@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VNL1: (2017-11-17 )
MIFMTNRHETDLVNEDTLKKKRGRPKCFDEQQVLEKAMLLFWEHGYEATSISDLTHALEITAPSLYSAFGDKAGLFYKSIDYYLANEACPIETIFLEAKTAKIAFELYLYDNVKRLVQPNKPAGCMLVVAAMNCSDATQEVQQNLLDKRIKTKEKLLKRLEQGVEQGDLPTNAPLQEMTDFYATVIQGLTIQARDGASTEQLHKVVEHAMKAWTLF
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80........90.....-.-..100......--.110.......120.......130.......140------........150.......160.......170.......180.......190.......200.......210....
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
M
I
F
MTNRHETDLV
N
E
D
T
L
K
KKRGRPKCF
D
E
Q
Q
V
L
E
K
A
M
L
L
F
W
EHGYEAT
S
I
S
D
L
T
H
A
LEIT
A
P
S
L
Y
S
A
FGDKAGL
F
Y
K
S
I
D
Y
Y
LANEACP
I
E
T
I
F
L
-E-A
K
T
A
K
I
A
F
E
L
Y
--
L
Y
D
N
V
K
R
LVQPNKPA
G
C
M
L
V
V
A
AMNC
S
D
A
T
Q
E
V
-------
Q
Q
N
L
L
D
K
R
I
K
T
K
E
K
L
L
K
R
L
E
Q
G
V
EQGDLPTNA
P
L
Q
E
M
T
D
F
Y
A
T
V
IQ
G
L
T
I
Q
ARDGA
S
T
E
Q
L
H
K
V
V
E
H
A
M
K
A
WTLF
25
HHSearch
82.05
35%
-137
- C1 -
-
2I10
2
?
B:
[13-195]
-----------------------------
D
Q
V
A
L
Q
T
A
M
E
L
F
W
R
Q
G
Y
E
G
T
S
I
T
D
L
T
K
A
L
G
I
N
P
P
S
L
Y
A
A
F
G
S
K
R
D
L
F
E
K
T
L
D
R
Y
M
C
E
R
T
L
Q
L
E
E
A
M
V
---
R
P
T
A
H
E
A
V
L
D
F
--
L
T
G
R
V
E
V
F
T
--
G
Q
P
F
G
C
M
T
V
Q
A
G
L
A
S
--
P
H
H
E
I
-------
V
D
L
L
T
A
A
R
E
Q
M
R
Q
T
V
L
D
R
F
E
K
A
L
A
D
G
D
L
P
A
G
T
D
C
T
A
L
A
R
Y
V
M
A
A
V
Y
G
L
S
V
E
A
A
S
G
A
P
R
E
E
L
T
A
A
A
I
L
A
A
Q
V
V
---
1
PsiBlast_PDB
80.40
35%
-117
- C1 -
-
2I10
1
?
A:
[12-184]
----------------------------
D
D
Q
V
A
L
Q
T
A
M
E
L
F
W
R
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G
Y
E
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R
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M
C
E
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E
E
A
M
V
-
R
--
P
T
A
H
E
A
V
L
D
F
--
L
T
G
R
V
E
V
F
T
------
G
C
M
T
V
Q
A
G
L
A
S
G
E
P
H
H
E
I
-------
V
D
L
L
T
A
A
R
E
Q
M
R
Q
T
V
L
D
R
F
E
K
A
L
A
D
G
D
L
P
A
G
T
D
C
T
A
L
A
R
Y
V
M
A
A
V
Y
G
L
S
V
E
A
A
S
G
A
P
R
E
E
L
--------------
3
PsiBlast_PDB
71.77
