@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VN92: (2017-11-13 )
MFTRTVQTLKNSTDLVQRFALPEIWEDFELRRLSNKDRYKHYILIFKNVVSQKKDWEDVKVVAEIQERNHNLRFNIKISKQYPELAAYEKLLEAKINAIINQSSLVIS
Atome Classification :
(19 SA)
-----------------------------------------------------------------.........-10--.........-20..--.-.....30........40...-----------.-....50........60------.-----.......70...--------......80---.....-------..-..90......-..100......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------MF
T
R
T
V
Q
T
L
-K---N
S
T
D
L
V
Q
R
F-A
L
P
E
--
I
-
W
E
D
F
E
L
R
RLSNKD
R
Y
K
H
Y
I
L
-----------
I
-
F
K
N
V
VSQKK
D
W
E
D
V
K
V
------
V
-----
A
E
I
Q
ERNH-
N
L
R
--------
F
N
I
K
ISK----QY
P
E
L
-------
A
A
-
Y
E
K
L
L
E
A
K
I
N
-
A
I
INQS
S
L
V
IS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
79.10
20%
-
* C3 *
-
4Q28
-
PEPL_HUMAN
A:
[1645-1754]
-----------------------------------------------------------------
G
H
H
H
H
H
H
S
H
M
R
---
R
S
I
V
V
I
H
P
D
-
T
G
R
E
--
L
S
P
E
E
A
H
R
A
G
L
I
D
W
N
-------------------
M
F
V
K
L
R
S
Q
E
C
D
W
E
E
I
S
V
KGPN
G
E
S
-----
S
V
I
H
D
R
K
S
-
G
K
K
--------
F
S
I
E
E
A
L
----
Q
S
G
R
L
-------
T
P
-
A
Q
Y
D
R
Y
V
N
K
D
M
S
I
Q
E
L
A
V
L
V
S
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
60.70
15%
-22
- C4 -
-
1SET
-
SYS_THET2
A:
[1-110]
-----------------------------------------------------------------
M
V
D
--
L
K
R
L
-
R
---
Q
E
P
E
V
F
H
R
--
A
I
R
E
--
K
-
G
V
A
L
D
L
E
A
L
L
A
L
D
R
E
V
Q
E
L
K
-----------
K
-
R
L
Q
E
V
Q
T
E
R
N
Q
V
A
K
R
V
------
P
KAP
P
E
E
K
E
A
L
I
A
R
-
G
K
A
--------
L
G
E
E
A
K
R
----
L
E
E
A
L
-------
R
E
-
K
E
A
R
L
E
A
L
L
L
-
Q
V
P
L
P
P
W
P
G
A
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
49.43
30%
110
- C6 -
-
2Z61
-
MFNC_METJA
A:
[239-281]
------------------------------------------------------------------------------------------------------------------------------------------------
E
I
------
I
-----
E
A
I
L
K
L
Q
Q
-
N
L
F
--------
I
S
A
P
T
I
S
----
Q
Y
A
A
L
-------
K
A
-
F
E
K
E
T
E
R
E
I
N
-
S
M
I
K
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
49.30
30%
-302
- C6 -
-
3D7V
-
B:
[3-25]
------------------------------------------------------------------------------------------
R
P
E
--
I
-
W
I
A
Q
E
A
R
R
I
G
D
E
A
N
A
Y
Y
A
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
48.56
11%
2
* C4 *
-
3NQN
2
?
