@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VPK0: (2017-11-21 )
MAEQNVITSMLDDLSNEQPIHTALCIGQKIDQNNAIQWHYFTVTELLSLPFTQRYDLGFVLFDTDEMQDISDVQKSQLLVKLRDLLAKRIVVVSKRSDEQLLRSLGFTQLIDKTSHDSDFALWQFNILTYKHVPDWFNSKFWANPENWNKFRW
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------.........10.--------.......20.....--...30-.........--40--........-.-50---------..-......60---.-.......70-..-----....-..80-.-......------.90--......--...100--------........110.-......120........-----.------130----...-......140-----...-.---.....150.-----------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------MA
E
Q
N
V
I
T
S
M
L
D
--------DLSNEQP
I
H
T
A
L
CI--GQKI--DQNN
A
I
Q
W
H
--
Y
---
F
T
V
T
E
L
LS-L-PF---------TQ-RYD
L
G
F
V
L
---F-DT
D
E
M
Q
D
I
S
-
D
V
-----
Q
K
S
Q
-
L
L
V
K
-
L
-
R
D
L
L
A
K
------
R
I
---
V
V
V
SKR--
S
D
E
Q
L
---------
L
R
SLG
F
T
Q
L
I
DK-TSHDS
D
F
--
A
L
W
Q
F
N
I
L
-----
T
------
Y
------KHV-
P
D
W
FNSK-------FWA-N---PENWNKFRW-----------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
70.43
22%
-134
- C4 -
-
4TYZ
1
?
A:
[1-109]
---------------------------------------------------------------------------------------
N
I
E
G
V
F
R
K
S
F
P
--------
D
L
A
G
E
T
L
L
D
S
F
N
C
A
--
W
V
E
-----
G
S
A
L
K
Q
G
--
Y
---
L
F
I
T
P
H
-
W
-
L
-
C
F
---------
Q
S
-
T
L
A
A
A
H
F
S
---
I
-
E
Y
D
E
---
I
K
-
D
I
-----
I
K
S
-----
K
-
S
-
V
K
M
F
E
N
------
A
I
---
E
V
K
T
H
L
--
N
D
T
I
F
---------
L
T
-------------------------
N
F
L
-----
Q
------
R
------
D
Q
A
-
Y
S
A
L
M
S
Q
-------
W
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
68.86
20%
-3
- C4 -
-
5F3Q
-
?
A:
[2-193]
----------------------------------------------------------------------------SSTTL
H
N
A
M
Q
Y
T
A
F
D
V
L
S
S
I
L
N
L
M
K
A
DPLY
D
L
L
Q
D
Q
E
Y
E
K
N
E
F
Y
--
G
D
S
Y
--
L
E
E
R
A
S
S
L
V
--
L
---
K
F
L
R
K
Y
E
Q
-
I
-
P
F
----------
E
M
Y
S
G
L
R
I
H
T
---
V
-
K
N
Q
T
L
G
E
I
F
-
D
L
L
HLGD
T
K
T
F
-
E
K
K
K
-
K
-
G
D
L
V
E
S
------
L
I
G
G
C
V
L
L
S
Q
R
--
E
N
A
T
L
---------
F
L
L
F
A
H
A
-
L
I
D
Y
-
I
F
Y
H
S
S
Y
--
I
Y
F
N
A
N
P
P
-----
K
------
L
V
K
E
E
I
I
T
D
I
-
Q
N
W
F
K
D
K
-------
L
F
Y
-
Y
---
R
S
S
L
E
K
Y
Q
T
-----------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
58.75
34%
-19
- C5 -
-
4BY6
-
?
