@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VQ01: (2017-11-24 )
MGQDHIEQHRRYIVISYAFMFLALFTVIFAAFAYLVARKVAVVDDAEVWIHAHALWIMRNGILFLLMSVFAVAWFIPLFFFAWDSNLWVTASTVAGVVFSAIAWLFLLNAWLKGLSKYLKNKAVF
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10..--------......-20--.......---------.30..---......40------...--------......50.--------...-----.----...60........70---..------------.......80........----90.......------------.-100.......110-........--.120...------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
G
Q
D
H
I
E
Q
H
R
R
Y
I
--------
V
I
S
Y
A
F
-
M
F
--
L
A
L
F
T
V
I
---------
F
A
A
F
A
---
Y
L
V
A
R
K
V
-------
A
V
V--------DDA
E
V
W
I
H
A
--------
H
A
L
-----
W
----
I
M
RN
G
I
L
F
L
L
M
S
V
F
----
A
V
------------
A
W
F
I
P
L
F
F
F
AWDSN
L
W
V
----
T
A
S
T
V
A
G
V
V
------------
F
-
S
A
I
A
W
L
F
L
L
N
A
---
W
L
K
G
L
S
K
Y
--
L
KNKAVF------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
68.64
13%
-213
- C5 -
-
2UUI
12
LTC4S_HUMAN
A:
[1-155]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
H
H
H
H
--
H
H
K
D
E
V
--------
A
L
L
A
A
V
-
T
L
--
L
G
V
L
L
Q
A
---------
Y
F
S
L
Q
---
V
I
S
A
R
R
A
-------
F
R
V
SPPLTTGP
P
E
F
E
R
V
Y
R
A
--------
Q
V
N
-----
C
----
S
E
Y
F
P
L
F
L
A
T
L
W
V
A
----
G
I
FFH
E
G
A
A
A
L
C
G
L
V
Y
L
F
A
R
L
R
Y
F
Q
G
Y
A
R
S
A
----
Q
L
R
L
A
P
L
Y
A
------------
S
-
A
R
A
L
W
L
L
V
A
L
A
---
A
L
G
L
L
A
H
F
--
L
P
A
A
L
R
A
A
L
L
G
R
LRTLLPW------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
68.28
18%
-131
- C4 -
-
2N3Z
-
?
A:
[1-99]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
-------
R
L
V
V
--------
V
V
T
S
-------
E
Q
L
K
E
E
V
---------
R
K
K
F
P
---
Q
V
E
V
R
L
V
-------
T
T
E
--------
E
D
A
K
Q
V
I
K
E
--------
I
Q
K
-----
K
GVQ
K
V
V
L
V
G
V
S
E
K
L
L
Q
K
I
----
K
Q
------------
E
A
N
V
Q
V
Y
R
V
T
S
N
D
E
L
E
Q
----
V
V
K
D
V
K
G
--------------------------------
S
G
L
E
H
H
--
H
H
H
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
65.11
20%
-100
* C4 *
-
5EY9
5
FAA32_MYCMM
A:
[3-626]
YHNPFIVNG
K
I
R
F
P
E
NTN
L
V
R
H
V
E
K
W
A
R
VRGDKLAYRFLDFSTERD
G
V
E
R
D
I
L
W
S
E
F
S
A
R
N
R
A
V
G
A
R
L
Q
Q
V
TQPG
D
R
I
A
I
LCPQN
L
D
Y
L
I
S
F
F
G
A
L
Y
S
G
R
I
A
V
P
L
F
D
PAEH
V
G
R
L
H
A
V
L
D
D
CTPS
T
I
L
T
T
TDS
A
E
G
V
R
K
F
I
R
S
RSAKERPRVIAVDAVPTEVASTWQQPNELTTA
Y
L
Q
Y
TV
P
S
G
V
Q
I
T
H
L
N
L
P
T
N
V
L
Q
V
L
N
A
L
E
G
Q
E
G
D
R
--------
G
V
S
W
L
P
-
F
F
H
D
M
G
L
I
T
V
L
---------
L
A
S
V
L
G
H
S
F
T
F
M
T
P
A
-------
A
F
V
--------
R
R
P
G
R
W
I
R
E
--------
L
A
R
-----
K
----
P
G
E
