@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VN24: (2017-11-12 )
MDNSKLPINQIIARINDAAKNSEALVLTAEEVKILSKDIGDKVFIPVLTNEQVVQLVKEGKLGQKINNTKD
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10--....------.....20.......---.30.---.---......40----------.----------..---.....50........60.-.......70------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDNSKL
P
I
N
Q
---
I
I
A
R
------
I
N
DAAKNS
E
A
L
V
L
T
---
A
E
E
V
---
K
---
I
L
S
K
DIGD----------
K
----------
V
F
---
I
P
VLT
N
E
Q
V
V
Q
L
V
K
EGKL-GQKINNTKD------------------------
4
HHSearch
63.65
39%
-12
- C3 -
-
3BHP
-
YNZC_BACSU
B:
[3-38]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
A
---
K
I
A
R
------
I
N
E
L
A
A
K
A
K
A
G
V
I
T
---
E
E
E
K
---
A
EQQ
K
L
R
Q
E
Y
L
-------------------------------------------------------------------------------
31
Fugue
59.87
21%
38
- C2 -
-
2K5C
-
?
A:
[8-95]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAKCP
I
C
G
S
P
L
K
W
E
E
---
L
I
E
E
M
LIIEN
F
E
E
I
V
K
D
R
E
R
F
L
A
Q
---
V
E
E
F
---
V
---
F
K
C
P
V
C
G
E
----------
E
----------
F
Y
GKT
L
P
R
R
E
A
E
K
V
F
E
L
L
N
D
F
K
G
-
G
I
D
W
E
N
K
R
V
K
L
K---------------------
5
HHSearch
58.83
39%
15
- C3 -
-
3BHP
-
YNZC_BACSU
C:
[3-38]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
A
---
K
I
A
R
------
I
N
E
L
A
A
K
A
K
A
G
V
I
T
---
E
E
E
K
---
A
EQQ
K
L
R
Q
E
Y
L
-------------------------------------------------------------------------------
24
Fugue
57.57
28%
-49
- C3 -
-
1E0E
-
POL_HV2RO
A:
[1-46]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
E
K
------
I
E
P
A
Q
E
E
H
E
K
Y
------
H
S
N
V
---
K
---
E
L
S
H
K
F
G
---------------------------
I
P
N
L
V
A
R
Q
I
V
N
S
C
A
Q
C
Q
Q
K---------------------------------
17
HHSearch
53.63
17%
-96
- C3 -
-
4WZS
1
?
B:
[49-98]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
M
---
L
T
L
E
------
A
N
K
A
C
E
E
E
K
K
K
T
I
S
---
Y
E
H
V
---
Y
---
K
A
L
K
N
L
G
F
----------
E
----------
S
Y
---
V
E
S
C
M
-----------------------------------------------
6
HHSearch
53.14
37%
23
- C3 -
-
2HEP
-
YNZC_BACSU
A:
[3-40]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
A
---
K
I
A
R
------
I
N
E
L
A
A
K
A
K
A
G
V
I
T
---
E
E
E
K
A
E
Q
Q
---
K
L
R
Q
E
Y
L
K
----------
G
-------------------------------------------------------------------
14
HHSearch
52.59
24%
-24
- C3 -
-
3GDO
-
IOLW_BACSU
B:
[104-163]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
P
M
T
A
T
---
A
E
E
G
---
E
---
T
L
K
R
A
A
D
E
----------
K
G
V
L
L
S
V
YHNR
R
W
---
D
N
D
F
L
--
T
I
K
K
L
I
S
E
G
S
L
-
E
D
I
------------------------------
18
HHSearch
52.06
20%
-105
- C3 -
-
3KUX
-
?
A:
[99-152]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
F
T
V
T
---
L
S
Q
A
---
N
---
A
L
K
E
H
A
D
D
A
G
L
L
L
S
V
FHN
R
----------
R
W
---
D
S
D
F
--
L
T
L
K
T
L
L
A
E
G
S
L
-
G
N
V
V
-----------------------------
22
HHSearch
51.44
33%
13
- C- -
-
2HNG
-
?