26%
-78
- C1 -
-
4AC6
-
ACNR_CORGL
A:
[17-181]
------------------------------
Q
E
I
L
E
G
A
R
R
C
F
A
E
H
G
Y
E
G
A
T
V
R
R
L
E
E
A
T
G
K
S
R
G
A
I
F
H
H
F
G
D
K
E
N
L
F
L
A
-----
L
A
R
E
D
A
----------
A
R
M
A
E
V
V
S
E
N
G
--
L
V
E
V
M
R
G
M
L
E
D
P
E
R
Y
D
W
M
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R
L
E
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Q
L
R
T
D
P
V
F
R
A
K
W
I
D
H
Q
S
V
L
D
E
A
V
R
V
------
R
L
S
R
N
V
D
K
G
Q
M
R
T
D
V
P
I
E
V
L
H
T
F
L
E
T
V
L
D
G
F
I
S
R
L
A
T
G
A
S
T
E
G
L
S
E
V
L
D
---------
4
PsiBlast_PDB
71.68
26%
-77
- C1 -
-
4ACI
2
ACNR_CORGL
A:
[17-181]
------------------------------
Q
E
I
L
E
G
A
R
R
C
F
A
E
H
G
Y
E
G
A
T
V
R
R
L
E
E
A
T
G
K
S
R
G
A
I
F
H
H
F
G
D
K
E
N
L
F
L
A
-----
L
A
R
E
D
A
----------
A
R
M
A
E
V
V
S
E
N
G
--
L
V
E
V
M
R
G
M
L
E
D
P
E
R
Y
D
W
M
S
V
R
L
E
I
S
K
Q
L
R
T
D
P
V
F
R
A
K
W
I
D
H
Q
S
V
L
D
E
A
V
R
V
------
R
L
S
R
N
V
D
K
G
Q
M
R
T
D
V
P
I
E
V
L
H
T
F
L
E
T
V
L
D
G
F
I
S
R
L
A
T
G
A
S
T
E
G
L
S
E
V
L
D
---------
29
HHSearch
70.27
17%
-138
- C1 -
-
3QBM
6
?
A:
[3-192]
-----------------------
R
K
G
Q
E
T
R
E
R
V
V
A
Q
A
A
A
L
F
N
V
S
G
Y
A
G
T
A
I
S
D
I
M
A
A
T
G
L
E
K
G
G
I
Y
R
H
F
E
S
K
E
Q
L
A
L
A
A
F
D
Y
A
A
E
K
V
R
E
R
F
A
V
G
L
A
-
G
-
H
K
H
T
V
D
T
I
I
A
F
--
L
D
V
F
R
S
Y
A
E
R
P
P
L
V
G
G
C
P
I
L
N
T
A
I
E
S
D
D
T
N
P
M
L
-------
R
E
R
V
R
A
V
I
D
E
W
R
E
T
I
R
T
L
V
Q
T
G
I
A
R
G
E
I
R
P
E
V
D
A
D
R
L
A
L
L
I
I
A
T
M
E
G
A
V
M
L
A
R
I
L
E
T
A
T
P
L
E
H
A
Y
T
H
L
A
T
Y
I
---
28
HHSearch
68.87
17%
-137
- C1 -
-
3QBM
4
?
B:
[3-192]
-----------------------
R
K
G
Q
E
T
R
E
R
V
V
A
Q
A
A
A
L
F
N
V
S
G
Y
A
G
T
A
I
S
D
I
M
A
A
T
G
L
E
K
G
G
I
Y
R
H
F
E
S
K
E
Q
L
A
L
A
A
F
D
Y
A
A
E
K
V
R
E
R
F
A
V
G
L
A
-
G
-
H
K
H
T
V
D
T
I
I
A
F
--
L
D
V
F
R
S
Y
A
E
R
P
P
L
V
G
G
C
P
I
L
N
T
A
I
E
S
D
D
T
N
P
M
L
-------
R
E
R
V
R
A
V
I
D
E
W
R
E
T
I
R
T
L
V
Q
T
G
I
A
R
G
E
I
R
P
E
V
D
A
D
R
L
A
L
L
I
I
A
T
M
E
G
A
V
M
L
A
R
I
L
E
T
A
T
P
L
E
H
A
Y
T
H
L
A
T
Y
I
---
34
HHSearch
67.53
13%
-132
- C1 -
-
3KZ9
-
?