T
G
G
T
F
S
A
A
P
N
F
----
A
F
------------
E
H
A
A
M
R
G
V
-
P
R
D
D
E
P
P
L
----
D
L
S
N
V
K
G
I
L
------------
N
G
S
E
P
V
S
P
A
S
M
R
K
---
F
F
K
A
F
E
P
Y
G-
L
R
E
T
A
V
K
P
S
Y
G
L
AEATLFVSTTPMDE
V
P
T
V
I
H
V
D
R
D
E
L
N
K
Q
R
F
V
E
V
A
ADAPN
A
V
A
Q
V
S
AGKVGVD
E
W
A
V
I
V
DTETA
S
E
L
P
D
GQI
G
E
I
W
L
H
G
NNLGIGYWGK
E
E
E
S
A
Q
T
FRNILKSRVPESHAEGAPDD
G
L
W
V
R
TG
D
Y
G
T
Y
F
KG
H
L
Y
I
AGRIKD
L
V
I
I
DG
R
N
H
Y
P
Q
D
L
E
Y
T
A
Q
E
S
TKALRVGY
V
A
A
F
S
V
P
ANQLP
Q
K
V
F
D
DPHAGLSFDPEDT
S
E
Q
L
V
I
V
G
E
R
A
A
GTHKLE
Y
Q
P
I
A
D
D
I
R
A
A
I
A
V
G
HGVTVR
D
V
L
L
V
S
A
GTIPRTSSGKIG
R
R
A
C
R
T
A
Y
I
D
GSLRSTVFA
21
Fugue
64.99
14%
-145
- C4 -
-
2LKZ
-
A:
[1-95]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
H
H
H
H
H
H
M
D
T
I
I
--------
L
R
N
I
A
P
H
T
V
--
V
D
S
I
M
T
A
---------
L
S
P
Y
A
---
S
L
A
V
N
N
I
-------
R
L
I
--------
K
D
K
Q
T
Q
-------------------------
Q
N
R
G
F
A
F
V
Q
L
S
S
A
----
M
D
------------
A
S
Q
L
L
Q
I
L
Q
S
L
H
P
P
L
K
I
----
D
G
K
T
I
G
V
D
F
------------
A
-
K
S
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
62.82
26%
-230
* C5 *
-
1H2S
-
HTR2_NATPH
B:
[1-60]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
V
F
-
I
F
--
V
G
A
L
T
V
L
---------
F
G
A
I
A
---
Y
G
E
V
T
A
A
-------
A
A
T
--------
G
D
A
A
A
V
Q
E
A
--------
A
V
S
-----
A
----
I
L
G
L
I
I
L
L
G
I
N
L
G
L
----
V
A
------------
A
T
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
59.57
12%
-44
- C2 -
-
1B78
-
IXTPA_METJA
A:
[10-193]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K
I
Y
F
A
T
G
N
P
N
K
I
K
E
A
N
--------
I
I
L
K
D
L
-
K
D
--
V
E
I
E
Q
I
K
I
S
Y
P
EIQGT
L
E
E
V
A
---
E
F
G
A
K
W
V
Y
N
I
LK
K
P
V
I
V
--------
E
D
S
G
F
F
V
E
A
LNGFPGTY
S
K
F
-----
V
----
Q
E
T
I
G
N
E
G
I
L
K
L
L
E
GKDN
R
N
------------
A
Y
F
K
T
V
I
G
Y
C
D
E
N
G
V
R
L
----
F
K
G
I
V
K
G
R
V
S
E
E
I
R
S
KGYGFA
Y
-
D
S
I
F
I
P
E
E
E
E
R
---
T
F
A
E
M
T
T
E
--
E
K
S
Q
I
S
H
R
K
K
A
F
E
E
F
K
K
F
L
L
D
RI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
58.43
12%
-165
* C3 *
-
1H5P
-
SP100_HUMAN
A:
[594-688]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
-
E
N
I
N
F
K
Q
S
E
L
--------
P
V
T
C
G
E
-
V
K
--
G
T
L
Y
K
E
R
---------
F
K
Q
G
-------
T
S
K
K
-------
C
I
Q
--------
S
E
D
K
K
W
F
T
P
--------
R
E
F
-----
E
----
I
E
G
D
R
-------------------------------------
G
A
S
K
N
W
K
----
L
S
I
R
C
G
G
Y
T
------------
L
-
K
V
L
M
E
N
K
F
L
P
E
---
P
P
S
T
R
K
K
V
--
T
I
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
56.52
16%
-39
- C1 -
-
3J9O
-
?