A:
[77-105]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
N
H
---
I
D
G
R
I-----
V
------
N
E
P
S
E
L
N
---
Q
E
E
V
---
E
---
T
L
A
R
P
C
L
-------------------------------------------------------------------------------
10
HHSearch
50.00
18%
-246
- C3 -
-
3OBH
2
?
A:
[52-72]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
M
G
K
G
I
T
L
S
---
N
E
E
F
---
Q
---
T
M
V
D
A
F
K
-------------------------------------------------------------------------------
13
HHSearch
49.90
12%
-128
- C3 -
-
4G92
-
?
B:
[43-84]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
F
---
I
T
S
E
------
A
S
E
K
C
Q
Q
E
K
R
K
T
V
N
---
G
E
D
I
---
L
---
F
A
M
T
S
L
G
F
----------
E
----------
N
Y
---
A
E
A
L
K
-----------------------------------------------
15
HHSearch
49.76
16%
-95
- C3 -
-
1JH6
-
CPD_ARATH
B:
[53-102]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
E
---
A
K
K
M
------
F
E
S
A
C
D
G
L
K
A
Y
T
A
T
---
V
D
R
V
---
S
---
T
G
T
-
F
F
F
Q
----------
C
----------
V
F
---
L
L
L
Q
T
T
P
E
V
M
E
A
G
E
--------------------------------------
30
Fugue
49.54
23%
36
- C1 -
-
2EEB
-
A:
[1-106]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSSGSSGSDDARR
L
T
V
M
S
L
Q
E
S
G
L
K
V
N
Q
P
A
S
F
A
I
R
------
L
N
G
A
K
G
K
I
D
A
K
V
H
S
PSG
A
V
E
E
---
C
---
H
V
S
E
L
E
P
D
----------
K
----------
Y
A
---
V
R
F
I
P
H
E
N
G
V
H
T
I
D
V
K
F
N
-
G
S
H
V
V
G
S
P
F
K
V
R
V
G
EPGQAG-------------
19
HHSearch
49.49
24%
-127
- C3 -
-
5G49
-
NFYB6_ARATH
A:
[49-89]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
F
---
I
T
G
E
------
A
N
E
R
C
Q
R
E
Q
R
K
T
I
T
---
A
E
D
V
---
L
---
W
A
M
S
K
L
G
F
----------
D
----------
D
Y
---
I
E
P
L
T
-----------------------------------------------
12
HHSearch
49.37
19%
-241
- C3 -
-
4G06
2
?
A:
[57-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
M
G
K
G
I
T
L
S
---
N
E
E
F
---
Q
---
T
M
V
D
A
F
K
-------------------------------------------------------------------------------
29
Fugue
49.27
30%
-6
- C3 -
-
2HEP
-
YNZC_BACSU
A:
[1-42]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
S
N
A
---
K
I
A
R
------
I
N
E
L
A
A
K
A
K
A
G
V
I
T
---
E
E
E
K
---
A
---
E
Q
Q
K
L
R
Q
E
----------
Y
----------
L
K
---
G
F
R
-------------------------------------------------
7
HHSearch
47.84
19%
-22
- C3 -
-
2D4G
-
YJCG_BACSU
A:
