@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VNH4: (2017-11-16 )
MNQNDKRKMMKGLYIVPLAAATLLLGACATTVKPTYVSPTQYQSLSCQQLQSEYNRIQQYIDNGVQTPKSTGMGVGLGLGGGWGRGGWGFGPSISVNMGQSSSTKNTELSRVLGQQEAIVQAAQFKNCPIIVRKKTN
Atome Classification :
(20 SA)
-------------------....-----.....10.....---...20........30........-----40....---....50........60........70........80........90....----..----..100.......110.......120.......130.....--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------MN
Q
N
-----
D
K
R
K
M
M
KG
L
Y
I
V
---
P
L
A
A
A
T
L
L
L
G
A
CATTVKPTYVSP-----TQYQSL---
S
C
Q
Q
L
Q
S
E
Y
N
R
I
Q
Q
Y
I
D
NGVQTPKSTGM
G
V
G
LGLGGGWGRGGWGFG
P
S
I
S
----
V
N----MGQSSSTK
N
T
E
L
S
R
V
LG
Q
Q
E
A
I
V
Q
A
A
QFKNC
P
I
I
V
R
KKTN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
67.12
22%
-48
- C2 -
-
1O9J
1
ALDH1_ELEED
A:
[348-423]
-------------------------------------------------------------------------------------
K
A
Q
H
N
K
I
M
E
L
I
E
S
G
----
K
K
E
G
A
K
L
E
C
G
-
G
G
P
W
G
N
K
G
Y
F
I
Q
P
T
V
F
----
S
N
----
V
T
D
D
M
R
I
A
K
E
E
---
I
F
G
---
P
V
Q
Q
I
M
K
F
K
S
L
D
E
V
I
K
R
A
N
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
66.35
22%
-51
- C2 -
-
4X4L
1
AL1A1_HUMAN
A:
[348-423]
-------------------------------------------------------------------------------------
K
E
Q
Y
D
K
I
L
D
L
I
E
S
G
----
K
K
E
G
A
K
L
E
C
G
-
G
G
P
W
G
N
K
G
Y
F
V
Q
P
T
V
F
----
S
N
----
V
T
D
E
M
R
I
A
K
E
E
---
I
F
G
---
P
V
Q
Q
I
M
K
F
K
S
L
D
D
V
I
K
R
A
N
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
65.45
22%
-51
- C2 -
-
4WJ9
-
AL1A1_HUMAN
A:
[348-423]
-------------------------------------------------------------------------------------
K
E
Q
Y
D
K
I
L
D
L
I
E
S
G
----
K
K
E
G
A
K
L
E
C
G
-
G
G
P
W
G
N
K
G
Y
F
V
Q
P
T
V
F
----
S
N
----
V
T
D
E
M
R
I
A
K
E
E
---
I
F
G
---
P
V
Q
Q
I
M
K
F
K
S
L
D
D
V
I
K
R
A
N
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
65.30
22%
-54
- C2 -
-
4WP7
-
AL1A1_HUMAN
A:
[348-423]
-------------------------------------------------------------------------------------
K
E
Q
Y
D
K
I
L
D
L
I
E
S
G
----
K
K
E
G
A
K
L
E
C
G
-
G
G
P
W
G
N
K
G
Y
F
V
Q
P
T
V
F
----
S
N
----
V
T
D
E
M
R
I
A
K
E
E
---
I
F
G
---
P
V
Q
Q
I
M
K
F
K
S
L
D
D
V
I
K
R
A
N
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
63.26
35%
-
- C2 -
-
4YF9
-
?
A:
[18-73]
-------------------------------------------------------------------------------------------------------
R
R
T
T
M
G
V
P
H
I
K
A
G
N
W
G
S
A
G
Y
G
F
G
Y
V
Q
A
----
Q
D
N
L
C
T
M
A
D
S
F
L
T
Y
R
G
E
R
S
R
H
L
G
G
S
A
Q
L
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
54
Fugue
58.47
13%
-101
- C2 -
-
3WHJ
-
PSMD9_YEAST
A:
[3-119]
-------------------
M
E
E
E
-----
E
L
S
K
L
L
A
N
V
K
I
D
---
P
S
L
T
S
R
I
S
---------------------
Q
I
D
S
F
---
K
L
S
E
L
M
V
L
K
T
D
I
E
T
Q
L
E
A
Y
F
S
V
L
E
Q
Q
G
----
I
G
M
D
S
A
Y
P
R
------
S
D
V
D
----
V
L
----
Q
V
T
M
I
R
K
N
V
N
M
L
K
N
D
L
N
H
L
L
Q
R
S
H
V
L
L
N
Q
H
F
D
N
M
N
V
K
S
N
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
60
Fugue
58.36
14%
18
- C2 -
-
4Q7O
2
?