A:
[434-513]
---------------------------------------------------------------------------------------------------------------------------------
Q
N
G
S
I
E
M
K
--
Y
Q
I
I
L
S
I
V
E
Q
L
R
-
Y
-
P
N
---------
I
H
-
T
Y
W
F
S
F
V
L
M
N
M
F
-
K
S
D
E
W
N
D
Q
K
L
E
V
-----
Q
E
-----
I
I
-
L
-
R
N
F
L
-
K
------
R
I
---
I
V
---
N
--
K
P
H
T
W
---------
G
V
S
V
F
F
T
Q
L
I
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
56.22
16%
9
* C4 *
-
2B2A
-
TERT_TETTH
A:
[13-191]
----------------------------------------------------------------------------------MLTR
K
E
D
L
L
T
V
L
K
Q
I
S
--------
A
L
K
Y
V
S
N
L
Y
E
F
L
L
A
--
T
E
K
I
--
V
Q
T
S
E
----------------
L
D
-
T
-
Q
F
---------
Q
E
-
F
L
T
T
T
I
I
A
---
S
-
E
Q
N
L
V
E
N
Y
K
-
Q
M
-----
T
I
K
Q
-
V
I
D
D
-
S
-
I
I
L
L
G
N
------
K
Q
---
N
Y
V
Q
Q
I
--
G
T
T
T
I
GFYVEYRQT
L
Y
S
S
N
F
R
N
L
L
N
I
F
G
E
E
D
F
K
Y
--
F
L
I
D
F
L
V
F
-----
T
K
VEQN
G
Y
------
L
Q
V
-
A
G
V
C
L
N
Q
-------
Y
F
S
-
V
Q
V
K
Q
K
K
W
Y
K
N
N
------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
54.55
19%
19
- C1 -
-
5EZ7
1
Y4991_PSEAE
A:
[2-392]
M
P
Q
A
L
S
T
D
I
L
I
V
G
GG
I
A
G
L
W
L
N
A
R
L
R
R
A
G
Y
A
T
V
L
V
E
SASLGGGQSVKSQGIIHGGTGAS
E
A
I
A
D
M
P
R
R
W
R
A
C
L
G
SDGELDLRGVRL
L
S
E
A
H
Y
L
W
S
P
V
E
--------
Q
A
K
G
E
D
L
---
P
P
A
L
--
R
D
K
G
--
F
K
G
K
A
Y
R
L
T
E
I
V
---
F
D
V
P
D
L
I
R
-
R
-
L
A
---------
E
L
-
A
---
G
D
S
L
---
L
-
A
G
E
R
I
E
P
L
R
-
E
G
-----
R
E
L
A
G
L
C
V
D
-
G
-
R
E
I
R
A
Q
------
R
V
---
V
L
S
A
G
A
--
G
N
E
A
L
---------
L
R
E
L
G
L
E
Q
-
P
A
M
-
Q
R
R
P
L
H
M
--
V
M
V
K
A
A
T
L
-----------------------
K
P
L
Y
A
H
C
-------
L
G
A
-
G
---
P
K
P
----
R
I
T
V
T
T
H
P
T
RDG
Q
S
V
W
Y
L
G
G
DIAE
T
D
G
V
A
RD
E
A
A
Q
I
A
E
A
R
R
E
L
A
K
LLPWIDLGQ
A
Q
W
A
T
L
R
V
D
R
A
E
P
A
QSNLLRPD
N
A
F
L
A
E
Q
GR
L
L
V
G
W
PTKLAL
A
P
D
F
A
D
R
V
C
A
R
L
E
E
D
GI
R
P
S
E
H
A
A
LPQ
L
P
R
P
P
L
A
E
P
A
W
E
V
A
F
A
22
Fugue
52.73
16%
46
- C2 -
-
4MT5
-
?
A:
[0-183]
----------------------------------------------------------------------------------------
M
Q
T
A
Y
V
K
Y
V
D
--------
D
T
T
G
E
T
L
R
Q
D
D
L
H
G
Y
T
D
E
T
I
PY
S
T
A
E
G
I
K
K
Y
--
E
---
G
D
G
Y
V
L
V
S
-
D
-
G
F
KPG
T
K
F
G
VG
T
P
-
T
Y
E
V
H
F
K
H
---
G
-
M
T
H
T
D
A
T
D
K
-
N
A
-----
E
Q
K
T
-
V
T
E
T
-
I
-
H
Y
V
D
E
N
------
N
Q
---
T
V
Q
P
D
S
--
T
T
A
V
T
---------
F
K
R
-
G
Y
T
T
D
-
N
V
-
T
G
K
V
V
S
Y
--
D
P
W
T
V
D
G
N
QAD
S
K
T
------
F
------
A
A
V
-
P
S
P
A
V
E
G
-------
Y
T
P
-
N
---
H
Q
Q
I
N
E
F
T
V
T
PDS
K
D
I
V
K
T
V
V
Y
V
G
DP------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
52.48
40%
-255
- C5 -
-
5EZ7
1
Y4991_PSEAE
A:
[190-221]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
C
V
D
-
G
-
R
E
I
R
A
Q
------
R
V
---
V
L
S
A
G
A
--
G
N
E
A
L
---------
L
R
E
L
G
L
E
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
49.52
34%
3
- C5 -
-
5AJD
-
?
A:
[1974-2059]
---------------------------------------------------------------------------------------------------------------------------------
Q
N
G
S
I
E
M
K
--
Y
Q
I
I
L
S
I
V
E
Q
L
R
-
Y
-
P
N
---------
I
H
-
T
Y
W
F
S
F
V
L
M
N
M
F
-
K
S
D
E
W
N
--
K
L
E
V
-----
Q
E
-----
I
I
-
L
-
R
N
F
L
-
K
------
R
I
---
I
V
---
N
--
K
P
H
T
W
---------
G
V
S
V
F
F
T
Q
L
I
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
47.17
12%
-15
- C- -
-
3CAN
-
?
