@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VP18: (2017-11-19 )
MFLAEFNQAPPDQLKTLLNNCVHIPVWAEKIISERPYSSTSVLLGYAEQLSHTWSWQEIQAALATHPKIGERQAKKQLNAKEQNFSAQEQAGISLDEQTQQALLQGNIEYEQKFGFIFLIKAAGLSSDEILKKLHQRLQNNLAIEKVIVHEQLAAIALLRLSQEVQA
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10...-.....20-.-.......30........---.40........50-----------........60.--------.......-70......-----..80....-----....90.----------.-.-.---..---.-.100.......110--.........120.......-130.......---140.......150.-......-.160.....-------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MFLAEFNQA
P
P
D
Q
L
-
K
T
L
L
NNC-V-HI
P
V
W
A
E
K
-
I
I
SERPYS---S
T
S
V
L
L
G
Y
A
E
Q
L
S
-----------HTW
S
W
Q
E
I
Q
A
A
--------
L
ATHPKI-
G
E
R
Q
A
K
K
Q-----LNAKEQNF-----S
A
Q
E
Q
AG----------I-S-
L
---
D
E
---
Q
-
T
Q
Q
A
L
L
QGN
I
E
Y
----
E
Q
KF
G
F
I
F
L
I
K
AAGL
S
S
D
E
-
I
L
K
K
L
H
Q
R
L
Q
---NNL
A
I
E
K
V
I
V
H
-
E
Q
-
L
A
A
I
A
L
-
L
R
L
S
Q
E
VQA-------------
1
PsiBlast_PDB
76.54
40%
-58
- C3 -
-
3O7H
-
?
A:
[4-160]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
Q
F
N
S
L
S
K
D
E
A
-
A
G
L
L
A
P
C
-
V
-
A
L
P
A
W
G
E
T
-
L
V
S
L
R
P
F
A
---
S
R
H
A
L
L
Q
T
A
R
E
A
M
-----------
A
N
W
G
E
D
E
L
N
A
A
--------
L
S
A
H
P
R
I
-
G
E
K
P
T
G
S
Q
-----
A
H
A
A
---
L
-----
S
R
Q
E
Q
S
S
----------
V
D
S
-
E
---
N
E
---
R
-
L
A
Q
A
L
R
E
G
N
A
R
Y
----
E
A
R
F
G
R
V
F
L
I
R
A
K
G
R
S
G
E
E
-
I
L
Q
A
L
T
R
R
L
Q
---
H
T
A
D
E
E
V
A
E
A
L
-
A
Q
-
L
R
E
I
T
M
-
L
R
L
-------------------
3
PsiBlast_PDB
75.89
40%
-60
- C3 -
-
3O7J
1
?
A:
[27-183]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
Q
F
N
S
L
S
K
D
E
A
-
A
G
L
L
A
P
C
-
V
-
A
L
P
A
W
G
E
T
-
L
V
S
L
R
P
F
A
---
S
R
H
A
L
L
Q
T
A
R
E
A
M
-----------
A
N
W
G
E
D
E
L
N
A
A
--------
L
S
A
H
P
R
I
-
G
E
K
P
T
G
S
Q
-----
A
H
A
A
---
L
-----
S
R
Q
E
Q
S
S
----------
V
D
S
-
E
---
N
E
---
R
-
L
A
Q
A
L
R
E
G
N
A
R
Y
----
E
A
R
F
G
R
V
F
L
I
R
A
K
G
R
S
G
E
E
-
I
L
Q
A
L
T
R
R
L
Q
---
H
T
A
D
E
E
V
A
E
A
L
-
A
Q
-
L
R
E
I
T
M
-
L
R
L
-------------------
5
PsiBlast_PDB
75.18
40%
-156
- C3 -
-
5UOU
-
?
A:
[4-160]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
Q
F
N
S
L
S
K
D
E
A
-
A
G
L
L
A
P
C
-
V
-
A
L
P
A
W
G
E
T
-
L
V
S
L
R
P
F
A
---
S
R
H
A
L
L
Q
T
A
R
E
A
M
-----------
A
N
W
G
E
D
E
L
N
A
A
--------
L
S
A
H
P
R
I
-
G
E
K
P
T
G
---------------------------------------
S
-
E
---
N
E
---
R
-
L
A
Q
A
L
R
E
G
N
A
R
Y
----
E
A
R
F
G
R
V
F
L
I
R
A
K
G
R
S
G
E
E
-
I
L
Q
A
L
T
R
R
L
Q
---
H
T
A
D
E
E
V
A
E
A
L
-
A
Q
-
L
R
E
I
T
M
-
L
R
L
-------------------
31
HHSearch
73.43
39%
-106
- C3 -
-
5UOU
-
?
