@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VN11: (2017-11-12 )
MTEVKFVSMPAAELAQVIEKACENAVAKVLAAQEDELLNITQLCERIPGLSYHSFKKLAKEHRFKDIKGRYSLTAVKAALQSH
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.........20.........30........40......---..50-..----......-60.----......-----.70........80..------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTE
V
K
F
VSM
P
-
A
A
E
L
A
Q
V
I
E
K
-
A
C
E
N
A
V
A
K
V
L
AAQE
D
E
L
L
N
I
T
Q
L
C
E
RI---PGL
S
-
Y
H
----
S
F
K
K
L
A
-
K
E
H----
R
F
K
D
IK-----GR
Y
S
L
T
A
V
K
A
A
L
QSH------------------------------------------
15
Fugue
69.67
19%
16
- C2 -
-
5E7P
5
?
B:
[18-744]
P
L
S
H
L
R
L
T
A
R
L
NTSALDSRRG
V
V
R
L
H
P
E
V
L
A
A
L
GIREW
D
A
V
A
L
T
G
T
R
T
T
A
A
V
A
G
VAGPGVPAG
T
A
L
L
D
D
V
T
L
S
N
A
GVREN
A
A
V
L
V
S
P
V
T
V
Y
GAR
S
V
T
V
S
G
S
R
L
A
T
Q
SIS
P
A
T
L
R
M
A
L
LG
K
V
M
T
VG
D
T
V
S
LLPRDS
A
A
T
S
A
L
A
S
S
V
GITWTS
E
L
L
T
V
TAVDPP
G
T
V
S
V
Q
PN
S
V
V
S
WGPPTG
R
H
T
V
S
P
Q
RSEQPVS
F
D
D
V
K
V
T
HPQ
A
V
K
L
D
E
W
L
R
L
S
L
DE
P
E
L
L
K
T
L
GATP
H
L
G
V
L
V
S
G
P
AGVG
K
A
T
M
V
R
A
V
C
A
S
R
R
V
V
E
L
D
G
P
E
V
G
A
LQ
V
D
E
R
L
R
S
V
T
S
A
V
A
A
V
T
E
SG
G
V
L
F
I
A
DVDALLPAGNEMRPPE
P
V
A
T
L
I
L
A
E
L
R
K
A
V
A
TPG
V
A
F
I
A
T
S
AVPENVDARLRAPEVCD
R
E
L
G
L
S
L
P
D
A
T
A
R
R
S
L
L
E
M
L
L
RG
V
P
S
E
DLD
L
G
D
I
A
D
H
T
PGFV
V
A
D
L
A
A
V
V
R
E
G
A
L
R
A
A
A
R
A
S
S
S
D
D
D
P
V
L
R
H
A
D
L
E
G
A
L
T
V
IRPLSRSASEEVSVGSVTLDDVGDM
V
E
T
K
R
A
L
T
E
A
V
L
W
P
L
Q
H
P
D
T
F
S
R
L
GIDPP
R
G
V
L
L
Y
G
P
P
GCGK
T
F
V
V
R
A
L
A
S
SGR
L
S
V
H
A
V
K
G
S
E
L
M
DKWVGS
S
E
K
A
V
R
E
L
F
A
R
A
R
D
S
AP
S
L
V
F
LDEIDALAPRG
V
T
D
K
V
V
A
S
L
L
T
E
L
D
G
I
E
PLRD
V
V
V
L
G
A
T
NRPDLIDPALLRPGR
L
E
R
L
V
F
V
E
P
P
D
A
A
A
R
R
D
I
L
R
T
-
A
G
K
S
-----
I
P
L
A
D
D
--
V
D
L
D
S
L
A
D
D
L
---
D
G
Y
S
-
A
A
----
D
C
V
A
L
L
-
R
E
S
----
A
M
T
A
M
R
-----
R
S
I
D
A
A
D
V
T
A
A
D
V
A
K
A
R
E
T
V
RPSLD
P
A
Q
V
E
S
L
R
E
FAEK-------------------
1
PsiBlast_PDB
63.73
34%
-260
- C2 -
-
5NUG
-
?