A:
[4-158]
------------------------------------L
S
A
E
Q
S
F
T
L
R
H
PHG
Q
A
A
A
L
A
F
V
R
E
P
AAAL
A
G
V
R
F
L
R
G
L
-
D
---
S
D
G
E
Q
V
W
G
E
-
L
L
V
T
V
P
L
-
L
G
E
V
D
L
P
F
R
S
E
I
V
R
T
P
Q
G
A
E
-----------
L
-
R
P
L
T
L
T
G
E
R
A
W
V
A
V
S
G
------
Q
-----
A
T
A
A
E
G
G
E
M
A
F
A
--------
F
Q
F
Q
A
H
L
AEG
W
G
G
A
A
F
-------
E
K
M
V
Q
A
A
A
G
R
T
L
E
-
R
V
A
K
A
L
P
E
G
L
A
A
G
LPPA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
46.40
17%
58
- C3 -
-
3WIH
-
ROBO1_HUMAN
A:
[1-96]
-----------------------------------------------------------------
A
P
P
Q
G
V
T
V
S
-
K
NDG
N
G
T
A
I
L
V
S
W
Q
P
P
P
E
--
M
-
V
Q
E
Y
K
V
W
C
L
G
N
E
T
R
Y
H
---------------------
I
N
K
T
V
D
G
S
T
F
S
V
------
V
-------
I
P
F
L
V
P
-
G
I
R
--------
Y
S
V
E
V
A
A
----
S
G
S
G
V
-------
K
S
-
E
P
Q
F
I
Q
L
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
43.96
23%
86
* C6 *
-
5KDS
10
?
A:
[20-530]
HMASVLELEMRGD
S
I
S
E
A
K
K
R
KVWN
F
Q
D
W
Q
I
T
G
L
S
A
R
AG
D
K
I
T
V
Y
V
D
V
AEG
D
P
T
P
T
L
L
Y
K
Q
S
LTQ
H
G
G
A
T
S
F
Q
L
-
K
---
P
G
K
N
E
I
T
----
I
P
E
--
I
---
N
Y
E
S
N
G
I
P
-
K
D
V
I
Q
G
G
D
L
-----------
F
-
F
T
N
Y
K
S
D
S
-------------------------
Q
K
R
-
A
P
K
--------
V
R
I
E
G
A
S
----
K
Y
P
V
F
I
L
GKSD
E
N
E
-
V
M
K
E
L
E
A
Y
V
E
-
K
I
K
A
E
P
K
T
T
P
N
I
F
A
V
S
S
NK
S
L
E
F
V
Q
A
T
Y
A
L
D
W
Y
K
K
N
NKTP
K
Y
T
A
E
Q
W
D
Q
Y
I
A
D
A
M
G
F
W
GFDNSKDVN
S
D
F
N
F
R
I
M
PMVKNLSGGAFMNAGNG
V
I
G
I
R
PGN
Q
D
A
I
L
A
ANKG
W
G
V
A
H
E
L
G
H
N
F
DTGGRTIVEVTNN
M
M
P
L
F
F
E
S
K
YKTKT
R
I
T
D
Q
NIWENNTYPKVGLDDYSNNELYNKADSTHLAQL
A
P
L
W
Q
L
Y
L
Y
DNT
F
Y
G
K
F
E
R
Q
F
R
E
R
DFGNKN
R
E
D
I
Y
K
S
W
V
V
A
A
S
D
A
M
ELDL
T
E
F
F
A
R
H
G
I
R
V
D
D
K
V
K
E
D
L
AKYPKPDKKIYYLNDLAMNYKGDGFTEN
A
K
V
S
V
S
T
S
G
S
NG
N
I
K
L
S
F
S
V
D
DENKDNIL
G
Y
E
I
R
R
DGKYVGFTSNDSFVDTKSNLDED
G
V
Y
V
V
T
P
Y
D
RKLNTLN
P
I
E
V
N
14
Fugue
42.53
12%
-2
- C4 -
-
1JY8
2
ISPF_ECOLI
A:
[1-155]
--------------------------------------------------------------M
R
I
G
H
G
F
D
V
H
A
F
-
G
---
G
E
G
P
I
I
I
---
G
G
V
R
--
I
-
P
Y
E
K
G
L
L
A
H
S
D
G
D
V
A
L
H
A
L
T
D
A
L
L
G
A
A
ALGD
I
-
G
K
L
F
P
D
T
D
P
A
F
K
G
A
D
S
------
R
-----
E
L
L
R
E
A
W
R
-
R
I
Q
A
K
G
Y
T
L
G
N
V
D
V
T
I
I
A
----
Q
A
P
K
M
-------
L
P
-
H
I
P
Q
M
R
V
F
I
A
-
E
D
L
G
C
H
M
D
D
V
N
V
K
A
T
T
TEKLGFTGRGE
G
I
A
C
E
A
V
A
L
L
I------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
36.31
15%
-127
- C1 -
-
4LLG
-
VRPI_BPT7
M:
[15-33]
-----------------------------------------------------------------------------------------------------------------
K
F
W
A
-----------
T
-
V
E
S
S
E
H
S
----
F
E
V
P
I
------
Y
-----
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
33.13
13%
-303
- C5 -
-
4EMH
-
LSM4_SCHPO
I:
[52-71]
----------------------------------------------------------------------------------------------------------------------------------------------