B:
[5-198]
---------------
I
A
K
R
P
R
T
R
L
S
P
L
K
R
K
Q
Q
L
M
E
I
A
L
E
V
F
A
R
R
G
I
G
R
G
G
H
A
D
I
A
E
I
A
Q
V
S
V
A
T
V
F
N
Y
F
P
T
R
E
D
L
V
D
E
V
L
N
H
V
V
R
Q
F
S
N
F
L
S
D
N
I
D
-
L
-
D
L
H
A
K
E
N
I
A
N
I
--
T
N
A
M
I
E
L
V
V
Q
D
N
-
H
W
L
K
V
W
F
E
W
---
S
A
S
T
R
D
E
V
-------
W
P
L
F
V
T
T
N
R
T
N
Q
L
L
V
Q
N
M
F
I
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A
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V
C
D
Q
H
N
P
E
D
L
A
N
L
F
H
G
I
C
Y
S
L
F
V
Q
A
N
R
T
N
N
T
A
E
L
S
K
L
V
S
S
Y
L
D
M
L
---
35
HHSearch
66.38
13%
-144
- C1 -
-
3KZ9
-
?
D:
[6-198]
----------------
A
K
R
P
R
T
R
L
S
P
L
K
R
K
Q
Q
L
M
E
I
A
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A
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G
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H
A
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D
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A
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H
W
L
K
V
W
F
E
W
---
S
A
S
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R
D
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-------
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P
L
F
V
T
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T
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Q
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Q
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M
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A
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G
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F
V
Q
A
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R
T
N
N
T
A
E
L
S
K
L
V
S
S
Y
L
D
M
L
---
39
HHSearch
62.75
14%
-137
- C1 -
-
3WHC
2
FADR_BACSU
E:
[4-185]
-------------------------
K
R
P
K
Y
M
Q
I
I
D
A
A
V
E
V
I
A
E
N
G
Y
H
Q
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A
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M
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-
E
-
K
A
T
A
K
E
K
L
A
L
V
--
I
S
K
H
F
S
L
L
A
G
D
H
--
N
L
A
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V
T
--
Q
L
E
L
R
Q
S
N
L
E
L
-------
R
Q
K
I
N
E
I
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G
Y
L
N
I
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G
I
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A
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V
M
N
D
Q
K
Y
D
L
V
A
L
S
N
S
V
L
E
-----
23
HHSearch
62.04
16%
-115
- C1 -
-
2HYJ
-
?
A:
[8-197]
-----------------------
A
E
A
Q
A
T
R
G
R
I
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G
R
A
A
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W
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V
E
P
A
L
-
A
-
E
P
P
G
L
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R
L
R
A
V
--
C
A
N
S
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Y
L
E
E
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L
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G
G
C
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L
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A
A
L
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E
Y
D
G
R
P
G
R
V
-------
R
D
A
V
A
E
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W
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R
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Q
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R
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G
F
D
V
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A
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F
E
I
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A
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L
A
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A
A
M
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L
Q
H
D
R
T
A
A
D
R
A
R
R
A
I
E
R
A
L
---
2
PsiBlast_PDB
61.93
26%
-84
- C1 -
-
4AF5
1
ACNR_CORGL
A:
[16-180]
------------------------------
Q
E
I
L
E
G
A
R
R
C
F
A
E
H
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Y
E
G
A
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E
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S
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I
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D
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E
N
L
F
L
A
-----
L
A
R
E
D
A
----------
A
R
M
A
E
V
V
-
E
N
G
--
L
V
E
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M
R
G
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L
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E
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Y
D
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V
F
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A
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W
I
D
H
Q
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V
L
D
E
A
V
R
V
------
R
L
S
R
N
V
D
K
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M
R
T
D
V
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H
T
F
L
E
T
V
L
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F
I
S
R
L
A
T
G
A
S
T
E
G
L
S
E
V
L
D
---------
6
PsiBlast_PDB
60.40
20%
-110
- C1 -
-
2HYJ
-
?
A:
[16-175]
-------------------------------
R
I
L
G
R
A
A
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I
A
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E
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E
P
A
L
-
A
-
E
P
P
G
L
R
R
L
R
A
V
--
C
A
N
S
V
G
Y
L
E
E
P
L
L
P
G
G
C
L
L
T
A
A
L
S
E
Y
D
G
R
P
G
R
V
-------
R
D
A
V
A
E
V
W
S
R
W
R
E
Q
L
R
A
D
L
T
A
A
V
D
K
G
E
L
P
A
G
F
D
V
E
Q
A
--
L
F
E
I
V
A
A
G
L
A
L
N
A
-----------------------
5
PsiBlast_PDB
60.37
30%
-107
- C1 -
-
3VPR
-
?
