@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VN46: (2017-11-12 )
MKSAFKRFVQQSHITVRTEKYKWLAEAKIWSSNSYLNEGYLQLTERYSKGEKKNNHGGMFI
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....--------....10.-....------...20-----------........30-..--.......40........50........60----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
K
S
A
F
--------
K
R
F
V
Q
QS-
H
I
T
V
------
R
T
E
K
Y
-----------
K
W
L
A
E
A
K
IW--SS--NSY
L
N
E
G
Y
L
Q
L
T
E
R
YSKGEKKNNHGGMFI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
65.57
18%
-
- C6 -
-
5EE0
-
OLA1_ORYSJ
A:
[16-387]
--------------------------------------------------------------------------------------------------------------------------------------------------------------PILGRFSSH
L
K
I
G
I
V
G
L
P
NVG
K
S
T
F
F
N
I
V
T
K
L
SIPAE
N
F
P
F
C
--------
T
I
D
P
N
E
A
-
R
V
Y
V
------
P
D
E
R
F
-----------
D
W
L
C
Q
L
Y
K
P
--
K
S
--
E
V
---
S
A
Y
L
E
I
N
D
I
A
G
L
G
-----
L
G
N
A
F
L
S
H
I
R
A
V
DGIF
H
V
L
R
AFEDKEVTHIDDSVD
P
V
R
D
L
E
T
I
G
E
E
L
R
L
K
D
I
E
F
V
Q
N
K
I
D
D
L
E
K
S
M
K
R
S
ND
K
Q
L
K
L
E
H
E
L
C
E
K
V
K
A
H
L
E
D
GKDVRFGDWK
S
A
D
I
E
I
L
N
T
F
QLLTA
K
P
V
V
Y
L
V
N
M
S
E
K
D
Y
Q
R
KKNKF
L
P
K
I
H
A
W
V
Q
E
H
GG
E
T
I
I
P
F
S
C
A
F
E
R
L
L
A
D
MP
P
D
E
A
A
K
Y
C
A
E
N
QIASV
I
P
K
I
I
K
T
G
F
A
A
I
H
L
I
Y
F
F
T
A
G
PD
E
V
K
C
W
Q
I
R
R
QTK
A
P
Q
A
A
G
T
I
H
T
D
F
E
R
G
FICAEVMK
F
D
D
L
K
E
L
GS
E
S
A
V
K
A
A
GKYRQEGKTYVVQDG
D
I
I
F
F
K
FN
31
Fugue
64.08
21%
-26
- C5 -
-
5FMR
-
?
A:
[12-270]
---------------------------------------------------------------------------------------------------------E
V
R
I
L
F
S
TAKGESHTHKAGF
K
Q
L
F
R
R
L
R
S
T
Y
R
P
D
K
V
D
KDDFT
L
D
T
L
R
S
AHILVLGGPK
E
K
F
T
A
P
E
V
D
M
L
K
K
F
V
K
N
G
G
S
I
L
I
L
M
S
EGGEEK
A
G
T
N
I
--------
N
Y
F
L
E
Q
F
-
G
M
S
V
N
N
D
A
V
V
R
T
T
H
Y
-----------
K
Y
L
H
P
K
E
V
L
--
I
S
--
D
G
I
L
N
R
A
V
I
T
-----
D
E
F
R
V
F
D
G
T
G
L
E
Y
V
F
P
F
G
A
T
L
S
V
Q
K
P
A
V
P
V
L
SSGKIAYPMNRPV
G
A
V
W
A
Q
P
G
Y
G
R
I
A
V
L
GSCAMFDDKWLDKEE
N
S
K
I
M
D
F
F
F
K
F
L
EPHSKIQLN
D
I
D
A
E
E
PDV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
59.83
25%
76
* C5 *
-
4P5F
-
?
