@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VQD0: (2017-11-26 )
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTLLAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLGKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVALTQENRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30----........40........50........---60........70........80........-90--.-.------.......--------------100.......110---------------.---......120.......130----......--------------------..140----.-.--.--....150.......160.....------..170.......180.......190.......200-------.........210----------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MFKFL
N
P
Q
Y
L
F
Q
L
L
S
P
C
L
L
CEIGT
R
E
K
Y
S
L
C
----
K
E
C
W
E
Q
L
P
W
L
K
Q
T
I
QRND
Q
S
V
L
V
A
C
HYA---Y
P
I
N
R
I
I
Q
Q
F
K
Y
E
Q
K
L
H
Y
Q
T
L
L
A
E
V
L
Q
QLK-F---P-K------
V
Q
A
I
VPM--------------PI
S
K
Q
R
L
T
E
RGF
N
---------------
Q
---
S
L
L
L
A
N
L
LGKQLKIP
V
W
Q
-----
P
V
Q
R
L
N
--------------------
E
H
S
Q
K
----
G
-
L
--
S
--
R
L
E
R
F
E
N
I
E
Q
Q
F
V
A
L
T
QENR
R
Y
------
R
R
V
L
I
I
DDVITTG
S
S
I
H
A
L
S
Q
A
L
K
QLGC
T
S
I
H
A
---------
S
C
L
AAASSTSY-----------------------------------------------------------------------------------------
71
Fugue
57.61
17%
-122
- C4 -
-
1G2Q
-
APT1_YEAST
A:
[1-178]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
I
A
S
Y
A
Q
E
L
K
----
L
A
L
H
Q
Y
P
N
F
P
S
E
G
I
L
F
E
D
---------------
F
L
P
I
F
R
N
-
P
G
L
F
Q
K
L
I
D
A
F
K
L
H
L
E
E
A
F
P
-
E
---
V
-
K
------
I
D
Y
I
V
G
L
---------------------
E
S
R
G
F
L
---------------
F
---
G
P
T
L
A
L
A
L
G
-----
V
G
F
V
-----
P
V
R
K
A
G
--------------------
K
L
P
G
E
----
C
-
F
--
K
--
A
T
Y
E
K
E
Y
G
S
D
L
F
E
I
Q
K
N
A
I
P
A
G
------
S
N
V
I
I
V
D
D
I
I
A
T
G
G
S
A
A
A
A
G
E
L
V
E
Q
L
E
A
N
L
L
E
Y
---------
N
F
V
M
E
L
D
F
L
K
G
RSKLN
A
P
V
F
T
LL-----------------------------------------------------------------------------
69
Fugue
57.49
16%
29
- C4 -
-
1O57
4
PURR_BACSU
A:
[2-276]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K
F
R
R
S
G
R
L
V
D
L
T
N
Y
L
L
T
H
P
H
E
L
I
P
L
T
F
F
S
E
R
Y
ESA
K
S
S
I
S
E
D
L
T
I
I
K
Q
T
F
E
Q
Q
G
I
G
T
L
L
T
V
P
G
A
---
A
G
G
V
K
Y
I
P
K
M
K
Q
A
E
A
E
E
F
V
Q
T
L
G
Q
S
L
A
N
P
E
-
R
---
I
-
L
PGGYVY
L
T
D
I
L
G
K
--------------
P
S
V
L
S
K
V
G
K
L
F
A
S
V
F
A
EREID
V
V
M
T
V
A
T
K
---
G
I
P
L
A
Y
A
A
A
S
Y
L
N
V
P