[47-98]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
D
Q
---
L
V
S
H
------
L
R
N
I
A
K
E
S
H
P
L
V
L
K
---
M
T
K
Y
---
S
---
S
F
A
P
V
-
N
N
----------
V
----------
I
Y
---
I
K
A
E
P
T
E
E
L
K
T
L
N
E
K
-------------------------------------
26
Fugue
47.70
25%
80
- C3 -
-
3UGM
-
PTHX1_XANOP
A:
[169-1048]
KPKVRELVAHIVALSQHPAALGTVAVTYQHIITALAT
H
E
D
I
V
G
V
G
KQWSG
A
R
A
L
E
A
L
L
T
D
A
G
E
L
RGPPLQLDT
G
Q
L
V
K
I
A
K
R
GG
V
T
A
M
E
A
V
H
A
SRNALTPLNLT
P
A
Q
V
V
A
I
A
SNNG
G
K
Q
A
L
E
T
V
Q
R
L
L
P
V
L
C
Q
A
HGLTPA
Q
V
V
A
I
A
SHDG
G
K
Q
A
L
E
T
M
Q
R
L
L
P
V
L
C
Q
A
HGLP
P
D
Q
V
V
A
I
A
SNIG
G
K
Q
A
L
E
T
V
Q
R
L
L
PVLCQAHGLT
P
D
Q
V
V
A
I
A
SHGG
G
K
Q
A
L
E
T
V
Q
R
LLPVLCQAHGLT
P
D
Q
V
V
A
I
A
SHDG
G
K
Q
A
L
E
T
V
Q
R
LLPVLCQAHGLT
P
D
Q
V
V
A
I
A
SNGG
G
K
Q
A
L
E
T
V
Q
R
L
L
P
V
L
C
Q
AHGLT
P
D
Q
V
V
A
I
A
S
NGG
K
Q
A
L
E
T
V
Q
R
LLPVLCQAHGLT
P
D
Q
V
V
A
I
A
SHDG
G
K
Q
A
L
E
T
V
Q
R
LL
P
V
L
C
Q
THGLT
P
A
Q
V
V
A
I
A
SHDG
G
K
Q
A
L
E
T
V
Q
Q
L
L
P
V
L
C
Q
AHGLT
P
D
Q
V
V
A
I
A
SNIG
G
K
Q
A
L
A
T
V
Q
R
LLPVLCQAHGLTPDQV
V
A
I
A
S
N
GGG
K
Q
A
L
E
T
V
Q
R
L
L
P
V
L
C
Q
AHGLT
P
D
Q
V
V
A
I
A
SNGG
G
K
Q
A
L
E
T
V
Q
R
LLPVLCQAHGLTQVQVVAIASNIGGKQA
L
E
T
V
Q
R
L
LPVLCQA
H
G
L
T
P
A
Q
V
V
A
I
A
SHDG
G
K
Q
A
L
E
T
V
Q
R
L
L
P
V
L
C
Q
AHGLT
P
D
Q
V
V
A
IASNGG
G
K
Q
A
L
E
T
V
Q
R
LLPGLT
Q
E
Q
V
V
A
I
A
SNNGG
K
Q
A
L
E
T
V
Q
R
L
L
P
V
L
C
Q
AHGLT
P
D
Q
V
V
A
I
A
SNGG
G
K
Q
A
L
E
T
V
Q
R
LLPVLCQAHGLT
P
A
Q
V
V
A
I
A
SNIG
G
K
Q
A
L
E
T
V
Q
R
L
L
P
V
L
C
Q
DHGLT
L
A
Q
V
V
A
I
A
SNIG
G
K
Q
A
L
E
T
V
Q
R
L
LPVLCQGLT
Q
D
Q
V
V
A
I
A
SNIG
G
K
Q
A
L
E
T
V
Q
R
LLPVL
C
Q
D
H
G
L
T
P
D
Q
---
V
V
A
-------
I
A
S
N
I
G
G
K
Q
A
L
E
T
V
---
Q
R
L
L
---
P
---
V
L
C
Q
D
H
G
------------------------------
L
T
L
D
Q
V
V
A
I
A
S
N
G
G
--
K
Q
A
L
E
T
V
Q
R
L
L
P
V
L
C
Q
DHGLTPDQVVAIASNSG
3
PsiBlast_PDB
46.64
25%
-54
- C3 -
-
3TJ0
-
?
A:
[294-345]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
L
V
D
Q
---
V
I
G
S
------
R
N
P
G
I
A
D
I
E
D
L
T
L
L
---
A
R
S
M
---
V
---
V
V
R
P
S
V
A
S
----------
K
----------
V
V
---
L
P
I
S
I
Y
A
K
I
P
Q
L
----------------------------------------
11
HHSearch
46.01
18%
-179
- C3 -
-
2L3A
-
?
B:
[52-73]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
M
G
K
G
I
T
L
S
---
N
E
E
F
---
Q
---
T
M
V
D
A
F
K
G
------------------------------------------------------------------------------