K
F
F
R
------
L
-----
P
E
C
Y
I
R
G
N
-
N
I
K
--------
Y
L
R
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
32.52
13%
-37
- C4 -
-
2GIB
-
NCAP_CVHSA
A:
[3-99]
------------------------------------------------------------------------
N
V
-
T
---
Q
A
F
G
R
R
G
P
E
-
Q
T
Q
G
--
N
-
F
G
D
Q
D
L
I
R
Q
G
T
D
Y
K
H
W
P
Q
I
A
-----------
Q
-
F
A
P
S
A
S
A
F
F
G
M
S
R
I
G
M
------
E
-----
V
T
P
S
G
T
W
L
-
T
Y
H
--------
G
A
I
K
L
D
D
----
K
D
P
Q
F
-------
K
D
-
N
V
I
L
L
N
K
H
I
D
-
A
Y
K
T
F
P
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
32.33
36%
117
- C6 -
-
3KJ1
-
B:
[1-22]
------------------------------------------------------------------------------------------
R
P
E
--
I
-
W
A
A
Q
E
L
R
R
I
G
D
E
F
N
A
Y
Y
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
32.01
16%
-111
* C5 *
-
1I8F
1
?
E:
[43-80]
----------------------------------------------------------------------------------------------------------------
Q
H
V
N
L
-----------
L
-
L
E
D
A
E
E
I
--
I
D
G
N
V
Y
K
------
R
-----
G
T
M
V
V
R
G
E
-
N
V
L
--------
F
I
S
P
V
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
31.95
30%
145
- C6 -
-
3KZ0
-
?
C:
[1-23]
------------------------------------------------------------------------------------------
R
P
E
--
I
-
W
A
A
Q
E
I
R
R
I
G
D
E
N
N
A
Y
Y
A
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
28.39
13%
-42
- C5 -
-
4EMK
-
LSM5_SCHPO
A:
[40-77]
------------------------------------------------------------------------------------------------------------------
V
N
I
-----------
V
-
L
K
D
V
T
E
Y
D
T
V
T
G
V
T
E
K
------
H
-----
S
E
M
L
L
N
G
N
-
G
M
C
--------
M
L
I
P
G
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
27.87
13%
-24
- C5 -
-
3SWN
-
LSM5_SCHPO
A:
[41-80]
-----------------------------------------------------------------------------------------------------------------
Y
V
N
I
-----------
V
-
L
K
D
V
T
E
Y
D
T
V
T
G
V
T
E
K
------
H
-----
S
E
M
L
L
N
G
N
-
G
M
C
--------
M
L
I
P
G
G
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
27.24
15%
-36
- C2 -
-
2WNM
-
VRPI_BPT7
A:
[34-53]
----------------------------------------------------------------------------------------------------------------
K
K
F
W
A
-----------
T
-
V
E
S
S
E
H
S
----
F
E
V
P
I
------
Y
-----
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
23.58
8%
-99
- C6 -
-
3HS2
-
PHD_BPP1
C:
[28-51]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
R
R
G
-
R
E
P
--------
A
V
I
V
S
K
A
----
T
F
E
A
Y
-------
K
K
-
A
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
23.39
8%
-75
- C6 -
-
3HS2
-
PHD_BPP1
F:
[28-51]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
R
R
G
-
R
E
P
--------
A
V
I
V
S
K
A
----
T
F
E
A
Y
-------
K
K
-
A
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------