-
V
V
-----
I
V
R
K
----------------------
D
G
S
T
V
----
S
-
I
--
N
--
Y
V
S
G
S
S
N
R
I
Q
T
M
S
L
A
K
R
S
M
K
T
G
------
S
N
V
L
I
I
D
D
F
M
K
A
G
G
T
I
N
G
M
I
N
L
L
D
E
F
N
A
N
V
A
G
I
---------
G
V
L
V
E
A
E
G
V
D
E
RLV
D
E
Y
M
S
L
L
T
L
S
TINMKEK
S
I
E
I
Q
NGN
F
L
R
F
F
KDN-----------------------------------------------------
11
PsiBlast_PDB
52.70
43%
-267
- C4 -
-
1I5E
1
UPP_BACCL
A:
[125-163]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
D
F
I
I
V
D
P
M
L
A
T
G
G
S
A
V
A
A
I
D
A
L
K
K
R
G
A
K
S
I
K
F
---------
M
C
L
I
A
A
----------------------------------------------------------------------------------------------
57
HHSearch
52.48
20%
-35
- C4 -
-
1Y0B
2
XPT_BACSU
B:
[32-160]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
D
P
L
L
M
Q
R
I
G
D
E
F
A
S
R
F
A
K
---
D
-
G
------
I
T
K
I
V
T
I
--------------
E
S
S
-------
G
I
----------------------
A
P
A
V
M
T
G
L
K
L
G
V
P
V
V
F
-----
A
R
-
K
H
K
--------------------
S
L
T
L
T
DN--
L
-
L
--
T
A
S
V
Y
S
F
T
---
E
S
Q
I
A
V
S
G
T
H
L
S
D
Q
------
D
H
V
L
I
I
D
D
F
L
A
N
G
Q
A
A
H
G
L
V
S
I
V
K
Q
A
G
A
S
I
A
G
I
---------
G
I
V
I
E
K
S
---------------------------------------------------------------------------------------------
72
Fugue
51.90
16%
-16
- C4 -
-
1ECF
3
PUR1_ECOLI
A:
[1-492]
C
G
I
V
G
I
AGVMPV
N
Q
S
I
Y
D
A
L
T
V
L
QHRGQD
A
A
G
I
I
T
I
D
ANN
C
F
R
L
R
K
A
N
G
L
V
S
D
V
F
E
A
R
H
M
Q
R
LQGN
M
G
I
G
H
V
R
Y
P
TAGSSSASEAQPFYVNSPY
G
I
T
L
A
H
N
G
NLTN
A
H
E
L
R
K
K
L
F
E
EKRRHINTTS
D
S
E
I
L
L
N
I
F
A
S
E
L
D
NFRHYPLE
A
D
N
I
F
A
A
I
A
A
T
N
R
L
I
RGAYA
C
V
A
M
I
I
G
H
G
M
V
A
F
R
D
PNGI
R
P
L
V
L
G
K
R
D
IDEN
R
T
E
Y
M
V
A
SES
V
A
L
D
T
L
G
F
D
F
L
R
D
V
-
A
P
G
E
A
I
Y
I
T
E
E
G
Q
L
F
T
R
----
Q
-----
C
A
D
----
N
P
V
S
N
P
C
L
F
E
Y
V
Y
F
A
---
R
P
D
S
F
I
D
K
I
S
V
Y
S
A
R
V
N
M
G
T
K
L
G
E
K
I
A
R
E
W
-
E
---
D
L
D
------
I
D
V
V
I
P
I
--------------
P
E
T
-------
S
C
D
---------------
I
---
A
L
E
I
A
R
I
L
G
K
P
Y
R
Q
G
F
V
K
NR
Y
V
G
R
T
F
I
M
P
--------------------
G
Q
Q
L
R
----
R
-
K
--
S
--
V
R
-------
R
K
L
N
A
N
R
A
E
F
R
D
-------
K
N
V
L
L
V
D
D
S
I
V
R
G
T
T
S
E
Q
I
I
E
M
A
R
E
A
G
A
K
K
V
Y
L
---------
A
S
A
A
P
E
I
R
F
P
N
VYG
I
D
M
P
S
ATELIAHGRE
V
D
E
I
R
Q
I
I
GAD
G
L
I
F
Q
D
L
N
D
L
I
D
A
V
R
A
E
NPDIQQFECSVFNGVYVTKDVD
Q
G
Y
L
D
F
L
D
T
L
R
N
D
D
A
K
A
V
Q
R
Q
52
HHSearch
51.63
18%
-56
- C4 -
-
5VN4
4
?