A:
[4-136]
-------------------
M
K
N
N
IF
L
N
L
N
K
K
S
I
N
N
N
H
F
V
I
---
S
I
F
F
E
T
I
Y
Q
F
E
T
K
D
T
L
L
E
C
F
K
N
I
-----
T
T
T
G
H
F
---
G
V
I
G
A
Q
Y
E
K
I
D
A
T
R
W
I
G
D
Y
E
E
V
N
---------------
G
F
E
Y
I
D
K
A
P
S
I
Y
----
F
S
----
V
G
D
D
F
N
P
E
E
L
I
I
P
I
N
L
A
Y
H
Y
F
N
I
A
I
S
D
F
L
I
A
H
P
E
Y
Q
K
K
C
K
E
I
Q
K
T
Y--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
55
Fugue
55.46
19%
95
- C2 -
-
3CM8
-
?
A:
[12-471]
IEPFLKTTPR
P
L
R
L
P
D
G
P
P
C
S
Q
R
-----
S
K
F
L
L
M
D
A
L
K
L
S
IEI
P
L
Y
D
A
I
K
C
M
K
T
F
F
G
W
K
E
P
N
I
V
K
P
HEKGI
N
P
N
Y
L
L
---
A
W
K
Q
V
L
A
E
L
Q
D
I
----
E
N
E
E
K
I
P
K
T
K
N
M
R
K
T
S
Q
L
K
W
A
L
G
E
N
---
M
A
P
E
K
V
----
D
F
----
E
D
C
K
D
V
S
E
P
K
P
R
S
L
A
S
W
I
Q
S
E
F
N
K
A
C
E
L
T
D
S
S
W
I
E
L
D
E
I
I
A
S
M
R
R
N
Y
F
T
A
E
V
S
HC
R
A
T
E
Y
I
M
K
G
V
Y
I
N
T
A
L
L
N
A
S
C
A
AMDDF
Q
L
I
P
M
I
S
K
C
R
T
KEG
R
R
K
T
N
L
Y
G
F
I
I
K
G
RSHLRNDT
D
V
V
N
F
V
S
M
E
F
S
LTDPRLEPHKWEK
Y
C
V
L
EI
G
D
M
L
L
R
T
AI
G
Q
V
S
R
P
M
F
L
Y
V
R
T
N
G
T
S
K
I
K
M
K
W
G
M
E
MR
R
C
L
L
Q
S
L
Q
Q
I
E
S
M
I
E
A
ESSVKEKDM
T
K
E
F
F
E
NKSETWPIGESPK
G
M
E
E
G
S
I
G
K
V
C
R
T
L
L
A
K
S
V
F
N
S
L
Y
AS
P
Q
L
E
G
F
S
A
E
S
R
K
L
L
L
I
V
Q
A
L
R
D
NLEPGTFD
L
G
G
L
Y
E
A
I
E
E
C
LIND
P
W
V
L
L
N
A
S
W
F
N
S
F
L
T
H
A
L
K
57
Fugue
54.68
24%
-214
* C2 *
-
5KC1
1
ATG38_YEAST
A:
[123-151]
-------------------------------------------------------------------------
L
S
P
I
---
N
D
P
L
L
M
S
I
L
N
R
L
Q
F
N
L
N
N
D
I
Q
L
K
T
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
49.40
29%
-63
- C2 -
-
1FJ2
-
LYPA1_HUMAN
A:
[178-225]
--------------------------------------
L
V
---
P
L
M
F
G
S
L
T
V
E
K
L
K
T
L
V
N
P
A
N
V
T
F
-----
K
T
Y
E
G
M
---
M
H
S
S
C
Q
Q
E
M
M
D
V
K
Q
F
I
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
56
Fugue
49.27
8%
-125
- C2 -
-
1L8C
-
A:
[1-95]
-------------------
A
D
P
E
-----
K
R
K
L
I
Q
Q
Q
L
V
L
L
---
L
H
A
H
K
C
Q
R
R
E
Q
A
N
G
-------
E
V
-----
R
A
C
S
L
P
---
H
C
R
T
M
K
N
V
L
N
H
M
T
H
----------------------------------------
C
Q
----
A
G
K
A
C
Q
V
A
H
C
A
S
S
R
Q
I
I
S
H
W
K
N
C
T
R
H
D
C
P
V
C
L
P
L
K
N
A
S
D
K
R-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
49.03
29%
-79
- C2 -
-
5SYM
3
LYPA1_HUMAN
A:
[176-223]
--------------------------------------
L
V
---
P
L
M
F
G
S
L
T
V
E
K
L
K
T
L
V
N
P
A
N
V
T
F
-----
K
T
Y
E
G
M
---
M
H
S
S
C
Q
Q
E
M
M
D
V
K
Q
F
I
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
45.65
35%
-58
- C2 -
-
1BU2
-
CGH2_SHV21
A:
[88-126]
---------------------
Q
G
-----
T
K
K
T
L
Q
K
---------
I
G
A
A
C
V
L
I
G
S
K
I
R
T
V
K
P
M
T
V
S
K
-----
L
T
Y
L
S
C
---
D
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
61
Fugue
44.05
10%
-39
- C2 -
-
3AEI
-
?
