@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VNL9: (2017-11-17 )
MVFRSGLLLACAAVFLQIAVFLQPLLPKQYQIAPVCETITRALLKPKAQTEAMSHAMHHTHHQHHIEQAQVPDHHDHHDANHQCQYCTVYANLVLPPEFGVKEVLVRIQVRLVAYQQAFRHVYFALQRLFLLPQGRAPPLFA
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------.-.....-.--..10.-...---------..----..20....-.-...30........40-----------....-.---------..-..50........60.......---------------------------.70.-.......80--.........90....----....----100.......110-----......-----..120......-.130....----....140--------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------M-VFRS
G
-
L
--
L
L
A
C
A
-
A
V
F
---------
L
Q
----
I
A
V
F
L
Q
P
L-L-PKQYQI
A
P
V
C
E
T
I
T
------------
R
A
L
L-K---------PK-
A
Q
T
E
A
M
S
H
A
M
H
H
T
H
H
Q
H
H
I
E
Q
---------------------------AQVP-DHHDHHDA---NHQ
C
Q
Y
C
T
V
Y
A
N
LVL----PPEF----
G
V
K
E
V
L
V
R
I
Q
V
R
------
L
V
A
Y
Q
Q
-----
A
F
R
H
V
Y
F
A
L
Q
R
-
L
F
-LLPQG----RAPPLFA--------------------------------------------------------------------------------------------------------------------------
17
Fugue
81.66
19%
-
- C4 -
-
4WGV
-
?
A:
[45-439]
VGYMD
P
G
N
W
I
T
S
M
Q
G
G
A
Q
YGYTL
L
F
V
I
L
I
S
S
L
A
A
M
L
L
Q
S
M
T
V
R
L
G
I
A
T
GKD
L
A
Q
M
T
R
H
F
L
S
K
P
V
A
I
I
F
W
I
I
A
E
L
A
I
I
A
T
D
I
A
E
V
I
G
S
A
I
A
L
D
L
I
FGIP
L
I
V
G
A
L
I
T
V
F
D
V
F
L
L
L
F
I
M
R
F
G
F
R
K
I
E
-
A
I
V
G
T
-
L
--
I
F
T
V
L
-
A
I
F
---------
V
F
----
E
V
F
I
S
S
P
Q
-
L
-
T
D
I
L
N
G
F
V
P
H
K
E
I
V
TN----------
Q
G
I
L
-
Y
---------
I
A
-
L
G
I
I
G
A
T
I
M
P
H
N
L
Y
L
H
S
S
I
V
Q
---------------------------
S
R
K
Y
-
D
R
H
D
N
E
E
K
---
A
Q
A
I
K
Y
A
T
I
D
S
N
L
Q
L
----
S
I
A
F
----
V
V
N
C
L
L
L
T
L
G
A
A
------
L
F
F
G
T
K
TNDLG
G
F
Y
D
L
Y
H
A
L
K
T
-
E
P
-
V
L
G
A
T
----
L
G
G
V
M
S
T
L
F
A
V
A
L
L
A
S
G
Q
N
S
T
I
T
G
T
L
A
G
Q
I
V
M
E
G
FLR
L
S
I
P
N
W
L
R
R
L
I
T
R
S
L
A
V
I
P
V
I
I
C
L
I
I
F
KGN
S
E
K
I
E
Q
L
L
V
F
S
Q
V
F
L
S
I
A
L
P
F
S
L
I
P
L
Q
L
A
T
S
N
KKLMGPFI
N
K
T
W
V
N
I
I
S
W
T
L
I
V
I
L
S
G
L
N
V
Y
26
Fugue
65.98
15%
-138
- C5 -
-
5KPE
-
?
