@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VNF0: (2017-11-14 )
MNRDYEQFPDDDNGNVLWQMVEDGDDLTELHEIEFSIAFQDQQNAEQCAMHLLYQEQKISLFQDDSVEPNEWIITIFVTMEPEYSDIVDLEQWFSTIAEQFNGEYDGWGCMAYVFDEEEDDILQ
Atome Classification :
(20 SA)
--------------------------..--------.......10-------------.........20.....--...30------.-.......40-----.----------------.------------------------.--------------.....50.........-60.....--..----.70--.....--...80...-.-.....90-........100--------------------....-....110.......120..------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------MN--------R
D
Y
EQFPD--------------DDNG
N
V
L
W
Q
MVEDGD
D
--
L
T
E
L
H
------
E
-
I
E
F
S
I
A
FQD-----Q----------------Q------------------------
N
--------------
A
E
Q
C
A
M
-
H
L
L
Y
Q
E
Q
K
I
-
S
LFQDDS--VE----PN
E
--
W
I
I
T
I
--
F
V
T
M-EPE-
Y
-
S
D
I
V
D
L
E
-
Q
W
F
S
T
I
A
E
Q
F---------------------NGEY-DG
W
G
C
M
A
Y
V
FDEEEDDILQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
85.12
23%
-70
- C5 -
-
1NXI
-
?
A:
[23-120]
--------------------------------------------------------------
D
I
I
Q
A
L
L
E
D
G
S
D
--
P
D
A
L
Y
------
E
-
I
E
H
H
L
F
A
E
D
-----
F
----------------
D
------------------------
K
--------------
L
E
K
A
A
V
-
E
A
F
K
M
G
F
E
V
-
L
E
A
E
E
T
E
--
D
E
----
D
G
N
--
K
L
L
C
F
--
D
A
T
M
-
Q
S
A
-
L
D
A
K
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E
Q
V
E
K
L
V
N
L
A
E
K
F
---------------------
D
I
I
Y
-
D
G
W
G
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
77.76
19%
68
- C5 -
-
1NXI
-
?
A:
[1-132]
--------------------------
M
S
HQ
D
D
Y
L
S
V
E
E
L
I
E
I
Q
K
--------------
E
E
T
R
D
I
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D
--
P
D
A
L
Y
------
E
-
I
E
H
H
L
F
A
E
D
-----
F
----------------
D
------------------------
K
--------------
L
E
K
A
A
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-
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A
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E
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-
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E
A
E
E
T
E
--
D
E
----
D
G
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--
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M
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-
A
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-
A
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-
E
K
L
V
N
L
A
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K
F
---------------------
D
I
I
Y
-
D
G
W
G
T
--
Y
Y
E
G
L
E
H
H
H
H
H
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
76.46
19%
-48
- C5 -
-
1NXI
-
?
A:
[13-127]
--------------------------------------
L
I
E
I
Q
K
--------------
E
E
T
R
D
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I
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--
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A
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Y
------
E
-
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A
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D
-----
F
----------------
D
------------------------
K
--------------
L
E
K
A
A
V
-
E
A
F
K
M
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F
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-
L
E
A
E
E
T
E
--
D
E
----
D
G
N
--
K
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C
F
D
A
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S
-
A
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-
A
-
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V
-
E
K
L
V
N
L
A
E
K
F
---------------------
D
I
I
Y
-
D
G
W
G
T
Y
Y
E
G
L
E
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
67.45
18%
-4
- C5 -
-
4LNI
-
GLN1A_BACSU
L:
[111-226]
------------------------------------------------------------
L
K
R
I
L
K
E
M
E
D
L
G
F
S
D-
F
N
L
G
P
------
E
-
P
E
F
F
L
F
K
L
D
-----
E
----------------
K
GEPTLELNDKGGYFDLAPTDLGEN
C
--------------
R
R
D
I
V
L
-
E
L
E
E
M
G
F
E
I
-
E
A
S
H
H
E
V
---
A
----
P
G
Q
--
H
E
I
D
F
--
K
Y
A
G
-
A
V
R
S
C
-
D
D
I
Q
T
F
K
-
L
V
V
K
T
I
A
R
K
H
---------------------
G
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
63.52
23%
-38
- C4 -
-
3B4Q
-
?
