@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VP94: (2017-11-20 )
MIFEWMSDPSVWVGLATLIVLEIVLGIDNLVFIAILAEKLPPEQRTKARIVGLILALGMRLILLASIAWVVTLTQPLFHIFSHPFSGRDLILLFGGVFLLFKGTMELHERMEGKQLHKEDNPVHAAFWMVIVQIVVLDAVFSLDSVITAVGMVKELSVMMVAVVIAVGIMLWASRPLMDLVNKHPTVVILCLGFLMMIGFSLVVEGFGFHIPKGYLYAAIGFSILVEMINQTMRRNQEKLVTTTDLRYRTASAVLRMLGSKNSGSTADAQTADKEDVLATQAFADEVFDEENGAYHSVLVQGVLGLSERPVKSVMTPRPDLEWIDLDEEPEVLKERLMSMTHSRLIVARGELDNIEGIALTHKILNGFIETGVIYFQKHLREPVIVHENAQVLMVMEQLRQAPLQMAIVLNEYGSIEGIATPIDILEAIAGEFPDEDELDAAAESLEDGSLILEGSTDIRHVSLLLGRDLVDESEQYSTLSGYLLFHLGRLPENGETVEADGYRFEVVTMEGHKIEKVHIVSIEQGESKD
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370---....--...380--........390.......400.......410.......420.......430.......-440.--......450.......460.......470.-.......480.......490.......500.......510.......520.......530
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
M
I
F
EWMSD
P
S
V
W
V
G
L
A
T
L
I
V
L
E
I
V
LGI
D
N
L
V
F
I
A
I
L
A
E
KL
P
P
E
Q
R
T
K
A
R
I
V
G
L
I
L
A
L
G
M
R
L
I
L
L
A
S
I
A
W
V
V
T
L
T
Q
P
L
F
H
I
FSHPFSG
R
D
L
I
L
L
FG
G
V
F
L
L
F
K
G
T
M
E
L
H
E
R
MEG
K
Q
LHKEDN
P
V
H
A
A
F
W
M
V
I
V
Q
I
V
V
L
D
A
V
F
S
L
D
S
V
I
T
A
V
G
M
V
K
E
L
S
V
M
M
V
A
V
V
I
A
V
G
I
M
L
WASR
P
L
M
D
L
V
NKHPT
V
V
I
L
C
L
G
F
L
M
M
I
G
F
S
L
V
V
E
GFGFHIPK
G
Y
L
Y
A
A
I
G
F
S
I
L
V
E
M
I
N
Q
T
M
R
R
N
Q
E
KLVTTTD
L
R
Y
R
T
A
S
A
V
L
R
M
LGSKNSGSTADAQTA
D
K
E
D
V
L
A
T
Q
A
F
A
D
E
V
FDEEN
G
A
Y
H
S
V
L
V
Q
G
V
LGLSER
P
V
K
S
VMTPRPD
L
E
W
IDLDE
E
P
E
V
L
K
E
R
L
M
S
M
T
H
S
R
L
I
V
ARGELDNI
E
G
I
A
L
T
H
K
I
L
N
G
F
I
E
T
G
---
V
I
Y
F
--
Q
K
HLR---E
P
V
I
VHEN
A
Q
V
L
M
V
M
E
Q
L
R
QAP
L
Q
M
A
I
V
LNEYGSIEGIA
T
P
I
D
I
L
E
A
I
A
GEFP
D
E
D
E
L
-
D
A
A
A
--
E
SLEDG
S
L
I
L
EGSTD
I
R
H
V
S
L
L
LG
R
D
L-VD-ESEQY
S
T
L
S
G
Y
L
L
F
H
L
GRLPENG
E
T
VEAD
G
Y
R
F
E
V
V
TMEG
H
K
I
E
K
V
H
I
V
S
IEQGESKD
1
PsiBlast_PDB
81.13
41%
-160
- C2 -
-
3OCM
1
?
A:
[20-166]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
E
E
R
N
M
V
S
G
V
L
T
L
A
E
R
S
I
R
S
I
M
T
P
R
T
D
V
S
W
V
N
I
D
D
D
A
A
T
I
R
Q
Q
L
T
A
A
P
H
S
F
F
P
V
C
R
G
S
L
D
E
V
V
G
I
G
R
A
K
D
L
V
A
D
L
I
T
E
G
---
R
V
R
---
R
N
R
L
R
---
D
P
I
I
V
H
E
S
I
G
I
L
R
L
M
D
T
L
K
R
S
R
G
Q
L
V
L
V
A
D
E
F
G
A
I
E
G
L
V
T
P
I
D
V
F
E
A
I
A
G
E
F
P
D
E
D
E
L
P-----------------------------------------------------------------------------------------------
49
HHSearch
79.88
40%
-158
- C2 -
-
3OCM
1
?