A:
[1-120]
-------------------------------------------------------------------------------------------------------------------------------
M
Q
D
I
-
V
--
E
A
A
K
Q
-
A
A
I
---------
A
I
----
F
Q
L
W
K
N
P
---------
T
D
P
E
A
Q
E
L
L
------------
N
K
I
L
-
S
---------
P
D
-
V
L
D
Q
V
R
E
H
A
R
E
L
Q
K
Q
G
I
H
F
E
V
---------------------------
K
R
V
E
-
V
T
T
D
G
N
T
V
---
N
V
T
V
E
L
E
E
T
T
-----------------
G
G
T
T
T
N
T
T
Y
E
L
R
------
F
E
V
D
G
D
-----
T
I
R
R
V
T
V
T
Q
N
G
-
G
S
-
L
E
H
H
H
----
H
H
H
------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
55.89
27%
-
- C4 -
-
4WGV
-
?
A:
[228-282]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
N
L
Y
L
H
S
S
I
V
Q
---------------------------
S
R
K
Y
-
D
R
H
D
N
E
E
K
---
A
Q
A
I
K
Y
A
T
I
D
S
N
L
Q
L
----
S
I
A
F
----
V
V
N
C
L
L
L
T
L
G
A
A
------
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
55.77
37%
-62
- C4 -
-
1QUU
-
A:
[35-97]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
L
-
L
-
Q
K
D
Y
E
S
A
S
L
T
E
V
--------------
R
A
L
L
-
R
---------
K
H
-
E
A
F
E
S
D
L
A
A
-----
H
Q
D
R
V
E
Q
I
A
A
I
-----------------------
A
Q
E
L
-
N
E
L
D
Y
H
D
A
V
N
V
N
D
R
C
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
55.75
37%
-55
- C4 -
-
1HCI
-
ACTN2_HUMAN
A:
[422-484]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
L
-
L
-
Q
K
D
Y
E
S
A
S
L
T
E
V
--------------
R
A
L
L
-
R
---------
K
H
-
E
A
F
E
S
D
L
A
A
-----
H
Q
D
R
V
E
Q
I
A
A
I
-----------------------
A
Q
E
L
-
N
E
L
D
Y
H
D
A
V
N
V
N
D
R
C
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
55.33
12%
-111
- C4 -
-
1TU9
4
?
A:
[4-134]
-------------------------------------------------------------------------------------------------------------------------------
N
A
A
D
-
R
--
V
M
Q
S
Y
-
G
R
C
---------
C
A
STG
F
F
D
D
F
Y
R
H
F
-
L
-
A
S
S
P
Q
I
R
A
K
F
A
T
T
D
------------
M
T
A
Q
-
K
---------
H
L
-
L
R
A
G
I
M
N
L
V
M
Y
A
R
G
M
S
D
S
K
L
R
---------------------------
A
L
G
A
-
S
H
S
R
A
A
L
D
---
I
R
P
E
L
Y
D
L
W
L
D
A
L
L
M
----
A
V
A
E
----
H
D
R
D
C
D
-------------
A
E
T
R
D
-----
A
W
R
D
V
M
G
R
G
I
A
-
V
I
-
K
S
Y
Y
G
----
S
--------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
54.07
37%
-
- C4 -
-
4D1E
-
ACTN2_HUMAN
A:
[422-486]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
L
-
L
-
Q
K
D
Y
E
S
A
S
L
T
E
V
--------------
R
A
L
L
-
R
----------
H
-
E
A
F
E
S
D
L
A
A
-----
H
Q
D
R
V
E
Q
I
A
A
I
-----------------------
A
Q
E
L
-
N
E
L
D
Y
H
D
A
V
N
V
N
D
R
C
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
52.37
20%
-84
- C5 -
-
5KXF
-
A:
[30-156]
------------------------------------------------------------------------------------------------------------------------H
I
W
R
G
M
I
A
K
G
G
-
T
--
P
V
C
C
A
-
R
C
V
P
METKLPEV