A:
[7-185]
----------------------------------------------------------------------------------------
G
G
G
V
T
F
C
G
G
E
--------
P
L
L
H
P
E
F
L
I
D
I
L
K
R
--
C
G
Q
Q
--
G
I
H
R
A
V
D
T
T
--
L
---
L
A
R
K
E
T
V
D
E
V
M
R
N
---------
C
E
-
L
L
L
I
D
-
L
K
---
S
M
D
S
T
V
H
Q
T
F
C
-
D
V
-----
P
N
E
L
-
I
L
K
N
-
I
-
R
R
V
A
E
A
D
F
P
Y
Y
I
R
I
---
P
L
I
E
G
V
NA
D
E
K
N
I
---------
K
L
S
A
E
F
L
A
S
L
P
R
-
H
---------
P
E
I
I
N
L
L
-----
P
------
Y
------
H
D
K
M
Q
T
P
S
E
E
V
-------
Q
Q
Q
-
C
---
I
Q
I
L
T
D
Y
G
L
K
A
T
I
G
G-----------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
39.66
34%
-34
- C6 -
-
3IJ6
-
?
A:
[115-177]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
S
S
I
K
--
D
D
E
N
L
---------
V
G
A
Q
I
F
T
R
H
L
G
K
-
S
I
A
D
K
E
F
R
P
V
L
A
Q
A
A
K
L
--------------------
H
V
-
P
L
W
M
H
P
V
-------
F
D
A
R
K
---
P
D
N
N
L
V
F
S
W
-----------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
39.60
40%
-39
- C5 -
-
1G2Y
-
HNF1A_MOUSE
A:
[1-31]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
V
S
-----
K
L
S
Q
-
L
Q
T
E
M
L
-
A
A
L
L
E
---------------
S
G
L
--
S
K
E
A
L
---------
I
Q
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
38.21
38%
-84
- C5 -
-
1G2Z
-
HNF1A_MOUSE
A:
[1-32]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
V
S
-----
K
L
S
Q
-
L
Q
T
E
-
L
M
A
A
L
L
E
---------------
S
G
L
--
S
K
E
A
L
---------
I
Q
A
L
G
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
35.80
47%
-152
* C5 *
-
2PL9
-
CHEZ_SALTY
D:
[1-19]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
---
V
V
A
S
Q
D
--
Q
V
D
D
L
---------
L
D
S
L
G
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
35.54
33%
0
- C- -
-
2A1R
1
PARN_HUMAN
A:
[60-217]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
S
M
D
F
--
L
L
F
Q
F
G
L
C
-----
T
------
F
------
K
Y
---
D
Y
T
D
S
K
Y
I
T
K
S
F
N
F
Y
V
-
F
---
P
K
P
F
N
R
--------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
34.02
33%
-42
- C3 -
-
2A1S
-
PARN_HUMAN
A:
[60-129]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
S
M
D
F
--
L
L
F
Q
F
G
L
C
-----
T
------
F
------
K
Y
---
D
Y
T
D
S
K
Y
I
T
K
S
F
N
F
Y
V
-
F
---
P
K
P
F
N
R
--------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
29.66
40%
-45
- C6 -
-
3NL1
1
?
A:
[176-200]
-----------------------------------------------------------------------------------------------------------------------------------------------------
L
D
-
I
-
P
F
---------
S
Q
-
Q
M
D
V
G
F
F
E
---
F
-
G
S
D
R
V
T
D
Y
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
29.41
40%
-28
* C6 *
-
3NW4
1
?
A:
[176-200]
-----------------------------------------------------------------------------------------------------------------------------------------------------
L
D
-
I
-
P
F
---------
S
Q
-
Q
M
D
V
G
F
F
E
---
F
-
G
S
D
R
V
T
D
Y
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
29.16
35%
140
- C7 -
-
5T6Q
-
CP4B1_RABIT
A:
[392-408]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
N
S
D
-------
V
W
P
-
D
---
P
E
V
F
D
P
L
R
F
-----------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
29.05
40%
-42
- C6 -
-
3NJZ
1
?
A:
[176-200]
-----------------------------------------------------------------------------------------------------------------------------------------------------
L
D
-
I
-
P
F
---------
S
Q
-
Q
M
D
V
G
F
F
E
---
F
-
G
S
D
R
V
T
D
Y
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
HHSearch
28.81
35%
142
- C7 -
-
4UYM
-
?
A:
[359-375]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
E
E
-------
H
F
P
-
N
---
P
L
E
W
N
P
H
R
W
-----------------------------------------------------------------------------------------------------------------------------------------