A:
[8-374]
---------------------------------------------------------------------------------------------------------------------------LT
P
T
E
A
A
V
L
R
E
L
R
L
H
RPQLPL
D
T
L
L
F
T
D
P
NKDP
D
D
V
V
T
Y
T
I
A
K
Q
L
Q
A
D
GFLRLT
D
V
V
V
T
L
G
D
A
D
M
R
S
Q
R
A
Q
L
A
K
G
V
F
--------
D
R
L
A
L
P
D
-
V
R
V
A
------
R
G
Q
D
Y
P
MT
S
T
Q
A
R
E
H
S
K
F
L
A
E
G
A
A
L
RA
A
P
--
D
A
V
H
T
D
G
V
R
A
M
C
E
R
L
A
T
S
P
H
K
---
L
G
M
V
V
IAGM
T
D
A
S
A
L
L
A
E
A
G
D
L
V
R
E
K
VA
S
I
T
I
MGGIDPARDADG
L
V
Q
P
D
TRAYNNATD
I
H
A
A
R
A
L
Y
R
R
A
Q
Q
L
GI
P
L
R
I
L
T
KEAAYKAAVP
P
A
F
Y
E
G
I
A
R
NGH
P
V
G
E
Y
L
R
D
V
Q
K
N
A
L
K
G
L
W
E
G
I
Q
A
NLIPGLD
T
A
W
F
F
R
T
FVAGALS
F
D
A
I
W
P
Q
VT
K
L
N
L
Y
D
P
L
T
L
L
A
A
L
P
G
T
A
R
L
LFQPTPMHREGAS
P
V
E
H
V
G
HAEVVR
P
E
K
A
R
L
L
L
S
A
L
A
K
A
A
L
V--------------------------------------------------------------
29
Fugue
59.68
21%
-23
- C4 -
-
3JCM
-
RUXF_YEAST
W:
[11-83]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
P
V
N
P
--------
K
P
F
L
K
G
L
-
V
N
H
R
------
V
G
V
K
L
-----------
K
T
E
Y
R
G
T
L
V
--
S
T
--
D
N
Y
F
N
-
L
Q
L
N
E
A
E
E
F
V
A
G
V
S
H
G
T
L
G
E
I
F
I
RCNNVLYIRE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
57.96
28%
90
- C6 -
-
5JEQ
-
?
A:
[68-120]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
H
--------
R
Q
L
F
Q
Q
A
L
H
S
P
V
------
L
T
N
L
N
-----------
V
W
Y
V
P
E
A
V
K
--
T
R
--
Y
A
H
L
N
A
N
W
L
E
M
N
N
R
L
S
K
G
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
56.41
33%
-44
- C6 -
-
1VIQ
-
ADPP_ECOLI
A:
[168-206]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
V
V
S
------
R
E
Q
A
Y
-----------
Q
W
V
E
E
G
K
I
D
--
N
A
--
A
S
V
I
A
L
Q
W
L
Q
L
H
H
Q
A
L
K
N
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
55.88
18%
-
- C6 -
-
3LT7
-
YADA1_YEREN
A:
[-7-46]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-
A
N
S
Y
------
T
D
V
T
V
-----------
S
N
S
T
K
K
A
I
R
--
E
S
--
N
Q
Y
T
D
H
K
F
H
Q
L
E
N
R
L
D
K
L
E
K
R
L
L
K
L
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
55.68
28%
79
- C6 -
-
5JGP
-
?