A:
[4-93]
--------------------------
L
N
--------
S
A
P
T
--
P
R
--------------
D
V
V
A
N
A
-------
P
A
P
--
V
Q
A
A
V
------
A
-
G
A
Q
E
Y
A
A
Q
A
-----
G
----------------
L
------------------------
N
--------------
T
E
E
L
A
V
-
D
A
L
Y
N
A
I
K
V
-
R
L
A
G
G
I
P
----------------------------------
P
Q
I
E
-
A
F
Y
Q
A
N
R
T
N
F
---------------------
N
G
F
Y
M
A
N
R
G
A
I
D
F
I
F
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
63.26
18%
4
- C5 -
-
4LNF
-
GLN1A_BACSU
K:
[111-226]
------------------------------------------------------------
L
K
R
I
L
K
E
M
E
D
L
G
F
S
D-
F
N
L
G
P
------
E
-
P
E
F
F
L
F
K
L
D
-----
E
----------------
K
GEPTLELNDKGGYFDLAPTDLGEN
C
--------------
R
R
D
I
V
L
-
E
L
E
E
M
G
F
E
I
-
E
A
S
H
H
E
V
---
A
----
P
G
Q
--
H
E
I
D
F
--
K
Y
A
G
-
A
V
R
S
C
-
D
D
I
Q
T
F
K
-
L
V
V
K
T
I
A
R
K
H
---------------------
G
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
55.26
18%
-56
- C2 -
-
2MPW
-
EAE_ECO27
A:
[39-153]
--------------------------
M
N
---------
G
E
N
Y
F
K
L
--------------
G
S
D
S
K
L
L
T
H
N
S
Y
Q
N
R
L
--
F
Y
T
L
K
------
T
-
G
E
T
V
A
D
L
S
K
-----
S
----------------
Q
------------------------
D
--------------
I
N
L
S
T
I
-
W
S
L
N
K
H
L
Y
S
-
S
E
S
E
M
M
K
--
A
A
----
P
G
Q
--
Q
I
I
L
P
--
L
K
K
L
-
P
F
E
-
Y
-
S
A
L
P
L
L
G
-
S
A
P
L
V
A
A
G
G
V
---------------------
A
G
H
T
-
N
G
--------
S
G
S
E
N
L
Y
F
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
55.24
18%
41
- C4 -
-
4WID
1
?
A:
[10-362]
KDMAL
Q
H
A
V
D
L
L
E
K
M
L
A
D
E
E
KLTEFN
L
G
--------
D
P
L
F
E
S
A
N
--------------
D
D
P
I
K
T
L
E
E
I
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Q
E
G
D
D
--
V
V
G
A
H
------
Q
L
V
V
T
Q
I
K
L
R
V
-----
Q
----------------
R
------------------------
N
--------------
R
R
L
A
D
E
-
I
I
R
E
Q
L
T
D
I
R
K
V
F
S
D
K
F
--
E
K
----
L
E
Q
--
G
I
Q
N
S
--
Y
L
L
L
-
D
K
L
-
K
-
T
P
F
Q
D
M
R
-
C
L
F
E
V
A
N
E
Q
F
---------------------
N
D
T
P
----------
V
P
P
Q
Y
K
E
F
M
V
C
L
K
Q
I
V
Q
Y
A
V
N
S
S
SL
E
K
F
V
M
LIT
K
K
D
D
I
K
D
R
V
T
Y
T
C
M
K
Y
L
L
M
A
M
Q
G
TGGPKAI
N
N
E
E
H
A
K
L
F
FQLSNYDD
L
T
D
A
N
H
D
G
L
E
L
I
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K
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D
KEQ
K
E
V
A
F
H
V
N
N
F
T
H
L
V
T
T
L
G
M
A
L
Y
K
E
G
H
Q
K
N
D
E
A
M
L
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M
H
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I
T
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D
Q
V
R
V
L
I
L
Y
L
I
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E
I
V
H
A
I
H
T
NSNQS
N
D
E
L
I
D
G
L
K
P
K
V
R
I
V
I
N
E
F
H
A
T
L
M
M
GIDK
M
K
F
Y
S
L
N
E
L
R
E
I
V
N
D
K
I
12
HHSearch
55.21
13%
-10
- C5 -
-
4HPP
1
?