A:
[2130-2427]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
P
-
E
Q
E
I
--
L
I
Q
S
-
V
C
E
T
M
V
P
K
L
V
A
--
E
D
I
P
L
L
F
S
L
L
S
D
V
F
---
P
G
V
Q
-
Y
H
--------------------------------------------------------------------------------------
6
PsiBlast_PDB
61.49
28%
-137
- C2 -
-
4MQV
-
RFA2_HUMAN
A:
[204-243]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
T
V
A
Q
N
Q
V
L
N
L
I
K
A
C
P
R
P
---
E
G
L
N
-
F
Q
----
D
L
K
N
Q
L
-
K
H
M
----
S
V
S
S
I
K
--------------------------------------------------------------
5
PsiBlast_PDB
58.23
28%
-141
- C2 -
-
1Z1D
-
RFA2_HUMAN
A:
[202-243]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
N
G
L
T
V
A
Q
N
Q
V
L
N
L
I
K
A
C
P
R
P
---
E
G
L
N
-
F
Q
----
D
L
K
N
Q
L
-
K
H
M
----
S
V
S
S
I
K
--------------------------------------------------------------
4
PsiBlast_PDB
57.98
28%
-156
- C2 -
-
1DPU
-
A:
[31-72]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
N
G
L
T
V
A
Q
N
Q
V
L
N
L
I
K
A
C
P
R
P
---
E
G
L
N
-
F
Q
----
D
L
K
N
Q
L
-
K
H
M
----
S
V
S
S
I
K
--------------------------------------------------------------
21
HHSearch
56.87
9%
-195
- C2 -
-
4HQE
2
?
B:
[12-68]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
T
F
K
I
L
G
R
-
S
W
N
G
L
I
I
N
Y
L
S
R
C
N
D
C
S
A
H
F
S
D
M
K
R
D
L
---
K
T
I
T
-
P
R
A
L
S
L
K
L
S
E
L
A
-
Q
W
E
----
L
V
------------------------------------------------------------------
22
HHSearch
56.61
9%
-188
- C2 -
-
4HQE
2
?
A:
[12-68]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
T
F
K
I
L
G
R
-
S
W
N
G
L
I
I
N
Y
L
S
R
C
N
D
C
S
A
H
F
S
D
M
K
R
D
L
---
K
T
I
T
-
P
R
A
L
S
L
K
L
S
E
L
A
-
Q
W
E
----
L
V
------------------------------------------------------------------
13
Fugue
53.36
23%
-29
- C2 -
-
2PNN
1
TRPV1_RAT
A:
[11-258]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LYD
R
R
S
I
F
D
A
V
A
Q
SNCQELES
L
L
P
F
L
Q
R
S
KKRLTDSEFKDPETGKT
C
L
L
K
A
M
L
N
LHNGQND
T
I
A
L
L
L
D
V
A
R
K
T
DSL
K
Q
F
V
N
ASYTDSYYKGQT
A
L
H
I
A
I
E
R
RN
M
T
L
V
T
L
L
V
E
N
GADVQAAANGDFFKKTKGR
P
G
F
Y
FGEL
P
L
S
L
A
A
C
T
NQ
L
A
I
V
K
F
L
L
Q
N
-
S
W
Q
P
A
D
I
S
A
R
D
S
V
G
N
T
V
L
H
A
L
V
E
V
A
D
N
T
V
D
N
T
K
F
V
T
--------
S
M
Y
N
----
E
I
L
I
L
G
-
A
K
L
HPTL
K
L
E
E
I
T
-----
N
R
K
G
L
T
P
L
A
L
A
A
S
S
G
K
I
G
V
L
A
Y
I
L
Q
R
E
I
H----------------------------
8
Fugue
50.64
17%
4
- C2 -
-
4YJ1
1
?