A:
[18-165]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
G
V
E
E
----
R
N
M
V
S
G
V
L
T
L
A
E
R
S
I
R
S
I
M
T
P
R
T
D
V
S
W
V
N
I
D
D
D
A
A
T
I
R
Q
Q
L
T
A
A
P
H
S
F
F
P
V
C
R
G
S
L
D
E
V
V
G
I
G
R
A
K
D
L
V
A
D
L
I
T
E
----
G
R
V
R
--
R
N
R
L
R
---
D
P
I
I
V
H
E
S
I
G
I
L
R
L
M
D
T
L
K
R
S
R
G
Q
L
V
L
V
A
D
E
F
G
A
I
E
G
L
V
T
P
I
D
V
F
E
A
I
A
G
E
F
P
D
E
D
E
L
------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
79.65
28%
-52
- C2 -
-
4HG0
1
CORC_ECOLI
A:
[58-279]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
G
V
M
D
I
A
D
Q
R
V
R
D
I
M
I
P
R
S
Q
M
I
T
L
K
R
N
Q
T
L
D
E
C
L
D
V
I
I
E
S
A
H
S
R
F
P
V
I
S
E
D
K
D
H
I
E
G
I
-
L
M
A
K
D
L
L
P
F
M
R
S
D
---
A
E
A
F
SM
D
K
V
L
R
---
Q
A
V
V
V
P
E
S
K
R
V
D
R
M
L
K
E
F
R
S
Q
R
Y
H
M
A
I
V
I
D
E
F
G
G
V
S
G
L
V
T
I
E
D
I
L
E
L
I
V
G
E
I
E
D
E
Y
D
E
-
E
D
D
I
DF
R
Q
L
S
R
H
T
W
T
V
R
A
L
A
S
I
E
D
F
N
E
A
F
G
T
H
F
-
S
D
---
E
E
V
D
T
I
G
G
L
V
M
Q
A
F
G
H
L
P
A
R
G
E
T
I
D
I
D
G
Y
Q
F
K
V
A
M
A
D
S
R
R
I
I
Q
V
H
V
----------
48
HHSearch
67.79
30%
-153
- C2 -
-
3LV9
-
?
A:
[18-146]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
E
F
E
E
K
K
I
R
E
I
M
V
P
R
T
D
M
V
C
I
Y
E
S
D
S
E
E
K
I
L
A
I
L
K
E
E
G
V
T
R
Y
P
V
C
R
K
N
K
D
D
I
L
G
F
V
H
I
R
D
L
Y
N
Q
K
I
N
E
N
---
K
I
E
L
--
E
E
I
L
R
---
D
I
I
Y
I
S
E
N
L
T
I
D
K
A
L
E
R
I
R
K
E
K
L
Q
L
A
I
V
V
D
E
Y
G
G
T
S
G
V
V
T
I
E
D
I
L
E
E
I
V
G
E
-------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
66.86
30%
-153
- C2 -
-
3LV9
-
?
A:
[18-146]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
E
F
E
E
K
K
I
R
E
I
M
V
P
R
T
D
M
V
C
I
Y
E
S
D
S
E
E
K
I
L
A
I
L
K
E
E
G
V
T
R
Y
P
V
C
R
K
N
K
D
D
I
L
G
F
V
H
I
R
D
L
Y
N
Q
K
I
N
E
N
---
K
I
E
L
--
E
E
I
L
R
---
D
I
I
Y
I
S
E
N
L
T
I
D
K
A
L
E
R
I
R
K
E
K
L
Q
L
A
I
V
V
D
E
Y
G
G
T
S
G
V
V
T
I
E
D
I
L
E
E
I
V
G
E
-------------------------------------------------------------------------------------------------------
43
HHSearch
65.12
44%
-166
- C2 -
-
2P13
1
?
A:
[11-89]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Q
A
D
G
T
W
L
M
D
G
W
I
S
I
R
K
A
S
N
L
L
E
H
D
L
-
V
D
-
E
A
E
R
Y
S
T
L
G
G
Y
L
L
W
Q
F
G
Y
I
P
A
A
G
E
Q
I
T
V
D
G
L
I
F
E
I
V
S
V
N
K
H
N
I
G
K
V
R
V
H
R
T
-------
6
PsiBlast_PDB
64.49
28%
-174
- C2 -
-
3JTF
1
?