A:
[68-117]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
H
--------
R
Q
L
F
Q
Q
A
L
H
S
P
V
------
L
T
N
L
N
-----------
V
W
Y
V
P
E
A
V
K
--
T
R
--
Y
A
H
L
N
A
N
W
L
E
M
N
N
R
L
S
K
G
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
54.85
33%
-49
- C6 -
-
1G9Q
1
ADPP_ECOLI
A:
[169-207]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
V
V
S
------
R
E
Q
A
Y
-----------
Q
W
V
E
E
G
K
I
D
--
N
A
--
A
S
V
I
A
L
Q
W
L
Q
L
H
H
Q
A
L
K
N
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
54.83
33%
-45
- C6 -
-
1G0S
-
ADPP_ECOLI
A:
[169-207]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
V
V
S
------
R
E
Q
A
Y
-----------
Q
W
V
E
E
G
K
I
D
--
N
A
--
A
S
V
I
A
L
Q
W
L
Q
L
H
H
Q
A
L
K
N
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
54.52
33%
-22
- C6 -
-
1GA7
-
ADPP_ECOLI
A:
[169-207]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
V
V
S
------
R
E
Q
A
Y
-----------
Q
W
V
E
E
G
K
I
D
--
N
A
--
A
S
V
I
A
L
Q
W
L
Q
L
H
H
Q
A
L
K
N
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
54.29
28%
72
- C6 -
-
5IJI
2
?
A:
[68-117]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
H
--------
R
Q
L
F
Q
Q
A
L
H
S
P
V
------
L
T
N
L
N
-----------
V
W
Y
V
P
E
A
V
K
--
T
R
--
Y
A
H
L
N
A
N
W
L
E
M
N
N
R
L
S
K
G
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
54.24
33%
-46
- C6 -
-
1KHZ
-
ADPP_ECOLI
A:
[169-207]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
V
V
S
------
R
E
Q
A
Y
-----------
Q
W
V
E
E
G
K
I
D
--
N
A
--
A
S
V
I
A
L
Q
W
L
Q
L
H
H
Q
A
L
K
N
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
52.65
12%
16
* C6 *
-
2O3J
4
UGDH_CAEEL
A:
[3-471]
DQVFGKVS
K
V
V
C
V
G
AG
Y
V
G
G
P
T
C
A
M
I
A
H
K
C
PH
I
T
V
T
V
V
D
MN
T
A
K
I
A
E
W
N
SDKLP
I
Y
E
P
G
L
D
E
I
V
F
A
A
RGRN
L
F
F
S
SD
I
P
K
A
I
A
E
AD
L
I
F
I
S
V
N
TPTKMYGRGKGMAPDL
K
Y
V
E
S
V
S
R
T
I
A
Q
YAG
G
P
K
I
V
V
EKSTVPVK
A
A
E
S
I
G
C
I
L
R
E
A
QKL
K
F
Q
V
L
S
N
P
E
FLAEGT
A
M
K
D
L
A
NPD
R
V
L
I
G
G
E
SS
P
E
G
L
Q
A
V
A
E
L
V
R
I
Y
--------
E
N
W
V
P
R
N
-
R
I
I
T
------
T
N
--------------
T
W
S
S
E
L
S
K
L
--
V
A
--
N
A
F
L
A
Q
R
I
S
S
I
N
S
I
S
A
V
C
E
A
T
G
A
E
I
S
E
V
A
H
A
V
G
Y
DTRIGSKFLQASV
G
F
G
G
SC
F
Q
K
D
V
L
S
L
V
Y
L
C
E
S
L
NL
P
Q
V
A
D
Y
W
Q
G
V
I
N
I
N
N
W
Q
R
R
R
F
A
D
K
I
I
A
E
L
FNTVTD
K
K
I
A
I
FGFAFKKNTGDTRES
S
A
I
H
V
I
K
H
L
M
E
E
H
A
K
L
S
V
Y
D
PKVQ
K
S
Q
M
L
N
D
L
A
S
V
TS
A
Q
D
V
E
R
L
I
T
V
E
SD
P
Y
A
A
A
RGAH
A
I
V
V
LTEWDEFVELN
Y
S
Q
I
H
N
D
MQHP
A
A
I
F
D
GRLILD
Q
K
A
L
R
E
I
GFR
T
F
A
I
GTSPDQ--------------------------------------------------------------
10
PsiBlast_PDB
51.94
40%
-146
- C6 -
-
1E19
1
CPKA_PYRFU
A:
[246-270]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
K
E
-----------
Q
W
L
R
E
V
K
V
E
--
E
L
--
R
K
Y
Y
E
E
G
H
F
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
51.53
28%
92
- C6 -
-
5JEF
-
?
