
L
R
Y
V
S
L
A
D
L
Q
A
H
A
L
-------------------------------------------------------------------------
31
HHSearch
73.02
54%
-151
- C5 -
-
2LQ3
-
?
A:
[1-120]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
Q
G
Q
N
V
L
-
G
Q
D
L
E
V
C
C
C
A
P
M
T
G
W
Y
R
N
G
F
C
Q
T
D
V
Q
D
R
G
S
H
T
V
C
A
E
M
T
E
E
F
L
-----
L
F
S
R
D
R
G
N
D
L
-
M
--------
T
P
R
--
P
E
F
N
F
P
G
L
K
-
A
G
D
R
W
--
C
L
C
A
S
R
W
Q
E
A
F
E
A
G
M
A
P
P
V
V
L
Q
S
T
E
K
S
A
L
R
Y
V
S
L
A
D
L
Q
A
H
A
L
-------------------------------------------------------------------------
32
HHSearch
70.97
54%
-
- C5 -
-
4IOH
-
?
A:
[2-120]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
T
M
N
V
L
-
G
T
P
L
E
C
C
C
Q
N
P
L
T
G
F
Y
R
D
G
F
C
R
T
G
A
G
D
V
G
A
H
V
V
C
A
Q
M
T
A
E
F
L
-----
T
F
T
R
S
R
G
N
D
L
-
S
--------
T
P
V
--
P
A
Y
Q
F
P
G
L
K
-
P
G
D
R
W
--
C
L
C
A
S
R
W
R
E
A
L
E
A
G
V
A
P
P
V
I
L
E
A
T
H
A
S
A
L
E
Y
V
S
L
E
D
L
K
A
H
A
L
-------------------------------------------------------------------------
1
PsiBlast_PDB
67.66
55%
-
- C5 -
-
4IOH
-
?
A:
[6-120]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
L
-
G
T
P
L
E
C
C
C
Q
N
P
L
T
G
F
Y
R
D
G
F
C
R
T
G
A
G
D
V
G
A
H
V
V
C
A
Q
M
T
A
E
F
L
-----
T
F
T
R
S
R
G
N
D
L
-
S
--------
T
P
V
--
P
A
Y
Q
F
P
G
L
K
-
P
G
D
R
W
--
C
L
C
A
S
R
W
R
E
A
L
E
A
G
V
A
P
P
V
I
L
E
A
T
H
A
S
A
L
E
Y
V
S
L
E
D
L
K
A
H
A
L
-------------------------------------------------------------------------
25
Fugue
42.09
14%
0
- C- -
-
1KX5
-
H32_XENLA
A:
[1-135]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARTK
Q
T
A
R
K
S
T
G
G
K
A
P
R
K
Q
-
L
A
T
K
A
A
R
K
S
A
P
A
T
G
G
V
K
K
P
H
R
Y
R
P
G
T
V
A
L
R
E
I
R
R
Y
Q
K
S
T
E
L
L
------
I
R
K
L
P
F
Q
R
L
-
V
--------
R
E
I
--
A
Q
D
F
K
T
D
L
R
-
F
Q
S
S
A
--
V
M
A
L
Q
E
A
S
E
A
Y
L
V
A
L
F
E
D
T
N
L
C
A
I
H
A
K
R
V
T
I
M
P
K
D
I
Q
L
A
R
R
I
R
GERA--------------------------------------------------------------------
29
Fugue
41.10
21%
-30
* C7 *
-
5B6D
2
?