A:
[1-615]
--------------------------------------------------------------------------------------------------------------------------------GFS
P
L
M
D
F
F
H
S
V
EGRNYGELRSLTNETYQISEN
V
R
C
T
F
LSIQSDPFAP
G
S
Q
V
R
L
V
C
P
CTFSLEKVLQTTDLAAAN
P
C
R
R
V
A
A
E
D
F
I
L
R
S
F
H
A
G
Y
R
N
GIPRRTSGAVQ
V
L
R
P
S
Q
H
V
L
E
R
STVGLVKAHQ
A
E
I
E
I
F
A
R
V
KLPGHGRRID
G
H
G
A
I
D
I
F
YNE
L
V
P
L
L
E
Q
CVVGLN
E
E
D
L
H
Q
H
V
I
C
V
H
D
Q
E
V
L
R
S
N
LLGAGYV
A
F
V
A
N
GAILPRDAGNSDKPLRDNAVPFQSPKSL
E
C
S
F
T
L
PHSG
K
T
I
T
G
M
G
L
P
P
G
L
T
L
I
A
G
G
GFHG
K
S
T
L
L
R
A
L
E
V
GIYNHVPDDGRTYVVVDPT
A
V
K
I
R
A
E
D
R
R
S
V
H
GVDISPFINNLPFGKTTNFFVTADAS
G
S
T
S
Q
A
A
N
I
M
E
A
L
E
L
GSQ
L
L
L
L
D
EDTCATNLMYRD
A
L
M
Q
M
L
V
PRAQEPITPFVER
V
A
D
L
S
QNHG
V
S
S
I
M
V
I
G
GSGQYFPQAR
V
V
L
V
M
N
AY
Q
I
S
D
C
T
K
E
A
K
E
I
A
S
N
S
SLPGDTASVFIPD
V
N
R
C
F
D
P
D
G
S
F
TTVRRGT
K
V
S
G
I
GTE
S
I
R
F
S
E
E
T
I
D
-
L
S
M
V
E
Q
I
V
E
E
-
G
Q
V
N
A
I
A
Q
C
L
A
L
L
Y
D
G
E
P
R
I
V
P
E
M
T
T
K
---
G
G
A
--
L
T
----
Q
L
P
S
P
G
-
G
V
C
----
E
I
Q
R
G
K
-----
F
N
S
N
F
S
S
M
I
A
G
C
C
S
H
Q
H
D
K
RLELRTPS
C
Y
L
P
R
GF
T
S
A
T
R
H
I
E
I
G
A
A
L
N
R
LRT
L
R
T
V
T
29
HHSearch
49.00
20%
-184
- C2 -
-
2HKU
2
?
B:
[25-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
T
A
A
T
E
L
F
L
E
H
G
-
E
G
V
P
I
T
Q
I
C
A
A
A
GAH
P
N
Q
V
-
T
Y
----
Y
Y
G
S
------------------------------------------------------------------------------
9
Fugue
48.94
16%
-82
- C2 -
-
4J2N
-
?
A:
[3-56]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
P
R
A
S
I
Q
Q
T
A
D
Y
L
----
G
V
S
-
T
K
----
T
V
R
N
Y
I
-
A
A
G
----
K
L
K
A
V
R
LGPR
L
I
R
V
E
R
D
S
V
E
A
L
M
R
P
I
------------------------------------------
28
HHSearch
47.32
20%
-177
- C2 -
-
2HKU
-
?
A:
[25-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
T
A
A
T
E
L
F
L
E
H
G
-
E
G
V
P
I
T
Q
I
C
A
A
A
GAH
P
N
Q
V
-
T
Y
----
Y
Y
G
S
------------------------------------------------------------------------------
20
HHSearch
46.15
15%
-354
- C2 -
-
4R4E
1
GLNR_BACSU
A:
[9-34]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
L
F
P
I
G
I
V
M
Q
L
T
----
E
L
S
-
A
R
----
Q
I
R
Y
Y
E
-
E
N
-------------------------------------------------------------------------
3
PsiBlast_PDB
45.72
31%
56
- C2 -
-
5I2G
-
?