A:
[4-128]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
T
V
A
D
I
M
V
P
R
S
R
M
D
L
L
D
I
S
Q
P
L
P
Q
L
L
A
T
I
I
E
T
A
H
S
R
F
P
V
Y
E
D
D
R
D
N
I
I
G
I
L
L
A
K
D
L
L
R
Y
M
L
E
P
A
----
L
D
I
--
R
S
L
V
R
---
P
A
V
F
I
P
E
V
K
R
L
N
V
L
L
R
E
F
R
A
S
R
N
H
L
A
I
V
I
D
E
-
G
G
I
S
G
L
V
T
M
E
D
V
L
E
Q
I
V
G
D
I
------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
63.96
47%
-170
- C2 -
-
2P13
1
?
A:
[9-86]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
E
Q
Q
A
D
G
T
W
L
M
D
G
W
I
S
I
R
K
A
S
N
L
L
E
H
D
L
-
V
D
-
E
A
E
R
Y
S
T
L
G
G
Y
L
L
W
Q
F
G
Y
I
P
A
A
G
E
Q
I
T
V
D
G
L
I
F
E
I
V
S
V
N
K
H
N
I
G
K
V
R
V
----------
22
Fugue
63.70
44%
-158
- C2 -
-
2P13
1
?
A:
[5-89]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
-
K
V
V
A
--
E
Q
Q
A
D
G
T
W
L
M
D
G
W
I
S
I
R
K
A
S
N
L
L
E
H
D
L
-
V
D
-
E
A
E
R
Y
S
T
L
G
G
Y
L
L
W
Q
F
G
Y
I
P
A
A
G
E
Q
I
T
V
D
G
L
I
F
E
I
V
S
V
N
K
H
N
I
G
K
V
R
V
H
R
T
-------
5
PsiBlast_PDB
62.86
27%
-185
- C2 -
-
3LHH
1
?
A:
[43-167]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
S
S
L
M
V
P
R
S
D
I
V
F
L
D
L
N
L
P
L
D
A
N
L
R
T
V
M
Q
S
P
H
S
R
F
P
V
C
R
N
N
V
D
D
M
V
G
I
I
S
A
K
Q
L
L
S
E
S
I
A
G
E
---
R
L
E
L
--
V
D
L
V
K
---
N
C
N
F
V
P
N
S
L
S
G
M
E
L
L
E
H
F
R
T
T
G
S
Q
M
V
F
V
V
D
E
Y
G
D
L
K
G
L
V
T
L
Q
D
M
M
D
A
L
T
G
E
F
F
-----------------------------------------------------------------------------------------------------
31
HHSearch
62.53
26%
-185
- C2 -
-
3LHH
1
?
A:
[43-167]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
S
S
L
M
V
P
R
S
D
I
V
F
L
D
L
N
L
P
L
D
A
N
L
R
T
V
M
Q
S
P
H
S
R
F
P
V
C
R
N
N
V
D
D
M
V
G
I
I
S
A
K
Q
L
L
S
E
S
I
A
G
E
---
R
L
E
L
--
V
D
L
V
K
---
N
C
N
F
V
P
N
S
L
S
G
M
E
L
L
E
H
F
R
T
T
G
S
Q
M
V
F
V
V
D
E
Y
G
D
L
K
G
L
V
T
L
Q
D
M
M
D
A
L
T
G
E
F
F
-----------------------------------------------------------------------------------------------------
32
HHSearch
60.43
27%
-153
- C2 -
-
3OI8
4
?
A:
[4-156]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
A
E
D
V
L
N
L
L
R
Q
A
H
E
Q
E
V
F
D
A
D
T
----
L
L
R
L
E
K
V
L
D
F
S
D
L
E
V
R
D
A
M
I
T
R
S
R
M
N
V
L
K
E
N
D
S
I
E
R
I
T
A
Y
V
I
D
T
A
H
S
R
F
P
V
I
G
E
D
K
D
E
V
L
G
I
L
H
A
K
D
L
L
K
Y
M
F
N
P
E
---
Q
F
H
L
--
K
S
I
L
R
---
P
A
V
F
V
P
E
G
K
S
L
T
A
L
L
K
E
F
R
E
Q
R
N
H
M
A
I
V
I
D
E
Y
G
G
T
S
G
L
V
T
F
E
D
I
I
E
------------------------------------------------------------------------------------------------------------
42
HHSearch
58.20
44%
-152
- C2 -
-
2P13
-
?
B:
[11-89]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Q
A
D
G
T
W
L
M
D
G
W
I
S
I
R
K
A
S
N
L
L
E
H
D
L
-
V
---
A
E
R
Y
S
T
L
G
G
Y
L
L
W
Q
F
G
Y
I
P
A
A
G
E
Q
I
T
V
D
G
L
I
F
E
I
V
S
V
N
K
H
N
I
G
K
V
R
V
H
R
T
-------
41
HHSearch
56.43
23%
-174
- C2 -
-
2PLI
1
?