A:
[2-165]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
L
S
Q
F
N
S
L
S
K
D
E
A
-
A
G
L
L
A
P
C
-
V
-
A
L
P
A
W
G
E
T
-
L
V
S
L
R
P
F
A
---
S
R
H
A
L
L
Q
T
A
R
E
A
M
-----------
A
N
W
G
E
D
E
L
N
A
A
--------
L
S
A
H
P
R
I
-
G
E
K
P
T
G
-----------------------------------------
S
E
--
N
E
---
R
-
L
A
Q
A
L
R
E
G
N
A
R
Y
----
E
A
R
F
G
R
V
F
L
I
R
A
K
G
R
S
G
E
E
-
I
L
Q
A
L
T
R
R
L
Q
---
H
T
A
D
E
E
V
A
E
A
L
-
A
Q
-
L
R
E
I
T
M
-
L
R
L
E
G
A
I
G
--------------
4
PsiBlast_PDB
72.67
40%
-159
- C3 -
-
3O7K
-
?
A:
[4-160]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
Q
F
N
S
L
S
K
D
E
A
-
A
G
L
L
A
P
C
-
V
-
A
L
P
A
W
G
E
T
-
L
V
S
L
R
P
F
A
---
S
R
H
A
L
L
Q
T
A
R
E
A
M
-----------
A
N
W
G
E
D
E
L
N
A
A
--------
L
S
A
----------------------------------------------------
E
---
N
E
---
R
-
L
A
Q
A
L
R
E
G
N
A
R
Y
----
E
A
R
F
G
R
V
F
L
I
R
A
K
G
R
S
G
E
E
-
I
L
Q
A
L
T
R
R
L
Q
---
H
T
A
D
E
E
V
A
E
A
L
-
A
Q
-
L
R
E
I
T
M
-
L
R
L
-------------------
2
PsiBlast_PDB
72.47
40%
-109
- C- -
-
3O7I
-
?
A:
[4-160]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
Q
F
N
S
L
S
K
D
E
A
-
A
G
L
L
A
P
C
-
V
-
A
L
P
A
W
G
E
T
-
L
V
S
L
R
P
F
A
---
S
R
H
A
L
L
Q
T
A
R
E
A
M
-----------
A
N
W
G
E
D
E
L
N
A
A
--------
L
S
A
H
P
R
I
-
G
E
K
P
T
---------------------------------------D
S
-
E
---
N
E
---
R
-
L
A
Q
A
L
R
E
G
N
A
R
Y
----
E
A
R
F
G
R
V
F
L
I
R
A
K
G
R
S
G
E
E
-
I
L
Q
A
L
T
R
R
L
Q
---
H
T
A
D
E
E
V
A
E
A
L
-
A
Q
-
L
R
E
I
T
M
-
L
R
L
-------------------
8
PsiBlast_PDB
62.43
26%
-68
- C3 -
-
2O73
1
URAD_DANRE
A:
[13-162]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
F
V
-
K
L
F
G
N
V
V
-
E
-
K
C
P
L
I
S
A
A
-
I
W
S
Y
R
P
F
K
---
D
L
A
D
I
E
A
R
I
S
E
F
I
-----------
H
S
L
P
D
S
G
K
E
G
I
--------
L
R
C
H
P
D
L
-
A
G
R
D
L
Q
S
G
-----
T
L
T
P
E
S
Q
------
E
E
Q
S
Q
A
G
----------
M
-
T
T
L
---
D
S
---
A
-
E
I
V
H
M
Y
R
L
N
S
E
Y
----
K
E
R
F
G
F
P
F
V
I
C
A
R
L
N
N
K
A
D
-
I
V
R
Q
L
S
E
R
L
K
---
N
R
R
T
A
E
L
E
C
A
I
-
E
E
-
V
K
K
I
C
S
-
L
R
L
-------------------
7
PsiBlast_PDB
62.31
26%
-66
- C3 -
-
2O70
-
URAD_DANRE
A:
[13-162]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
F
V
-
K
L
F
G
N
V
V
-
E
-
K
C
P
L
I
S
A
A
-
I
W
S
Y
R
P
F
K
---
D
L
A
D
I
E
A
R
I
S
E
F
I
-----------
H
S
L
P
D
S
G
K
E
G
I
--------
L
R
C
H
P
D
L
-
A
G
R
D
L
Q
S
G
-----