A:
[112-235]
------------------------------------------------------------
L
R
A
E
V
E
R
Y
R
D
S
G
L
Q
--
V
I
A
A
F
------
E
-
H
E
F
S
L
L
G
L
P
-----
G
ERPAAAFS
L
Q
A
Q
R
A
A
G
Q
------------------------
F
--------------
P
G
W
L
V
S
-
A
L
A
Q
A
G
T
E
P
-
E
M
F
L
P
E
Y
---
G
----
Q
R
Q
--
Y
E
V
T
C
--
R
P
A
Q
-
G
V
A
A
A
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D
R
A
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N
V
R
-
E
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T
R
E
V
A
R
Q
M
---------------------
G
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
51.58
12%
-31
- C5 -
-
5DM3
1
?
C:
[144-277]
----------------------------------------------------------
A
I
L
K
R
Q
L
A
R
L
E
A
M
G
L
E
--
A
I
M
A
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------
E
-
L
E
F
F
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F
E
K
S
-----
L
----------------
D
------------------------
E
I
R
KGRFRTT
K
E
E
H
V
L
R
P
L
R
N
-
H
L
H
A
A
G
I
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V
-
E
G
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G
E
A
---
G
----
A
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Q
--
E
E
L
N
I
--
R
C
A
K
-
A
L
D
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A
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D
Y
H
T
I
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K
-
H
A
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K
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I
A
W
Q
Q
---------------------
G
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
48.00
10%
-127
- C5 -
-
3HZ7
1
?
A:
[15-74]
-------------------------------------------
V
--------------
I
R
A
K
K
A
L
A
E
L
G
E
A
G
G
V
--
V
---------------
T
V
L
V
D
N
-----
D
----------------
I
------------------------
S
--------------
R
Q
N
L
Q
K
-
M
A
E
G
M
G
Y
Q
S
-
E
Y
L
E
K
D
---------
N
G
V
--
I
E
V
T
I
--
V
A
G
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
46.81
13%
-163
- C5 -
-
3LVJ
-
TUSA_ECO57
C:
[42-80]
---------------------------------------------------------------------------------------------
I
I
A
D
D
-----
P
----------------
A
------------------------
T
--------------
T
R
D
I
P
G
-
F
C
T
F
M
E
H
E
L
-
V
A
K
E
T
D
---------
G
L
P
--
Y
R
Y
L
I
--
R
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
46.73
20%
-116
* C4 *
-
5WUR
-
RSIW_BACSU
C:
[3-72]
-------------------------------------------
C
--------------
P
E
Q
I
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Q
L
M
H
M
H
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D
G
D
I
--
L
----------
P
-
K
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V
L
N
E
H
-----
L
----------------
E
------------------------
T
--------------
C
E
K
C
R
K
-
H
F
Y
E
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-
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L
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R
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T
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HV
E
A
----
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A
D
--
F
T
A
N
V
--
M
A
K
L
-
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
45.50
14%
37
- C3 -
-
1IWP
-
?
G:
[4-141]
------------------------KT
M
R
--------
V
Q
D
Y
P
L
A
T
--------------
R
C
P
E
H
I
L
T
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T
G
K
P
L
T
D
--
I
T
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------
V
-
L
S
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E
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G
P
Q
D
VRISR
Q
----------------
T
------------------------
L
--------------
E
Y
Q
A
Q
I
-
A
E
Q
M
Q
R
H
A
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-
A
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F
R
R
A
--
A
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LIAI
P
D
E
--
R
I
L
A
I
--
Y
N
A
L
-
R
P
F
-
R
-
S
S
Q
A
E
L
L
-
A
I
A
D
E
L
E
H
T
W
---------------------
H
A
T
V
-
N
A
A
F
V
R
E
S
A
E
V
Y
Q
Q
R
H
K
L
R
KGS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
45.36
17%
-55
- C5 -
-
2VUG
1
?
