@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VQD6: (2017-11-26 )
MNKEQFDVNLVPTWRQGYRFQFEPAQNGFVILYPEGMIKLNESAGAIGQYIDGKNNVSAIIAQLKQQFGDVAEIDNDVIDYMLVAQQQHWIDLV
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30..--......40.........50..-......60..-----.....---.-70.-.......80........90...------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
N
K
E
Q
F
D
V
NLVPTWRQ
G
Y
R
F
Q
F
EPAQN
G
F
V
I
LY--PE
G
M
I
K
L-NESAGAIGQYIDG-KN
N
V
S
A
I
I
A
Q
-----
L
K
Q
QF---G-
D
V
A
-
E
I
D
N
D
V
I
D
Y
M
L
V
A
Q
Q
Q
HWIDLV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
82.56
28%
-106
- C2 -
-
5SXY
-
?
A:
[1-93]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
P
T
A
F
S
G
S
D
V
P
R
L
P
R
G
V
R
L
R
F
D
E
V
R
N
K
H
V
L
L
A
--
P
E
R
T
F
D
L
-
D
D
N
A
V
A
V
L
K
L
V
D
G
-
R
N
T
V
S
Q
I
A
Q
I
-----
L
G
Q
T
Y
---
D
-
A
D
P
A
I
I
E
A
D
I
L
P
M
L
A
G
L
A
Q
K
R
V
L
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
76.52
29%
-118
- C2 -
-
3G2B
-
PQQD_XANCP
A:
[6-95]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
S
R
D
S
C
P
A
L
R
A
G
V
R
L
Q
H
D
R
A
R
D
Q
W
V
L
L
A
--
P
E
R
V
V
E
L
-
D
D
I
A
L
V
V
A
Q
R
Y
D
G
-
T
Q
S
L
A
Q
I
A
Q
T
-----
L
A
A
E
F
---
D
A
D
A
S
-
E
I
E
T
D
V
I
E
L
T
T
T
L
H
Q
K
R
L
L
R
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
76.46
31%
-120
- C2 -
-
3G2B
-
PQQD_XANCP
A:
[13-95]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
A
L
R
A
G
V
R
L
Q
H
D
R
A
R
D
Q
W
V
L
L
A
--
P
E
R
V
V
E
L
-
D
D
I
A
L
V
V
A
Q
R
Y
D
G
-
T
Q
S
L
A
Q
I
A
Q
T
-----
L
A
A
E
F
D--
A
-
D
A
S
-
E
I
E
T
D
V
I
E
L
T
T
T
L
H
Q
K
R
L
L
R
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
74.42
27%
-121
- C2 -
-
3G2B
-
PQQD_XANCP
A:
[6-94]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
S
R
D
S
C
P
A
L
R
A
G
V
R
L
Q
H
D
R
A
R
D
Q
W
V
L
L
A
--
P
E
R
V
V
E
L
-
D
D
I
A
L
V
V
A
Q
R
Y
D
G
-
T
Q
S
L
A
Q
I
A
Q
T
-----
L
A
A
E
F
---
D
-
A
D
A
S
E
I
E
T
D
V
I
E
L
T
T
T
L
H
Q
K
R
L
L
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
72.77
33%
-126
- C2 -
-
5SXY
-
?
A:
[1-80]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
P
T
A
F
S
G
S
D
V
P
R
L
P
R
G
V
R
L
R
F
D
E
V
R
N
K
H
V
L
L
A
--
P
E
R
T
F
D
L
-
D
D
N
A
V
A
V
L
K
L
V
D
G
-
R
N
T
V
S
Q
I
A
Q
I
-----
L
G
Q
T
Y
D--
A
-
D
P
A
-
I
I
E
A
D
I
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
64.99
19%
-
- C2 -
-
3U3I
-
?