B:
[50-186]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
A
E
V
G
N
I
T
E
N
P
E
V
M
R
G
I
R
D
F
F
V
D
R
Y
-
K
NLQ
Q
-
P
------
I
T
H
I
L
G
F
--------------
D
S
R
-------
G
F
----------------------
L
L
G
P
M
I
A
V
E
L
N
V
P
F
V
L
------
I
R
K
A
N
--------------------
K
I
A
G
V
I
I
K
S
E
-
P
--
Y
--
T
K
E
Y
----
E
E
C
M
T
V
R
F
G
S
F
D
K
N
------
S
R
V
V
L
I
D
D
V
I
A
T
G
G
T
M
L
A
G
V
Q
L
V
D
A
C
G
A
T
L
V
E
V
---------
A
G
I
L
G
L
----------------------------------------------------------------------------------------------
33
PsiBlast_CBE
50.58
43%
-267
- C4 -
-
1I5E
1
UPP_BACCL
B:
[125-163]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
D
F
I
I
V
D
P
M
L
A
T
G
G
S
A
V
A
A
I
D
A
L
K
K
R
G
A
K
S
I
K
F
---------
M
C
L
I
A
A
----------------------------------------------------------------------------------------------
67
HHSearch
50.32
21%
-101
- C4 -
-
4X45
1
APT_HUMAN
B:
[42-159]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
G
L
L
A
R
H
L
K
A
T
H
-
G
---
G
-
R
------
I
D
Y
I
A
G
L
--------------
D
S
-------
R
G
F
----------------------
L
F
G
P
S
L
A
Q
E
L
G
L
G
C
V
-------
L
I
R
K
R
G-------------------
K
L
P
G
P
----
T
-
L
--
W
--
A
S
Y
S
----
K
A
E
L
E
I
Q
K
D
A
L
E
P
G
------
Q
R
V
V
V
V
D
D
L
L
A
T
G
G
T
M
N
A
A
C
E
L
L
G
R
L
Q
A
E
V
L
E
C
---------
V
S
L
V
E
L
----------------------------------------------------------------------------------------------
53
HHSearch
49.38
18%
-42
- C4 -
-
5VN4
4
?
A:
[50-186]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
A
E
V
G
N
I
T
E
N
P
E
V
M
R
G
I
R
D
F
F
V
D
R
Y
-
K
N
LQ
Q
-
P
------
I
T
H
I
L
G
F
--------------
D
S
R
-------
G
F
----------------------
L
L
G
P
M
I
A
V
E
L
N
V
P
F
V
L
------
I
R
K
A
N
--------------------
K
I
A
G
V
I
I
K
S
E
-
P
--
Y
--
T
K
E
Y
A
A
E
S
E
E
C
M
T
V
R
F
G
S
F
D
K
N
------
S
R
V
V
L
I
D
D
V
I
A
T
G
G
T
M
L
A
G
V
Q
L
V
D
A
C
G
A
T
L
V
E
V
---------
A
G
I
L
G
L
----------------------------------------------------------------------------------------------
48
HHSearch
48.77
17%
-9
- C4 -
-
1ECF
1
PUR1_ECOLI
B:
[250-397]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
C
L
F
E
Y
V
YFA
R
P
D
S
F
I
D
K
I
S
V
Y
S
A
R
V
N
M
G
T
K
L
G
E
K
I
A
R
E
W
E
D
---
L
-
D
------
I
D
V
V
I
P
I
--------------
P
E
T
S
-----------------------------
C
D
I
A
L
E
I
A
R
I
L
G
K
P
Y
R
Q
-----
G
F
V
K
N
R
Y-------------------
V
G
R
T
F
----
I
M
P
--
G
--
Q
Q
L
R
R
K
S
V
R
R
K
L
N
A
N
R
-
A
E
F
R
D
------
K
N
V
L
L
V
D
D
S
I
V
R
G
T
T
S
E
Q
I
I
E
M
A
R
E
A
G
A
K
K
V
Y
L
---------
A
S
A
A
P
-----------------------------------------------------------------------------------------------