A:
[326-379]
------------------------------------------------------------------------------------------
L
F
K
V
R
V
K
R
-----
I
----------------
E
------------------------
T
--------------
A
Y
K
M
V
T
-
H
F
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---
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----
K
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--
W
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F
--
K
R
L
Y
-
P
D
A
-
T
-
N
E
I
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
41.98
11%
-151
* C5 *
-
1DCJ
-
TUSA_ECOLI
A:
[42-79]
----------------------------------------------------------------------------------------------
I
A
D
D
-----
P
----------------
A
------------------------
T
--------------
T
R
D
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E
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A
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---------
G
L
P
--
Y
R
Y
L
I
--
R
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
40.60
14%
61
- C1 -
-
2KQ2
-
?
A:
[1-147]
--------------------------
M
D
DR------
T
E
Y
D
V
Y
T
D
GSYVNG
Q
Y
A
W
A
Y
A
F
V
K
D
G
K
V
H
Y
E
D
A
D
V
G
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N
--
P
A
A
A
T
MRNV
A
G
E
-
I
A
A
A
L
Y
A
V
K
-----
K
----------------
A
------------------------
S
--------------
Q
L
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K
I
-
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I
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Y
A
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I
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A
F
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--
W
K
----
A
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N
--
E
F
T
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A
--
Y
A
K
L
-
M
N
Q
-
Y
-
R
G
I
Y
S
F
E
-
K
V
K
A
H
S
G
N
E
F
---------------------
N
D
Y
V
-
D
M
K
A
K
S
A
L
G
I
R
D
L
E
H
H
H
H
H
H-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
39.84
12%
29
- C5 -
-
2J9I
-
LGSN_MOUSE
E:
[103-214]
------------------------------------------------------------
A
R
A
A
L
A
Q
L
Q
A
A
G
A
A
AG
L
L
S
A
F
------
I
-
A
D
F
C
I
F
G
V
P
-----
E
----------------
V
INSKTISFPASTTAAAAD------
Q
--------------
P
Q
E
A
A
A
--
G
G
A
A
G
A
A
A
-
G
A
A
G
G
A
A
---
A
----
A
G
A
--
A
E
I
C
F
--
L
P
E
A
A
G
A
A
-
A
A
D
N
A
F
T
L
R
-
T
G
L
Q
E
V
A
R
R
Y
---------------------
N
A
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
39.21
16%
-251
- C5 -
-
2YVQ
-
CPSM_HUMAN
A:
[1343-1397]
------------------------------------------------------------
H
T
A
F
L
K
A
M
L
S
T
G
F
K
--
I
P
Q
K
G
--------
I
L
I
G
I
Q
Q
S
F
-----
R
----------------
P
------------------------
R
--------------
F
L
G
V
A
E
-
Q
L
H
N
E
G
F
K
L
-
F
A
T
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
37.88
15%
24
* C6 *
-
5ID3
-
MCU_CAEEL
A:
[1-153]
-------------------------M
A
A
--------
L
S
V
D
E
Y
K
L
--------------
S
R
E
K
K
L
L
L
Q
L
E
N
A
E
T
L
--
L
A
P
L
H
------
D
-
A
K
R
K
I
E
Q
E
A
-----
E
----------------
A
------------------------
H
--------------
T
D
R
V
A
W
A
G
F
A
A
S
G
V
Q
T
-
G
L
F
A
R
L
T
--
W
W
----
E
Y
S
--
W
D
I
V
E
--
P
V
T
Y
-
F
A
T
-
Y
-
S
T
V
A
A
T
F
-
G
Y
Y
L
Y
T
Q
Q
S
F
EYPSARERVYTKQFYRRAQKQ
N
F
D
I
-
E
K
Y
N
R
L
V
T
E
V
D
E
L
R
N
Q
L
K
R
L
R
D
P
LE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------