V
N
----
C
S
A
R
T
D
L
N
M
L
-
A
K
H
Y
A
V
A
I
G
C
E
-
I
V
------------
F
F
V
P
-
D
---------
R
E
-
E
D
F
A
S
Y
T
E
F
L
R
Y
L
S
S
K
D
R
A
G
V
---------------------------
A
K
L
D
-
D
G
T
-----------------
T
L
F
L
V
P
----
P
S
D
F
----
L
T
D
V
L
Q
V
T
R
Q
----------------------------
E
R
-
L
Y
-
G
V
V
L
K
----
L
P
P
P
A
----------------------------------------------------------------------------------------------------------------------------
20
Fugue
52.14
19%
-44
- C4 -
-
5AZB
11
LGT_ECOLI
A:
[4-287]
-----------SSYLHFPEFDPVIFSIGP
V
A
L
H
W
Y
G
L
M
Y
L
V
G
F
I
F
A
M
W
L
A
T
R
R
A
N
RPGSGWT
K
N
E
V
E
N
L
L
Y
A
G
F
L
G
V
F
L
G
G
R
I
G
Y
V
L
FYN
F
P
Q
F
M
A
DPLYLFRVWDG
G
M
S
F
H
G
G
L
I
G
V
I
V
V
M
I
I
F
-
A
R
R
T
K
----------
R
S
F
---------
F
Q
----
V
S
D
F
I
A
P
L
-
I
-
P
F
G
L
G
A
G
R
L
G
N
F
I
N
GELWGRVDPNFP
F
A
M
L
-
F
---------
P
G
-
S
R
T
E
D
I
L
L
L
Q
T
N
P
Q
W
Q
S
I
F
D
T
---------------------------
Y
G
V
L
-
P
R
H
P
S
Q
L
Y
---
E
L
L
L
E
G
V
V
L
F
I
I
L
N
L
Y
I
RK
P
R
P
M
----
G
A
V
S
G
L
F
L
I
G
Y
G
------
A
F
R
I
I
V
-----
E
F
-----------
F
-
R
Q
P
D
A
----
Q
F
T
G
A
W
V
Q
Y
I
S
M
G
Q
I
L
S
I
P
M
I
V
A
G
V
I
M
M
V
W
A
Y
R
R
S
P---------------------------------------------------------------------------------------------
27
HHSearch
48.65
63%
-248
- C4 -
-
2K1K
-
EPHA1_HUMAN
A:
[553-568]
---------------------------------------------------------------------------------------------------------------------------------
F
G
-
L
--
L
L
G
-
A
-
A
L
L
---------
L
G
----
I
L
V
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
47.50
29%
-157
- C4 -
-
3P0X
2
?
A:
[258-305]
-----------------------------------------------------------------------------------------------------------------------------------------------
F
---------
Y
Q
----
V
K
N
G
I
E
P
C
-
I
-
A
R
A
I
A
Y
A
P
Y
C
D
L
I
W
------------
M
E
T
S
-
K
---------
P
D
L
A
Q
A
R
R
F
A
E
A
V
H
K
A
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
46.25
29%
-175
- C4 -
-
3EOL
1
?
A:
[258-313]
-----------------------------------------------------------------------------------------------------------------------------------------------
F
---------
Y
Q
----
V
K
N
G
I
E
P
C
-
I
-
A
R
A
I
A
Y
A
P
Y
C
D
L
I
W
------------
M
E
T
S
-
K
---------
P
D
L
A
Q
A
R
R
F
A
E
A
V
H
K
A
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
45.94
29%
-165
- C4 -
-
3OQ8
-
?
A:
[258-305]
-----------------------------------------------------------------------------------------------------------------------------------------------
F
---------
Y
Q
----
V
K
N
G
I
E
P
C
-
I
-
A
R
A
I
A
Y
A
P
Y
C
D
L
I
W
------------
M
E
T
S
-
K
---------
P
D
L
A
Q
A
R
R
F
A
E
A
V
H
K
A
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
45.89
26%
-240
- C5 -
-
2QDL
2
?