58
HHSearch
48.47
20%
-30
- C4 -
-
1Y0B
2
XPT_BACSU
D:
[32-160]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
D
P
L
L
M
Q
R
I
G
D
E
F
A
S
R
F
A
K
---
D
-
G
------
I
T
K
I
V
T
I
--------------
E
S
S
-------
G
I
----------------------
A
P
A
V
M
T
G
L
K
L
G
V
P
V
V
F
-----
A
R
-
K
H
K
--------------------
S
L
T
L
T
DN--
L
-
L
--
T
AS
V
Y
S
F
T
K
Q
T
E
S
Q
I
A
V
S
G
T
H
L
S
D
Q
------
D
H
V
L
I
I
D
D
F
L
A
N
G
Q
A
A
H
G
L
V
S
I
V
K
Q
A
G
A
S
I
A
G
I
---------
G
I
V
I
E
K
S
---------------------------------------------------------------------------------------------
51
HHSearch
48.04
20%
-47
* C4 *
-
4LZA
-
APT_THEP3
B:
[48-175]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
P
V
L
K
D
A
K
A
F
N
Y
S
I
E
M
L
A
K
A
L
E
G
---
R
-
K
------
F
D
L
I
A
A
P
--------------
E
-------
A
R
G
F
L
----------------------
F
G
A
P
L
A
Y
R
L
G
V
G
F
V
------
P
V
R
K
P
G
--------------------
K
L
P
A
E
----
T
-
L
--
S
--
Y
E
Y
E
L
E
Y
G
T
D
S
L
E
I
H
K
D
A
V
L
E
G
------
Q
R
V
V
I
V
D
D
L
L
A
T
G
G
T
I
Y
A
S
A
K
L
V
E
S
L
G
G
I
V
D
S
I
---------
I
F
L
T
E
L
----------------------------------------------------------------------------------------------
56
HHSearch
47.18
17%
-60
- C4 -
-
1O57
3
PURR_BACSU
B:
[102-235]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
V
Y
L
T
D
I
L
G
K
P
S
V
L
S
K
V
G
K
L
F
A
S
V
F
A
E
---
R
-
E
------
I
D
V
V
M
T
V
--------------
A
T
K
-------
G
I
----------------------
P
L
A
Y
A
A
A
S
Y
L
N
V
P
V
V
I
------
V
R
K
D
------------------------
G
S
----
T
-
V
S
I
N
--
Y
V
S
G
S
S
N
R
I
Q
T
M
S
L
A
K
R
S
M
K
T
G
------
S
N
V
L
I
I
D
D
F
M
K
A
G
G
T
I
N
G
M
I
N
L
L
D
E
F
N
A
N
V
A
G
I
---------
G
V
L
V
E
A
----------------------------------------------------------------------------------------------
70
Fugue
47.14
12%
-87
- C4 -
-
1DKU
3
KPRS_BACSU
A:
[9-316]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
K
I
F
S
L
N
-
S
N
P
E
L
A
K
E
I
A
D
I
V
G
V
Q
L
G
K
C
S
V
----
T
R
F
S
D
G
E
V
Q
I
N
I
E
E
S
I
R
G
C
D
C
Y
I
I
Q
S
T
S
---
D
P
---------
V
N
E
H
I
M
E
L
L
I
M
V
D
A
L
K
R
A
S
-
A
---
K
-
T
------
I
N
I
V
I
P
Y
YGYARQDRKARSRE
P
I
T
A
K
L
F
A
N
L
L
E
T
---------------
A
GAT
R
V
I
A
L
D
L
H
A
P
Q
I
Q
G
F
F
D
I
-----
P
I
D
H
L
M
G
V
P
I
L
G
E
Y
F
E
G
K
NLED
I
V
I
V
S
P
D
H
G
----
G
-
V
--
T
--
R
A
R
K
L
A
D
R
L
K
A
P
I
A
I
I
D
K
R
M
N
I
VGNIEG
K
T
A
I
L
I
D
D
I
I
D
T
A
G
T
I
T
L
A
A
N
A
L
V
E
N
G
A
K
E
V
Y
A
C
C
THPVLSG
P
A
V
E
R
I
N
N
S
T
I
K
E
L
V
V
T
NSIKLKIE
R
F
K
Q
L
S
V
G
P
L
L
A
E
A
I
I
R
V
H
E
QQSVSYLF-----------------------------------------------
60
HHSearch
46.88
21%
-31
- C4 -
-
4M0K
1
?