A:
[7-137]
-------------------------------
R
I
L
E
E
A
A
K
L
F
T
E
K
G
Y
E
A
T
S
V
Q
D
L
A
Q
A
L
G
L
S
K
A
A
L
Y
H
H
F
G
S
K
E
E
I
L
Y
E
I
S
L
L
A
L
K
G
L
V
A
A
G
E
K
A
-
L
-
E
-
V
A
D
P
K
E
A
L
R
R
F
--
M
E
A
H
A
-
R
Y
F
E
E
N
Y
P
---
F
F
V
T
M
L
Q
G
I
K
S
L
S
P
E
N
-------
R
L
K
T
I
A
L
R
D
R
H
E
E
N
L
R
A
I
L
R
R
G
V
E
Q
G
-------------------------------------------------
31
HHSearch
59.78
17%
-110
- C1 -
-
3EUP
-
?
B:
[4-182]
--------------------
K
E
L
S
K
S
D
R
T
R
Q
F
I
I
E
S
T
A
P
V
F
N
V
K
G
L
A
G
T
S
L
T
D
L
T
E
A
T
N
L
T
K
G
S
I
Y
G
N
F
E
N
K
E
A
V
A
I
A
A
F
D
Y
N
W
G
H
V
K
S
V
L
T
A
K
V
Q
-
A
-
C
N
T
Y
K
E
M
L
L
V
Y
--
S
S
M
Y
N
D
A
D
G
S
L
F
P
V
G
G
C
P
L
L
N
T
T
I
E
A
D
D
T
H
D
A
L
-------
R
K
K
A
G
E
A
I
L
S
W
K
K
N
L
V
T
I
I
K
K
G
I
Q
A
K
E
F
R
P
D
T
D
V
T
K
I
A
F
S
M
I
A
L
V
E
G
A
I
L
I
H
R
A
T
K
N
R
-----------------
12
PsiBlast_PDB
59.55
18%
-49
- C1 -
-
3EUP
-
?
A:
[14-177]
------------------------------
Q
F
I
I
E
S
T
A
P
V
F
N
V
K
G
L
A
G
T
S
L
T
D
L
T
E
A
T
N
L
T
K
G
S
I
Y
G
N
F
E
N
K
E
A
V
A
I
A
A
F
D
Y
N
W
G
H
V
K
S
V
L
T
A
K
V
Q
-
A
-
C
N
T
Y
K
E
M
L
L
V
Y
S
S
M
Y
N
D
A
D
G
S
L
F
P
--
V
G
G
C
P
L
L
N
T
T
I
E
A
D
D
T
H
D
A
L
-------
R
K
K
A
G
E
A
I
L
S
W
K
K
N
L
V
T
I
I
K
K
G
I
Q
A
K
E
F
R
P
D
T
D
V
T
K
I
A
F
S
M
I
A
L
V
E
G
A
I
L
I
H
R
----------------------
32
HHSearch
58.93
17%
-100
- C1 -
-
3EUP
-
?
A:
[4-182]
--------------------
K
E
L
S
K
S
D
R
T
R
Q
F
I
I
E
S
T
A
P
V
F
N
V
K
G
L
A
G
T
S
L
T
D
L
T
E
A
T
N
L
T
K
G
S
I
Y
G
N
F
E
N
K
E
A
V
A
I
A
A
F
D
Y
N
W
G
H
V
K
S
V
L
T
A
K
V
Q
-
A
-
C
N
T
Y
K
E
M
L
L
V
Y
--
S
S
M
Y
N
D
A
D
G
S
L
F
P
V
G
G
C
P
L
L
N
T
T
I
E
A
D
D
T
H
D
A
L
-------
R
K
K
A
G
E
A
I
L
S
W
K
K
N
L
V
T
I
I
K
K
G
I
Q
A
K
E
F
R
P
D
T
D
V
T
K
I
A
F
S
M
I
A
L
V
E
G
A
I
L
I
H
R
A
T
K
N
R
-----------------
30
HHSearch
58.82
13%
-143
- C1 -
-
3KNW
-
?