T
L
T
P
E
S
Q
------
E
E
Q
S
Q
A
G
----------
M
-
T
T
L
---
D
S
---
A
-
E
I
V
H
M
Y
R
L
N
S
E
Y
----
K
E
R
F
G
F
P
F
V
I
C
A
R
L
N
N
K
A
D
-
I
V
R
Q
L
S
E
R
L
K
---
N
R
R
T
A
E
L
E
C
A
I
-
E
E
-
V
K
K
I
C
S
-
L
R
L
-------------------
9
PsiBlast_PDB
61.57
26%
-68
- C3 -
-
2O74
1
URAD_DANRE
A:
[13-162]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
F
V
-
K
L
F
G
N
V
V
-
E
-
K
C
P
L
I
S
A
A
-
I
W
S
Y
R
P
F
K
---
D
L
A
D
I
E
A
R
I
S
E
F
I
-----------
H
S
L
P
D
S
G
K
E
G
I
--------
L
R
C
H
P
D
L
-
A
G
R
D
L
Q
S
G
-----
T
L
T
P
E
S
Q
------
E
E
Q
S
Q
A
G
----------
M
-
T
T
L
---
D
S
---
A
-
E
I
V
H
M
Y
R
L
N
S
E
Y
----
K
E
R
F
G
F
P
F
V
I
C
A
R
L
N
N
K
A
D
-
I
V
R
Q
L
S
E
R
L
K
---
N
R
R
T
A
E
L
E
C
A
I
-
E
E
-
V
K
K
I
C
S
-
L
R
L
-------------------
33
HHSearch
61.23
24%
8
- C3 -
-
2O74
1
URAD_DANRE
F:
[1-167]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
I
N
V
V
N
A
L
A
Y
E
D
F
-
V
K
L
F
G
N
V
V
E
-
K
C
P
L
I
S
A
A
-
I
W
S
Y
R
P
F
K
---
D
L
A
D
I
E
A
R
I
S
E
F
I
-----------
H
S
L
P
D
S
G
K
E
G
I
--------
L
R
C
H
P
D
L
-
A
G
R
D
L
Q
S
G
-----
T
---
L
T
P
E
-----
S
Q
E
E
Q
S
Q
----------
A
-
G
-
M
TTL
D
S
---
A
-
E
I
V
H
M
Y
R
L
N
S
E
Y
----
K
E
R
F
G
F
P
F
V
I
C
A
R
L
N
N
K
A
D
-
I
V
R
Q
L
S
E
R
L
K
---
N
R
R
T
A
E
L
E
C
A
I
-
E
E
-
V
K
K
I
C
S
-
L
R
L
H
S
I
V
L
--------------
21
Fugue
59.89
25%
49
- C3 -
-
2O73
1
URAD_DANRE
A:
[2-166]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
N
V
V
N
A
L
A
Y
E
D
F
-
V
K
L
F
G
N
V
-
V
E
K
C
P
L
I
S
A
A
-
I
W
S
Y
R
P
F
K
---
D
L
A
D
I
E
A
R
I
S
E
F
I
-----------
H
S
L
P
D
S
G
K
E
G
I
--------
L
R
C
H
P
D
L
-
A
G
R
D
L
Q
S
G
------
T
L
T
P
E
S
Q
-----
E
E
Q
S
Q
A
G
----------
M
-
T
T
L
---
D
S
---
A
-
E
I
V
H
M
Y
R
L
N
S
E
Y
----
K
E
R
F
G
F
P
F
V
I
C
A
R
L
N
N
K
A
D
-
I
V
R
Q
L
S
E
R
L
K
---
N
R
R
T
A
E
L
E
C
A
I
-
E
E
-
V
K
K
I
C
S
-
L
R
L
H
S
I
V
---------------
32
HHSearch
59.40
24%
7
- C3 -
-
2O73
1
URAD_DANRE
B:
[2-165]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
N
V
V
N
A
L
A
Y
E
D
F
-
V
K
L
F
G
N
V
V
E
-
K
C
P
L
I
S
A
A
-
I
W
S
Y
R
P
F
K
---
D
L
A
D
I
E
A
R
I
S
E
F
I
-----------
H
S
L
P
D
S
G
K
E
G
I
--------
L
R
C
H
P
D
L
-
A
G
R
D
L
Q
S
G
-----
T
---
L
T
P
E
-----
S
Q
E
E
Q
S
Q
----------
A
-
G
-
M
TTL
D
S
---
A
-
E
I
V
H
M
Y
R
L
N
S
E
Y
----
K
E
R
F
G
F
P
F
V
I
C
A
R
L
N
N
K
A
D
-
I
V
R
Q
L
S