A:
[2-135]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
N
K
I
P
N
S
R
L
M
I
N
Y
E
T
N
V
D
G
V
L
K
K
K
E
-
L
P
--
Y
R
V
L
V
V
G
---------
D
L
S
K
G
---
R
S
V
D
A
K
K
-------
E
F
A
--------
D
R
E
V
R
R
V
N
N
G
V
D
-----
R
V
L
-----
E
----
E
M
N
I
S
F
D
F
E
A
P
N
F
V
----
S
K
------------
D
P
S
N
L
K
V
N
Y
R
I
E
S
V
K
D
F
----
R
P
D
A
V
A
K
K
V
--------------
P
E
I
R
A
L
L
E
M
K
E
---
I
L
A
S
F
A
K
D
--
I
E
N
N
R
N
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
56.13
26%
-214
- C5 -
-
2F95
-
HTR2_NATPH
B:
[24-76]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
--
V
G
A
L
T
V
L
---------
F
G
A
I
A
---
Y
G
E
V
T
A
A
-------
A
A
T
--------
G
D
A
A
A
V
Q
E
A
--------
A
V
S
-----
A
----
I
L
G
L
I
I
L
L
G
I
N
L
G
L
----
V
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
50.91
19%
-71
- C3 -
-
2LUW
-
?
A:
[1-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
V
L
K
N
N
T
P
V
S
N
L
--------
T
G
N
K
G
S
-
E
V
--
F
Y
T
F
T
V
D
---------
R
N
A
T
A
---
V
V
S
I
S
G
G
-------
S
----------
G
D
A
D
L
Y
L
K
A
--------
G
S
K
P
T
TSS
W
----
D
C
R
P
------------------------------------
Y
R
Y
G
N
N
E
S
C
----
S
V
S
A
A
P
G
T
T
----------------------
Y
H
V
---
M
I
K
G
Y
S
N
Y
SG
V
T
L
K
L
Q
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
44.03
40%
33
- C6 -
-
1OFZ
3
LECF_ALEAU
A:
[194-235]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
D
S
N
S
W
Y
V
G
G
F
S
A
S
A
S
A
G
V
S
------------
I
-
A
A
I
S
W
G
S
T
P
N
I
R
V
Y
W
Q
K
G
R
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
43.61
40%
33
- C6 -
-
1IUC
1
LECF_ALEAU
A:
[194-235]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
D
S
N
S
W
Y
V
G
G
F
S
A
S
A
S
A
G
V
S
------------
I
-
A
A
I
S
W
G
S
T
P
N
I
R
V
Y
W
Q
K
G
R
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
43.40
40%
33
* C6 *
-
1IUB
-
LECF_ALEAU
A:
[194-235]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
D
S
N
S
W
Y
V
G
G
F
S
A
S
A
S
A
G
V
S
------------
I
-
A
A
I
S
W
G
S
T
P
N
I
R
V
Y
W
Q
K
G
R
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
35.67
23%
49
- C5 -
-
1P32
-
C1QBP_HUMAN
A:
[270-282]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
---
F
L
E
D
L
K
S
F
--
V
K
S
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
29.38
24%
130
- C5 -
-
3S9D
-
IFNA2_HUMAN
C:
[121-137]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
R
K
---
Y
F
Q
R
I
T
L
Y
--
L
K
E
K
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
27.64
24%
-
- C5 -
-
2LAG
-
IFNA2_HUMAN
A:
[118-134]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
R
K
---
Y
F
Q
R
I
T
L
Y
--
L
K
E
K
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
27.14
35%
158
- C5 -
-
3SE4
-
IFNW1_HUMAN
B:
[124-140]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
R
R
---
Y
F
Q
G
I
R
V
Y
--
L
K
E
K
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
26.42
29%
-
- C5 -
-
1AU1
-
IFNB_HUMAN
A:
[121-137]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
K
R
---
Y
Y
G
R
I
L
H
Y
--
L
K
A
K
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
26.16
18%
-
- C5 -
-
3OQ3
-
IFNA5_MOUSE
A:
[119-135]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
R
K
---
Y
F
H
R
I
T
V
Y
--
L
R
E
K
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
24.69
24%
244
- C5 -
-
1WU3
-
IFNB_MOUSE
I:
[116-132]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
K
S
---
Y
Y
W
R
V
Q
R
Y
--
L
K
L
M
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------