A:
[12-200]
-------------------------
S
E
A
K
R
Q
H
I
L
D
S
G
F
H
L
V
L
R
K
G
F
V
G
V
G
L
Q
E
I
L
K
T
S
G
V
P
K
G
S
F
Y
H
Y
F
E
S
K
E
A
F
G
C
E
L
L
K
H
Y
I
S
D
Y
Q
I
R
L
N
Q
L
W
T
-
T
-
E
T
S
A
R
D
K
L
M
N
Y
--
L
Q
C
W
V
K
D
-------
E
S
C
L
I
V
K
M
A
A
E
V
A
D
L
S
E
D
M
-------
R
L
I
M
N
D
G
V
K
R
L
I
A
R
M
A
D
L
I
R
I
G
Q
Q
E
G
S
I
Q
T
S
V
V
P
D
V
L
A
Q
V
I
Y
Q
M
Y
L
G
A
A
L
L
S
K
L
Y
K
H
K
A
P
L
F
Q
A
L
E
S
T
K
M
M
L
---
27
HHSearch
57.89
16%
-
- C1 -
-
4YZE
-
NEMR_ECOLI
A:
[7-194]
--------------------------
H
D
T
R
E
H
L
L
A
T
G
E
Q
L
S
L
Q
R
G
F
T
G
M
G
L
S
E
L
L
K
T
A
E
V
P
K
G
S
F
Y
H
Y
F
R
S
K
E
A
F
G
V
A
M
L
E
R
H
Y
A
A
Y
H
Q
R
L
T
E
L
L
Q
-
S
G
E
G
N
Y
R
D
R
I
L
A
Y
--
Y
Q
Q
T
L
N
Q
F
S
Q
H
G
T
I
S
G
C
L
T
V
K
L
S
A
E
V
S
D
L
S
E
D
M
-------
R
S
A
M
D
K
G
A
R
G
V
I
A
L
L
S
Q
A
L
E
N
G
R
E
N
H
S
L
T
F
S
G
E
P
L
Q
Q
A
Q
V
L
Y
A
L
W
L
G
A
N
L
Q
A
K
I
S
R
S
F
E
P
L
E
N
A
L
A
H
V
K
N
I
I
---
33
HHSearch
57.74
15%
-76
- C1 -
-
4L62
-
?
H:
[2-189]
-------------------------
Y
D
D
T
R
Q
H
L
L
D
T
G
Y
R
I
M
A
V
K
G
F
S
G
V
G
L
N
E
I
L
Q
S
A
G
V
P
K
G
S
F
Y
H
Y
F
K
S
K
E
Q
F
G
Q
A
L
L
E
D
Y
F
R
V
Y
L
A
D
M
D
Q
R
F
S
A
P
-
G
L
N
A
R
E
R
L
M
S
Y
--
W
Q
K
W
L
D
N
A
C
P
P
C
D
E
Q
R
C
L
V
V
K
L
S
A
E
V
A
D
L
S
E
S
M
-------
R
I
T
L
R
D
G
S
D
G
I
I
E
R
L
V
G
C
L
G
Q
G
R
D
D
G
S
L
A
P
-
C
D
A
R
H
M
A
S
A
L
Y
Q
L
W
L
G
A
S
L
L
S
K
L
H
R
S
P
G
P
L
E
T
A
M
Q
T
T
R
S
L
L
---
38
HHSearch
56.89
13%
-73
- C- -
-
3BRU
-
ACUR_RHOS4
A:
[24-211]
------------------------
D
A
S
L
A
H
Q
S
L
I
R
A
G
L
E
H
L
T
E
K
G
Y
S
S
V
G
V
D
E
I
L
K
A
A
R
V
P
K
G
S
F
Y
H
Y
F
R
N
K
A
D
F
G
L
A
L
I
E
A
Y
D
T
Y
F
A
R
L
L
D
Q
A
F
L
-
D
G
S
L
A
P
L
A
R
L
R
L
F
--
T
R
M
A
E
E
G
M
A
R
H
G
F
R
R
G
C
L
V
G
N
L
G
Q
E
M
G
A
L
P
D
D
F
-------
R
A
A
L
I
G
V
L
E
T
W
Q
R
R
T
A
Q
L
F
R
E
A
Q
A
C
G
E
L
S
A
D
H
D
P
D
A
L
A
E
A
F
W
I
G
W
E
G
A
I
L
R
A
K
L
E
L
R
P
D
P
L
H
S
F
T
R
T
F
G
R
-----