E
R
L
K
---
N
R
R
T
A
E
L
E
C
A
I
-
E
E
-
V
K
K
I
C
S
-
L
R
L
H
S
I
----------------
34
HHSearch
56.07
23%
7
- C3 -
-
2Q37
1
TTHL_ARATH
A:
[26-179]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
E
D
E
W
K
V
C
-
C
-
G
S
S
E
F
A
K
Q
-
M
S
T
S
G
P
L
T
---
S
Q
E
A
I
Y
T
A
R
D
I
W
F
-----------
N
Q
V
N
V
T
D
W
L
E
A
--------
F
S
A
H
P
Q
I
-
G
N
T
P
------------------------
S
E
Q
S
T
----------
A
-
F
-
A
T
T-
S
A
---
S
-
A
L
Q
E
L
A
E
W
N
V
L
Y
----
K
K
K
F
G
F
I
F
I
I
C
A
S
G
R
T
H
A
E
-
M
L
H
A
L
K
E
R
Y
E
---
N
R
P
I
V
E
L
E
I
A
A
-
M
E
-
Q
M
K
I
T
E
-
L
R
M
A
K
L
F
S
--------------
23
Fugue
52.06
22%
1
- C3 -
-
2Q37
1
TTHL_ARATH
A:
[26-180]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
E
D
E
W
K
V
C
-
C
-
G
S
S
E
F
A
K
Q
M
S
-
T
S
G
P
L
T
---
S
Q
E
A
I
Y
T
A
R
D
I
W
F
-----------
N
Q
V
N
V
T
D
W
L
E
A
--------
F
S
A
H
P
Q
I
-
G
N
T
P
S
E
Q
S
-----
T
A
F
A
----------------------------
T
-
T
---
S
A
---
S
-
A
L
Q
E
L
A
E
W
N
V
L
Y
----
K
K
K
F
G
F
I
F
I
I
C
A
S
G
R
T
H
A
E
M
L
-
H
A
L
K
E
R
Y
E
---
N
R
P
I
V
E
L
E
I
A
A
M
E
Q
M
K
I
T
E
L
R
M
A
K
L
F
S
D
----------------
35
HHSearch
50.33
27%
9
- C- -
-
2O8I
-
?
A:
[2-163]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
R
E
E
F
V
A
R
F
G
G
V
F
-
E
-
H
S
P
F
I
A
E
R
-
A
Y
D
A
G
G
A
G
LEL
T
A
K
A
V
H
G
A
L
C
A
Q
F
-----------
R
V
A
S
E
A
E
R
L
G
V
--------
L
R
A
H
P
D
L
-
A
G
K
L
A
I
A
G
-----
E
---
L
T
--------------------------
G
-
L
DRL
S
P
---
Q
-
E
H
A
R
F
T
Q
L
N
S
A
Y
----
T
E
K
F
G
F
P
F
I
I
A
V
K
G
L
N
R
H
D
-
I
L
S
A
F
D
T
R
I
D
---
N
N
A
A
Q
E
F
A
T
A
T
-
G
Q
-
V
E
K
I
A
W
-
L
R
L
A
S
M
L
P
--------------
6
PsiBlast_PDB
48.37
31%
-10
- C- -
-
2O8I
-
?
A:
[20-159]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
A
E
R
A
Y
D
---
A
G
G
A
G
L
E
L
T
A
K
A
V
-----------
H
G
A
L
C
A
Q
F
R
V
A
S
E
A
E
R
L
G
V
L
R
A
H
P
D
L
A
G
K
L
A
I
A
G
E
-----
L
T
------------------------------
G
-
L
---
D
R
LS
P
Q
-
E
H
A
R
F
T
Q
L
N
S
A
Y
----
T
E
K
F
G
F
P
F
I
I
A
V
K
G
L
N
R
H
D
-
I
L
S
A
F
D
T
R
I
D
---
N
N
A
A
Q
E
F
A
T
A
T
-
G
Q
-
V
E
K
I
A
W
-
L
R
L
A
------------------
42
HHSearch
42.76
30%
-330
- C1 -
-
2JSP
-
A:
[47-56]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
Y
----
R
E
K
W
D
L
P
----------------------------------------------------------------------
24
Fugue
39.47
18%
83
- C3 -
-
5EC0
3
?