D:
[10-90]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
N
I
--
H
A
V
S
S
E
R
W
R
I
H
A
A
T
E
I
E
D
I
N
T
F
F
G
T
E
Y
-
S
---
S
E
E
A
D
T
I
G
G
L
V
I
Q
E
L
G
H
L
P
V
R
G
E
K
V
L
I
G
G
L
Q
F
T
V
A
R
A
D
N
R
R
L
H
T
L
M
A
T
R
V
-------
40
HHSearch
55.82
23%
-163
- C2 -
-
2PLI
-
?
A:
[8-90]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-
A
D
N
I
--
H
A
V
S
S
E
R
W
R
I
H
A
A
T
E
I
E
D
I
N
T
F
F
G
T
E
Y
-
S
---
S
E
E
A
D
T
I
G
G
L
V
I
Q
E
L
G
H
L
P
V
R
G
E
K
V
L
I
G
G
L
Q
F
T
V
A
R
A
D
N
R
R
L
H
T
L
M
A
T
R
V
-------
27
Fugue
54.48
23%
-82
- C2 -
-
3HF7
1
?
A:
[1-127]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
S
V
N
D
I
M
V
P
R
N
E
I
V
G
I
D
I
N
D
D
W
K
S
I
V
R
Q
L
T
H
S
P
H
G
R
I
V
L
Y
R
D
S
L
D
D
A
I
S
M
L
R
V
R
E
A
Y
R
L
M
T
E
K
K
EFT
K
E
I
M
--
L
R
A
A
D
---
E
I
Y
F
V
P
E
G
T
P
L
S
T
Q
L
V
K
F
Q
R
N
K
K
K
V
G
L
V
V
D
E
Y
G
D
I
Q
G
L
V
T
V
E
D
I
L
E
E
I
V
G
--------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
53.57
25%
-105
- C2 -
-
3HF7
1
?
A:
[4-127]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
N
D
I
M
V
P
R
N
E
I
V
G
I
D
I
N
D
D
W
K
S
I
V
R
Q
L
T
H
S
P
H
G
R
I
V
L
Y
R
D
S
L
D
D
A
I
S
M
L
R
V
R
E
A
Y
R
L
M
T
E
K
K
---
E
F
T
K
--
E
I
M
L
R
A
AD
E
I
Y
F
V
P
E
G
T
P
L
S
T
Q
L
V
K
F
Q
R
N
K
K
K
V
G
L
V
V
D
E
Y
G
D
I
Q
G
L
V
T
V
E
D
I
L
E
E
I
V
G
--------------------------------------------------------------------------------------------------------
45
HHSearch
52.28
36%
-62
- C2 -
-
2PLS
-
?
D:
[6-85]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
E
D
G
S
W
L
L
D
G
L
I
A
V
P
E
L
K
D
T
L
G
L
R
A
V
P
E
E
E
K
G
V
Y
H
T
L
S
G
M
I
M
W
L
L
G
R
L
P
Q
T
G
D
I
T
F
W
E
N
W
R
L
E
V
I
D
M
D
S
K
R
I
D
K
V
L
A
T
K
I
-------
9
PsiBlast_PDB
51.84
30%
-75
- C2 -
-
3NQR
1
CORC_SALTY
A:
[3-124]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
V
R
D
I
M
I
P
R
S
Q
M
I
T
L
K
R
N
Q
T
L
D
E
C
L
D
V
I
I
E
S
A
H
S
R
F
P
V
I
S
E
D
K
D
H
I
E
G
I
-
L
M
A
K
D
L
L
P
F
M
R
S
D
---
A
E
A
F
SM
D
K
V
L
R
---
T
A
V
V
V
P
E
S
K
R
V
D
R
M
L
K
E
F
R
S
Q
R
Y
H
M
A
I
V
I
D
E
F
G
G
V
S
G
L
V
T
I
E
D
I
L
E
L
I
----------------------------------------------------------------------------------------------------------
35
HHSearch
50.82
28%
-147
- C2 -
-
3LAE
3
A:
[6-80]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
S
D
G
S
M
I
I
D
G
S
A
N
L
R
D
L
N
K
M
F
N
W
E
L
-
D
---
T
E
D
A
R
T
F
N
G
L
I
L
E
H
L
E
E
I
P
D
E
G
T
I
C
E
I
D
G
L
L
I
T
I
L
E
V
G
D
N
M
I
K
Q
A
K
V
V
K
--------