A:
[68-121]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
H
--------
R
Q
L
F
Q
Q
A
L
H
S
P
V
------
L
T
N
L
N
-----------
V
W
Y
V
P
E
A
V
K
--
T
R
--
Y
A
H
L
N
A
N
W
L
E
M
N
N
R
L
S
K
G
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
51.52
12%
35
- C6 -
-
2Q3E
2
UGDH_HUMAN
A:
[2-467]
-MFEIK
K
I
C
C
I
G
AG
Y
V
G
G
P
T
C
S
V
I
A
H
M
C
PE
I
R
V
T
V
V
D
VN
E
S
R
I
N
A
W
N
SPTLP
I
Y
E
P
G
L
K
E
V
V
E
S
CRGKNLFFSTN
I
D
D
A
I
K
E
ADLVFIS
V
N
T
P
TKTYGMGKGRAADL
K
Y
I
E
A
C
A
R
R
I
V
Q
N
SN
G
Y
K
I
V
T
E
KSTVPVR
A
A
E
S
I
R
R
I
F
D
A
N
TKPN
L
N
L
Q
V
L
S
N
P
E
FLAEGT
A
I
K
D
L
K
NPD
R
V
L
I
G
G
D
ET
P
E
G
Q
R
A
V
Q
A
L
C
A
V
Y
--------
E
H
W
V
P
R
E
-
K
I
L
T
------
T
N
--------------
T
W
S
S
E
L
S
K
L
--
A
A
--
N
A
F
L
A
Q
R
I
S
S
I
N
S
I
S
A
L
C
E
A
T
G
A
D
V
E
E
V
A
T
A
I
G
M
DQRIGNKFLKASV
G
F
G
G
SC
F
Q
K
D
V
L
N
L
V
Y
L
C
E
A
L
NL
P
E
V
A
R
Y
W
Q
Q
V
I
D
M
N
D
Y
Q
R
R
R
F
A
S
R
I
I
D
S
L
FNTVTD
K
K
I
A
I
L
G
FAFKKDTGDTRES
S
S
I
Y
I
S
K
Y
L
M
D
E
G
A
H
L
H
I
Y
D
PKVP
R
E
Q
I
V
V
D
L
SHDQVSRL
V
T
I
S
KD
P
Y
E
A
C
DGAH
A
V
V
I
C
T
EW
D
M
F
K
E
LD
Y
E
R
I
H
K
K
MLKP
A
F
I
F
D
GRRVLDGL
H
N
E
L
Q
T
I
GFQ
I
E
T
I
GKKV------------------------------------------------------------------
28
Fugue
45.25
12%
39
- C6 -
-
3FJU
-
ICAA_ASCSU
B:
[1-65]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
K
C
L
SDTDCTNG
E
K
C
V
Q
K
N
-
K
I
C
S
------
T
I
V
E
I
-----------
Q
R
C
E
K
E
H
--------
F
T
I
P
C
K
S
N
N
D
C
--
Q
V
W
A
H
E
K
I
C
N
K
G
C
C
W
D
LL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
44.56
26%
-28
- C6 -
-
3HJN
1
KTHY_THEMA
A:
[47-94]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
K
I
L
L
E
E
-
E
V
T
P
------
K
A
E
L
F
-----------
L
F
L
A
S
R
N
L
L
--
V
T
E
I
K
Q
Y
L
S
E
G
Y
A
V
L
L
D
R
Y
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
41.09
13%
-24
- C6 -
-
4JE3
-
CHL4_YEAST
B:
[382-419]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
K
V
-
G
F
T
L
------
K
N
E
I
N
-----------
S
R
I
I
T
I
K
L
K
--
F
N
--
G
N
D
I
F
G
G
L
H
E
L
C
D
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------