A:
[3-36]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
H
H
H
H
H
P
M
---
P
K
K
I
V
V
F
S
L
A
E
E
L
Y
G
----
L
D
I
F
----
D
V
H
E
V
V
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
45.60
11%
-28
- C6 -
-
4Q6V
-
LPOB_SALTY
A:
[77-211]
----------------------------------------------------------------------------------------------------------------------------
Y
-
D
W
N
G
A
M
Q
--
P
L
V
S
K
M
L
Q
A
---------
D
G
----
V
T
---------
A
G
S
V
L
L
V
D
S
V
N
N
R
T
------------
N
G
S
L
-
N
---------
A
N
-
E
A
T
E
T
L
R
N
A
L
A
N
N
G
K
F
T
L
V
S
V
---------------------------
Q
Q
L
S
M
A
K
Q
Q
L
G
L
S
---
P
Q
D
----------
S
L
----
G
T
R
S
----
K
A
I
G
I
A
R
N
V
G
A
Q
------
Y
V
L
Y
S
S
-----
A
S
G
N
V
N
A
P
A
L
Q
M
Q
L
M
L
V
Q
T
G
----
E
I
I
W
S
G
K
G
A
V
Q
Q---------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
45.21
29%
-168
- C4 -
-
3E5B
-
?
A:
[254-301]
-----------------------------------------------------------------------------------------------------------------------------------------------
F
---------
Y
Q
----
V
K
N
G
I
E
P
C
-
I
-
A
R
A
I
A
Y
A
P
Y
C
D
L
I
W
------------
M
E
T
S
-
K
---------
P
D
L
A
Q
A
R
R
F
A
E
A
V
H
K
A
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
45.07
41%
-170
- C4 -
-
1SMT
-
SMTB_SYNE7
A:
[65-103]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
----
A
Q
A
I
----
G
V
S
E
S
A
V
S
H
Q
L
R
S
L
R
N
L
R
L
V
S
Y
R
K
-----
Q
G
R
H
V
Y
Y
Q
L
Q
-----------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
45.02
41%
-161
- C4 -
-
1R1T
-
SMTB_SYNE7
A:
[65-103]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
----
A
Q
A
I
----
G
V
S
E
S
A
V
S
H
Q
L
R
S
L
R
N
L
R
L
V
S
Y
R
K
-----
Q
G
R
H
V
Y
Y
Q
L
Q
-----------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
43.64
41%
-163
- C4 -
-
1R23
-
SMTB_SYNE7
A:
[65-103]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
----
A
Q
A
I
----
G
V
S
E
S
A
V
S
H
Q
L
R
S
L
R
N
L
R
L
V
S
Y
R
K
-----
Q
G
R
H
V
Y
Y
Q
L
Q
-----------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
43.55
14%
46
- C- -
-
4RD8
-
?
A:
[9-218]
----------------------------------------------------------------------------------------------------------------------------
N
-
P
I
K
R
A
-
L
QG
E
L
L
Q
N
-
E
P
F
---------
I
Q
----
L
C
T
K
I
E
N
Y
-
L
M
D
-
T
E
A
V
N
E
Q
L
I
E
L
N
------------
E
Q
L
T
M
R
L
K
E
K
GLKPG
E
K
-
G
A
T
K
Q
L
R
T
L
I
Q
E
I
L
T
E
A
G
F
R
E
G
M
L
Q
T
IGNKPLA
A
A
D
F
M
F
L
V
S
S
G
F
M
L
K
D
S
S
L
-
R
A
S
S
H
G
E
L
---
T
H
A
I
Q
W
C
L
I
I
L
K
R
K
K
----
D
S
S
F
LENI
P
T
S
E
I
C
D
R
I
Y
K
K
------
L
G
H
Q
D
S
-----
S
N
P
N
Y
P
F
T
C
W
D
-
V
L
-
I
D
K
L
G
EIDS
R
S
P
E
W
L
S
D
H
I
Q
N
DEDQIF
P
V
L
R
E
V
I
K
N
R-----------------------------------------------------------------------------------------------------