A:
[228-312]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
E
M
A
E
K
E
T
D
A
A
R
R
Q
E
L
L
T
I
A
R
V
C
K
N
V
---
P
E
F
P
-
A
E
----
S
F
Q
E
A
C
-
Q
S
F
----
W
F
------------------------------------------------------------------
7
Fugue
44.32
14%
45
- C2 -
-
2I5H
-
?
A:
[16-195]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ED
Y
A
Y
V
LDFMPYGHPDDKRPIHRR
E
P
L
A
Q
V
V
G
ERNF
T
L
L
E
V
S
I
R
K
G
K
Q
P
L
VM
D
R
V
Y
IGKGERDVVYKIK
R
R
L
R
Y
E
D
L
T
P
A
A
-
K
T
E
L
P
Y
V
I
E
H
-
I
I
K
Q
D
E
K
K
Y
V
D
F
F
N
D
S
I
T
T
R
M
H
Q
L
E
L
L
---
P
G
V
G
-
K
K
----
M
M
W
A
I
I
-
E
E
R
----
K
K
R
P
F
E
-----
S
F
E
D
I
A
Q
R
V
K
G
I
Q
R
P
E
K
L
I
V
S
R
I
I
Y
E
I
K
N
P
QTKYKLFTA------------------
16
HHSearch
44.27
24%
-3
- C2 -
-
5KGQ
-
?
A:
[41-78]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
C
G
A
F
---
P
G
L
S
-
W
E
-------
Q
L
Q
-
E
K
K
----
K
G
R
A
A
A
-----
N
G
Y
D
R
S
A
F
F
S
L
V
A
S
D
------------------------------------------
10
Fugue
43.84
16%
58
- C2 -
-
2MQ8
-
?
A:
[1-112]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
L
T
V
E
V
E
V
K
I
T
A
D
D
-
E
N
K
A
E
E
I
V
K
R
-
V
I
D
E
V
E
R
E
V
Q
K
Q
Y
P
N
--
A
T
I
T
R
T
L
T
R
D
---
D
G
T
V
-
E
L
----
R
I
K
V
K
A
D
T
E
E
----
K
A
K
S
I
I
-----
K
L
I
E
E
R
I
E
E
E
L
R
K
R
D
PN
A
T
I
T
R
T
V
RTEVGSSWSLE
H
H
H
H
H
H----------------
35
HHSearch
43.48
19%
-17
- C2 -
-
1I1L
2
ILVE_ECOLI
B:
[191-249]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
-
I
S
E
G
A
G
E
N
L
F
E
V
K
D
G
V
L
F
T
P
P
F
T
S
S
A
L
---
P
G
I
T
-
R
D
----
A
I
I
K
L
A
-
K
E
L
----
G
I
E
V
R
E
-----
Q
V
L
S
R
E
S
L
Y
L
-----------------------------------------------
24
HHSearch
43.41
15%
-42
- C2 -
-
4TVI
1
?
B:
[211-270]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-
V
A
E
T
A
T
S
N
V
F
M
V
R
G
G
E
V
F
T
P
V
P
N
G
T
F
L
---
N
G
I
T
-
R
Q
----
R
V
I
K
L
L
-
R
E
A
----
G
V
S
V
H
E
-----
T
T
L
K
I
E
D
F
R
E
A
----------------------------------------------
2
PsiBlast_PDB
43.11
31%
57
- C2 -
-
5I2A
-
?
A:
[228-271]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
E
M
A
E
K
E
T
D
A
A
R
R
Q
E
L
L
T
I
A
R
V
C
K
N
V
---
P
E
F
P
-
A
E
----
S
F
Q
E
A
C
-
Q
S
F
----
W
F
------------------------------------------------------------------