B:
[58-179]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
L
L
R
L
A
I
E
A
L
L
E
P
F
Q
E
---
Q
-
E
------
I
T
K
V
V
G
I
--------------
E
S
-------
R
G
F
----------------------
I
L
G
G
M
L
A
H
H
L
D
A
G
F
V
P
------
V
R
K
K
G
--------------------
K
L
P
Y
Q
----
T
-
L
--
A
--
E
S
Y
Q
L
E
Y
G
T
D
T
I
E
M
H
I
D
A
I
E
P
G
------
D
R
V
L
I
H
D
D
V
I
A
T
G
G
T
A
E
A
T
I
R
L
V
E
R
A
G
G
E
V
V
G
C
---------
A
F
L
I
E
L
T
---------------------------------------------------------------------------------------------
8
PsiBlast_PDB
46.61
36%
-239
- C4 -
-
3LRT
-
KPRS_THEVO
A:
[204-239]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
L
L
I
V
D
D
I
I
S
T
G
G
T
I
A
K
S
S
G
L
L
R
E
K
G
A
S
K
I
Y
V
---------
S
A
V
-------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
46.43
36%
-238
- C4 -
-
3NAG
-
KPRS_THEVO
A:
[204-239]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
L
L
I
V
D
D
I
I
S
T
G
G
T
I
A
K
S
S
G
L
L
R
E
K
G
A
S
K
I
Y
V
---------
S
A
V
-------------------------------------------------------------------------------------------------
66
HHSearch
46.21
20%
-33
- C4 -
-
5B6H
1
?
A:
[37-156]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
Y
S
A
S
I
E
L
L
S
E
H
Y
S
E
---
S
-
G
------
V
T
K
V
V
G
T
--------------
E
A
R
-------
G
F
----------------------
L
F
G
A
P
V
A
L
A
L
G
V
G
F
V
-------
P
V
R
K
P
G-------------------
K
L
P
R
E
----
T
-
I
--
S
--
E
S
Y
E
L
E
Y
G
T
D
T
L
E
I
H
T
D
S
I
Q
P
G
------
D
K
V
L
V
V
D
D
L
L
A
T
G
G
T
I
E
A
T
V
K
L
I
R
R
L
G
G
E
V
V
H
A
---------
A
F
I
I
N
L
----------------------------------------------------------------------------------------------
30
PsiBlast_CBE
46.17
36%
-223
- C4 -
-
3MBI
1
KPRS_THEVO
D:
[206-241]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
L
L
I
V
D
D
I
I
S
T
G
G
T
I
A
K
S
S
G
L
L
R
E
K
G
A
S
K
I
Y
V
---------
S
A
V
-------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
45.99
36%
-204
- C4 -
-
3MBI
-
KPRS_THEVO
A:
[206-241]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
L
L
I
V
D
D
I
I
S
T
G
G
T
I
A
K
S
S
G
L
L
R
E
K
G
A
S
K
I
Y
V
---------
S
A
V
-------------------------------------------------------------------------------------------------