A:
[1-325]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TFGT
F
Q
D
A
Y
L
S
Q
L
R
D
I
Y
H
SPE
F
R
N
A
P
RG
Q
A
S
R
E
R
I
G
A
G
F
R
L
LDPVQRHISVPARRAN
V
V
F
N
F
A
E
A
L
W
Y
L
S
GSDR
L
D
F
I
Q
Y
Y
A
PGIAAYSADGRTLRGTAYGPRIFRHPAGGVN
Q
W
E
N
V
V
K
T
L
T
D
DPDSKRA
V
I
Q
I
F
DPRE
L
A
V
A
D
N
I
D
V
A
C
T
L
A
L
-
Q
F
L
I
R
D
G
L
L
C
G
I
G
Y
M
R
A
N
D
A
F
R
G
A
V
S
D
V
F
S
F
T
F
L
Q
E
F
T
A
R
Y
L
GLGI
G
T
Y
H
H
V
V
G
S
V
H
-
I
Y
DSD
A
R
W
A
E
R
V
--
L
D
A
G
F
P
A
M
P
-
D
G
D
N
W
P
H
V
R
R
V
L
E
W
E
E
R
L
R
T
N
A
A
R
L
------
S
A
D
A
L
D
A
L
D
L
P
A
Y
W
K
H
V
V
A
L
F
E
A
H
R
Q
V
R
H
EDTPD
R
A
L
L
A
A
LP
E
V
Y
R
Q
S
L
A
V
K
W
P
GHFG---------------------------------
40
HHSearch
40.09
36%
-278
- C1 -
-
4UQT
-
CWC26_YEAST
B:
[222-232]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
R
F
-
A
I
M
-
P
G
S
R
W
---------------------------------------------------------------------------------------------------------------------
34
HHSearch
37.06
43%
-278
- C7 -
-
2MY2
-
B:
[306-319]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
P
E
N
R
F
-
A
I
M
-
P
G
S
R
W
---------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
35.42
29%
-152
- C9 -
-
1CX8
-
TFR1_HUMAN
A:
[312-364]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
D
M
V
L
K
D
G
-
F
--------
Q
P
S
--
R
S
I
I
F
A
S
W
S
-
A
G
D
F
G
--
S
V
G
A
T
E
W
L
E
G
Y
---------
L
S
S
L
H
L
K
A
F
T
Y
I
N
L
D
--------------------------------------------------------------------------------
17
PsiBlast_PDB
34.96
29%
-152
- C9 -
-
2NSU
-
TFR1_HUMAN
A:
[433-485]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
D
M
V
L
K
D
G
-
F
--------
Q
P
S
--
R
S
I
I
F
A
S
W
S
-
A
G
D
F
G
--
S
V
G
A
T
E
W
L
E
G
Y
---------
L
S
S
L
H
L
K
A
F
T
Y
I
N
L
D
--------------------------------------------------------------------------------
18
PsiBlast_PDB
34.56
29%
-125
* C9 *
-
1DE4
-
TFR1_HUMAN
C:
[313-365]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
D
M
V
L
K
D
G
-
F
--------
Q
P
S
--
R
S
I
I
F
A
S
W
S
-
A
G
D
F
G
--
S
V
G
A
T
E
W
L
E
G
Y
---------
L
S
S
L
H
L
K
A
F
T
Y
I
N
L
D
--------------------------------------------------------------------------------
16
PsiBlast_PDB
34.29
29%
-152
- C9 -
-
1SUV
-
TFR1_HUMAN
A:
[312-364]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
D
M
V
L
K
D
G
-
F
--------
Q
P
S
--
R
S
I
I
F
A
S
W
S
-
A
G
D
F
G
--
S
V
G
A
T
E
W
L
E
G
Y
---------
L
S
S
L
H
L
K
A
F
T
Y
I
N
L
D
--------------------------------------------------------------------------------
19
PsiBlast_PDB
33.78
29%
-119
- C9 -
-
3KAS
-
TFR1_HUMAN
A:
[313-365]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
D
M
V
L
K
D
G
-
F
--------
Q
P
S
--
R
S
I
I
F
A
S
W
S
-
A
G
D
F
G
--
S
V
G
A
T
E
W
L
E
G
Y
---------
L
S
S
L
H
L
K
A
F
T
Y
I
N
L
D
--------------------------------------------------------------------------------
26
Fugue
33.34
25%
-71
- C5 -
-
1MWP
-
A4_HUMAN
A:
[28-123]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
A
E
P
Q
I
A
----------
M
F
C
G
R
L
N
M
H
M
N
V
Q
N
G
---
K
W
D
S
D
P
S
G
T
K
T
C
I
D
T
K
E
G
I
L
-----
Q
Y
C
Q
E
V
Y
P
E
L
Q
I
--------
T
N
V
--
V
E
A
N
Q
P
V
T
I
-
Q
N
--
W
--
C
K
----------
R
G
R
K
Q
------
C
K
T
H
P
H
F
V
I
P
Y
R
C
L
V
G
E
F
V
-------------------------------------------------------------------------
20
PsiBlast_PDB
32.49
29%
-125
- C9 -
-
3S9L
-
TFR1_HUMAN
A:
[327-379]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
D
M
V
L
K
D
G
-
F
--------
Q
P
S
--
R
S
I
I
F
A
S
W
S
-
A
G
D
F
G
--
S
V
G
A
T
E
W
L
E
G
Y
---------
L
S
S
L
H
L
K
A
F
T
Y
I
N
L
D
--------------------------------------------------------------------------------
37
HHSearch
31.61
43%
-95
- C5 -
-
2MKC
-
C:
[7-20]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
P
E
N
R
F
-
A
I
M
-
P
G
S
R
W
---------------------------------------------------------------------------------------------------------------------
30
Fugue
29.72
14%
-59
- C6 -
-
5IPW
-
?