A:
[1-479]
MENKIEVNN
K
D
E
M
N
K
W
F
E
E
F
K
K
G
N
GLVDTFTNSYSFCESVPNL
D
R
F
V
F
Q
M
A
SATDDAQK
D
S
I
Y
A
S
A
L
V
E
A
T
KFCAP
I
Y
E
C
A
W
V
S
S
T
G
I
V
K
K
G
L
E
W
F
E
K
N
A
GTIKSWDES
Y
T
E
L
K
V
E
V
P
K
I
E
Q
L
A
D
Y
Q
Q
A
A
L
K
W
R
K
D
I
GFRVNANTTALSHKVLA
E
Y
K
V
P
GEI
V
M
S
V
K
E
M
L
S
D
M
I
R
R
R
N
LILR
E
H
V
E
W
C
R
E
F
V
K
G
K
Y
I
M
A
F
N
P
P
W
G
D
-----
I
N
K
S
G
R
S
G
I
A
L
V
--
A
T
G
L
A
K
L
-
A
E
T
E
K
--
G
V
F
D
E
A
-
K
K
T
V
E
A
L
N
G
Y
-----
L
N
K
H
K
---
D
-
E
V
D
-
K
A
S
A
D
S
M
I
T
N
L
L
K
H
I
A
K
A
Q
E
L
Y
K
N
S
S
A
L
R
A
Q
G
AQID
T
A
F
S
S
Y
Y
W
L
Y
K
A
GVTPET
F
P
T
V
S
Q
F
L
F
E
L
GKQPRG
T
K
K
M
K
K
A
L
L
S
TPLKW
G
K
K
L
Y
E
L
FADDRIYMHPAVLTAGR
I
S
E
M
G
V
C
FGTIPVANPDDAAQ
G
S
G
H
TKSILNLRTNTETNN
P
C
A
K
T
I
V
K
L
F
E
I
Q
K
T
G
FNIQDMDIV
A
S
E
H
L
L
H
Q
S
L
V
GKQSPFQNAYNVKGNATSA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
49.02
9%
-246
- C2 -
-
5EHK
-
?
A:
[232-292]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
R
-
S
P
V
V
A
E
I
L
G
A
A
R
R
-
P
V
L
A
G
R
L
A
Q
S
-----
V
A
Q
R
F
---
E
-
L
P
----
A
D
R
V
T
G
L
L
A
D
M
A
A
Q
E
L
L
I
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
46.74
8%
-85
- C2 -
-
4V1T
-
?
B:
[4-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
P
L
L
Q
I
Q
P
H
F
H
V
E
V
I
-
E
P
K
Q
V
Y
L
L
G
--
E
Q
A
N
H
A
L
T
G
Q
L
Y
C
Q
I
L
P
L
L
N
G
-
Q
Y
T
L
E
Q
I
V
E
K
-----
L
D
G
E
V
---
P
-------
P
E
Y
I
D
Y
V
L
E
R
L
A
E
K
G
Y
L
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
43.34
41%
-220
* C4 *
-
1BOU
-
PCYB_SPHPI
B:
[65-88]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
M
N
I
I
P
T
F
A
I
G
C
A
E
T
F
K
P
A
D
E
G
W
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
43.28
27%
10
- C2 -
-
3L85
-
NUDT5_HUMAN
A:
[69-118]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
R
P
P
M
G
G
Y
C
I
E
F
--
P
A
G
L
I
D
-------------
D
G
-
E
T
P
E
A
A
A
L
R
E
-----
L
E
E
E
T
G
Y
K
G
-
D
I
A
-
E
C
S
P
A
V
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
43.14
20%
-138
- C2 -
-
5DPL
-
?
A:
[458-492]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
D
M
I
G
I
-
P
I
H
E
K
Y
I
L
E
M
L
D
G
-
T
H
N
I
D
D
I
K
K
S
-----
I
I
E
K
I
---
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
42.50
27%
12
- C2 -
-
2DSB
-
NUDT5_HUMAN
A:
[82-131]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
R
P
P
M
G
G
Y
C
I
E
F
--
P
A
G
L
I
D
-------------
D
G
-
E
T
P
E
A
A
A
L
R
E
-----
L
E
E
E
T
G
Y
K
G
-
D
I
A
-
E
C
S
P
A
V
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
42.47
15%
-110
- C2 -
-
4WD9
-
NISB_LACLL
A:
[171-276]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
Y
-
T
N
V
Y
Q
I
I
S
E
F
C
E
N
D
Y
Q
K
Y
E
D
I
C
E
T
-----
V
T
L
C
Y
---
G
-
D
E
Y
---
R
E
L
S
E
Q
Y
L
G
S
L
I
V
N
H
Y
L
I
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
42.22
26%
-142
- C2 -
-
5DPD
-
Y789_RICPR
B:
[479-512]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
E
P
I
G
V
-
N
F
F
E
K
F
A
L
R
Y
M
D
G
-
R
N
D
K
K
A
I
I
E
A
-----
I
L
G
H
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
42.12
41%
-220
- C4 -
-
1B4U
-
PCYB_SPHPI
B:
[65-88]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
M
N
I
I
P
T
F
A
I
G
C
A
E
T
F
K
P
A
D
E
G
W
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
42.10
27%
12
- C2 -
-
3ACA
1
NUDT5_HUMAN
A:
[70-119]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
R
P
P
M
G
G
Y
C
I
E
F
--
P
A
G
L
I
D
-------------
D
G
-
E
T
P
E
A
A
A
L
R
E
-----
L
E
E
E
T
G
Y
K
G
-
D
I
A
-
E
C
S
P
A
V
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
42.09
17%
14
- C3 -
-
5UAO
1
?