A:
[1-94]
-------------------
M
E
A
V
-----
R
A
Y
E
L
Q
L
E
L
Q
Q
I
---
R
T
L
R
Q
S
L
E
L
K
M
K
E
L
E
Y
A
E
G
I
I
T
S
-----
L
K
-------------
S
E
R
R
I
Y
R
A
F
S
D
L
L
V
E
I
-----------------------------------------
T
K
D
E
A
I
E
H
I
E
R
S
R
L
V
Y
K
R
E
I
E
K
L
K
K
R
E
K
E
I
M
E
E
L
S
K
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
43.72
42%
-146
- C2 -
-
4K1O
-
A:
[177-204]
--------------------------------------------
I
Q
A
A
K
N
L
M
N
A
V
V
L
T
V
K
A
S
Y
V
A
S
-----
T
K
Y
Q
K
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
59
Fugue
43.58
14%
-53
- C2 -
-
5IP0
-
?
A:
[3-109]
------------------M
D
V
I
K
-----
S
F
T
E
Q
M
Q
G
F
A
A
P
---
L
T
R
Y
N
Q
L
L
A
S
N
I
E
Q
L
T
R
L
Q
L
A
S
A
-----
N
A
Y
A
E
L
---
G
L
N
Q
L
Q
A
V
S
K
V
Q
D
T
-------------------------------
Q
S
L
A
A
----
L
G
----
T
V
Q
L
E
T
A
S
Q
L
S
R
Q
M
L
D
D
I
Q
K
L
S
A
L
G
Q
Q
F
K
E
E
L
D
V
L
T
A
D
G
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
43.29
35%
41
- C2 -
-
4YFB
-
?
A:
[14-69]
-------------------------------------------------------------------------------------------------------
R
R
T
T
M
G
V
P
H
I
K
A
G
N
W
G
S
A
G
Y
G
F
G
Y
V
Q
A
----
Q
D
N
L
C
T
M
A
D
S
F
L
T
Y
R
G
E
R
S
R
H
L
G
G
S
A
Q
L
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
41.89
35%
26
- C2 -
-
4YFA
-
?
A:
[14-69]
-------------------------------------------------------------------------------------------------------
R
R
T
T
M
G
V
P
H
I
K
A
G
N
W
G
S
A
G
Y
G
F
G
Y
V
Q
A
----
Q
D
N
L
C
T
M
A
D
S
F
L
T
Y
R
G
E
R
S
R
H
L
G
G
S
A
Q
L
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
HHSearch
41.88
11%
-101
- C2 -
-
2AXO
-
?
A:
[38-75]
--------------------------------------------------------
A
-
Q
E
A
V
K
G
V
V
-----
E
L
F
T
S
Q
GCA
S
C
P
P
A
D
E
A
L
R
K
M
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
41.26
35%
25
- C2 -
-
5C9I
-
?
A:
[14-69]
-------------------------------------------------------------------------------------------------------
R
R
T
T
M
G
V
P
H
I
K
A
G
N
W
G
S
A
G
Y
G
F
G
Y
V
Q
A
Q
D
N
L
C
T
----
M
A
D
S
F
L
T
Y
R
G
E
R
S
R
H
L
G
G
S
A
Q
L
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------