A:
[1-633]
GAMGAT
P
E
E
Y
Y
K
A
TGKKIT
E
Y
H
E
S
P
M
L
T
K
L
V
E
E
GKLPP
V
E
Q
R
L
PEE
P
L
V
V
Q
P
VE
K
V
G
Q
F
G
G
T
W
R
R
V
W
KGPSD
R
W
G
I
S
K
L
I
EVKL
A
F
W
DKEGGKLVPGLAK
S
W
E
V
L
ENGR
V
Y
I
F
H
L
R
K
GVKWSDGAPYT
A
H
D
I
V
F
W
V
N
DIVGNDDITPSKPDWYNI
G
V
K
V
E
ALDDY
T
V
K
F
E
F
SKPYGL
F
L
L
K
V
P
Y
G
GFTGAPAHYLKQFHPKYTP
M
E
E
I
E
K
K
MVEGVHNT
W
V
D
L
F
N
D
K
N
DFLENTELPTLSPWKPITDPTEQ
F
Y
I
L
E
R
NPYFWAVDIEGNQLPYID
Y
V
R
H
E
Y
V
KN
D
E
V
I
L
L
K
A
I
S
GEIDMQW
R
H
I
G
G
L
G
A
G
A
G
N
F
T
L
L
M
E
N
S
QSGG
Y
R
V
L
KWIAANGSA
S
R
I
S
L
NYAHSD
E
V
L
R
K
V
F
N
D
V
R
F
R
Q
A
L
S
L
A
IN
R
E
E
I
N
E
ILFNGLA
E
P
R
Q
A
SLVSGSPYFD
P
E
W
E
K
AYAEYD
P
D
R
A
N
K
L
L
D
E
M
GLKWDDKHE
Y
R
L
L
P
D
G
R
P
L
R
F
T
I
T
V
T
G
Q
F
H
V
D
V
W
T
M
V
K
E
Y
W
K
Q
I
G
V
W
V
E
I
E
N
L
E
R
S
L
F
Y
E
R
A
D
A
G
D
F
-----
D
A
M
V
W
N
M
D
R
A
-
A
--------
Q
P
L
SS
P
M
V
I
F
P
G
S
E
N
I
A
D
F
W
--
Y
I
G
W
S
G
W
I
S
Y
Y
I
D
K
N
I
R
G
V
E
P
E
E
V
P
E
G
P
E
P
P
E
V
V
Y
R
L
V
D
L
Y
Y
Q
I
A
S
TPD
P
D
K
I
K
E
L
M
A
E
A
T
K
I
H
R
E
N
LW
M
I
G
T
V
GEDLS
P
A
I
A
K
NNFRNVPE
F
L
V
T
D
DVLR
T
P
L
N
A
MPMQ
F
F
I
E
Q
42
HHSearch
29.39
32%
-217
- C4 -
-
1MM0
-
TERN_PSEUS
A:
[17-35]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Y
F
R
R
A
F
C
D
------
R
S
Q
C
K
C
V
F
V
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------