A:
[21-539]
---------------------------------------------------------------------------------------------------------------------------PADDDPGAIR
T
V
G
V
I
G
GG
T
A
G
Y
L
T
A
L
A
L
K
A
K
RPWLD
V
A
L
V
E
S
ADIPIIGVGEATV
S
Y
M
V
M
F
L
H
HYLG
I
D
P
A
E
F
Y
Q
H
V
R
P
T
W
K
L
G
I
R
F
E
W
G
S
R
P
E
G
F
V
A
P
F
DW
G
T
G
S
V
G
L
-
V
G
S
L
R
E
T
G
-
N
V
N
E
-
A
T
L
Q
A
M
L
M
T
E
DRVPV
Y
R
G
E
G
---
G
-
H
V
S
-
L
M
K
Y
--
L
P
F
A
Y
H
M
D
N
A
R
L
V
R
Y
L
T
E
L
A
A
R
R
G
V
R
H
V
D
A
T
V
AEVRLDGPDHVG
G
L
I
T
TD
G
R
R
L
H
Y
D
F
Y
V
D
CTGFRSLLLEKALGI
P
F
E
S
YASSLFTD
A
A
V
T
G
T
L
A
HGGHLKP
Y
T
T
A
T
T
M
NA
G
W
C
W
T
I
P
T
PE
S
D
H
L
G
Y
V
F
S
SAAID
P
D
D
A
A
A
E
M
A
R
R
F
PG
V
T
R
E
A
L
V
R
F
R
S
G
R
H
REAWRGN
V
M
A
V
G
NSYAFVEPLESS
G
L
L
M
I
A
T
A
V
Q
I
L
V
S
L
LPSSRRDPLP
S
D
A
A
N
Q
A
L
A
H
R
W
D
A
I
R
W
F
L
S
I
H
Y
R
F
NGRLDT
P
F
W
K
E
A
R
A
ETDISGI
E
P
L
L
R
L
F
A
A
GAPLTGRD
S
F
T
R
Y
L
A
D
G
A
APLFYG
L
E
G
V
D
T
L
L
L
G
Q
EVPARLLPPREP
P
E
Q
W
R
A
R
A
A
A
A
R
S
L
A
S
R
GLR
Q
S
E
A
L
D
A
Y
A
A
D
P
C
L
N
A
E
L
L
SDSDSWAG
E
R
V
A
V
R
A
G
29
HHSearch
40.76
20%
-105
- C2 -
-
5DOO
-
?
A:
[458-497]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
D
M
I
G
I
-
P
I
H
E
K
Y
I
L
E
M
L
D
G
-
T
H
N
I
D
D
I
K
K
S
-----
I
I
E
K
I
---
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
40.73
27%
17
- C2 -
-
2DSD
1
NUDT5_HUMAN
A:
[84-133]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
R
P
P
M
G
G
Y
C
I
E
F
--
P
A
G
L
I
D
-------------
D
G
-
E
T
P
E
A
A
A
L
R
E
-----
L
E
E
E
T
G
Y
K
G
-
D
I
A
-
E
C
S
P
A
V
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
40.60
26%
-147
- C2 -
-
5DNK
-
Y789_RICPR
A:
[479-512]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
E
P
I
G
V
-
N
F
F
E
K
F
A
L
R
Y
M
D
G
-
R
N
D
K
K
A
I
I
E
A
-----
I
L
G
H
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------