A:
[1-388]
MNIS
R
M
N
V
D
FGNSMY
M
N
L
I
DG
Y
F
F
E
L
P
T
N
V
V
E
I
S
K
E
A
A
E
GKF
T
S
I
V
E
DPADLKD
R
L
L
V
S
T
V
I
DE
T
E
R
Y
F
L
V
G
ELAEPELHNKVESH
I
P
Y
V
T
F
L
A
A
T
A
Y
Y
Q
A
L
KGKREDN
E
V
T
I
E
Y
F
Q
T
M
L
P
I
W
L
L
K
K
L
DK
F
S
E
M
Q
K
R
M
A
S
K
F
L
G
T
H
Q
V
K
V
LTLGL
E
K
E
L
T
I
K
V
E
D
A
A
C
R
I
E
SEVA
R
W
A
I
K
KNFDLEDKDYAEQFKNYD
V
V
F
C
DLGGG
T
D
D
L
V
L
L
P
A
G
L
K
P
P
K
S
R
-
D
S
F
V
S
N
T
-
A
-
P
F
L
A
H
L
E
K
-
L
R
K
E
K
L
----------------
L
E
-----------
H
F
D
S
V
R
E
L
E
K
F
--------
I
Y
S
N
--
I
-
G
K
T
K
M
E
R
R
-----
D
G
N
T
G
Q
K
F
-----
D
L
T
D
I
I
K
----------
K
-
S
-
L
---
K
E
---
Y
-
T
E
I
K
I
A
Q
A
E
N
T
F
PAPK
D
K
V
Y
K
Y
L
Y
F
G
G
V
G
E
V
L
E
E
S
-
I
S
V
V
T
E
E
R
Y
G
---
R
D
I
S
E
S
N
H
I
V
A
-
E
D
-
A
R
L
L
N
L
-
Y
G
L
E
V
L
S
R
A
E
Q
V
K
K
Q
A
N
E
K
E
AQ
30
Fugue
34.84
15%
-4
- C3 -
-
5M1H
-
A:
[1-180]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PIGTVIP
I
Q
H
I
R
S
V
T
G
E
P
P
R
N
P
-
R
E
---------
I
P
I
W
L
G
R
-
N
A
P
A
I
D
G
V
---
F
P
V
T
T
P
D
L
R
C
R
I
I
-----------
N
A
I
L
G
G
N
I
G
L
S
--------
L
T
P
G
D
C
L
-
T
W
D
S
A
V
A
T
-----
L
F
I
R
T
H
G
T
FPMHQ
L
G
N
V
I
K
G
----------
I
-
V
-
D
---
Q
E
---
G
-
V
A
T
A
Y
T
L
G
M
M
L
S
----
G
Q
N
Y
Q
L
V
S
G
I
I
R
G
Y
L
P
G
Q
A
-
V
V
T
A
L
Q
Q
R
L
D
QEI
D
D
Q
T
R
A
E
T
F
I
Q
-
H
L
-
N
A
V
Y
E
I
-
L
G
L
N
A
R
G
Q
S
IRLE---------
16
PsiBlast_PDB
32.71
23%
-
- C3 -
-
4K51
-
EIF3A_YEAST
A:
[278-400]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
A
N
Y
Y
E
N
L
V
K
V
F
F
V
S
GD
P
L
L
H
T
T
A
W
K
K
F
Y
K
L
--------
Y
S
T
N
P
R
A
-
T
E
E
E
F
K
T
Y
S
S
T
I
F
L
S
A
I
S
T
Q
L
-----
D
E
I
P
---YDPH
L
R
M
Y
R
L
L
-
N
-
L
---
D
A
---
K
P
T
R
K
E
M
L
Q
S
I
I
E
D
----
E
S
I
Y
G
K
V
----------
D
E
-
E
L
K
E
L
Y
D
I
I
E
---
V
N
F
D
V
D
T
V
------------------------------------