@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VQJ6: (2017-11-27 )
MSLPHVLLTSLLERPSTGFELARRFDRSMGFFWNATHQQIYRELNNMLKKGWVSTLENEMDSGRKKTYQVEQLGRIELASWMTQQSEPAQLRDDLMVRLRAEAQLGNNQILPELLRHLGLHQEKLKLYQTIYDKDFKDSDDLNNRVLYIHKMILELGITMETEWIKWLEQVIPQLKLFAQDNVSGE
Atome Classification :
(20 SA)
.........10........20.......-.30.......-.40........50....-.-.-..60-....--.....70........80.......-.90.........100.......110.......120.....---..130.......140.......150.......160.......170.......180....
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MS
L
P
H
V
L
L
T
S
L
LERPST
G
F
E
L
A
R
R
F
D
R
S-MG
F
F
WN
A
T
H
Q
-
Q
I
Y
R
E
L
N
N
M
L
K
K
G
W
V
S
T
-
L
-
E
-
N
E
M
--
D
SGR--K
K
T
Y
Q
V
E
QLG
R
I
E
L
A
S
W
M
TQQS
E
P
-
A
Q
-
L
R
D
D
L
M
V
R
L
R
A
E
AQLGN
N
Q
I
L
P
E
L
L
R
H
LGL
H
Q
E
K
L
K
L
---
Y
Q
T
I
Y
DKDFKDSDDLNN
R
V
L
Y
I
H
K
M
I
L
E
LGITM
E
T
E
W
I
K
W
L
E
Q
V
I
P
Q
L
K
L
F
AQDNVSGE
45
Fugue
81.55
29%
-154
- C1 -
-
1YG2
-
?
A:
[2-179]
-
S
L
P
H
V
I
L
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V
L
S
T
R
D
A
T
G
Y
D
I
T
K
E
F
S
A
S
-
I
G
Y
F
W
K
A
S
H
Q
-
Q
V
Y
R
E
L
N
K
M
G
E
Q
G
L
V
T
C
-------------
V
--
L
E
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Y
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A
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A
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G
E
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D
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A
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-
P
T
-
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S
A
K
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A
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E
P
Y
R
L
Q
L
A
E
L
V
E
E
S
R
K
L
V
A
H
---
Y
Q
E
I
E
A
A
Y
Y
A
N
P
A
V
-
L
D
K
Q
Q
R
L
E
R
L
T
L
R
R
N
L
L
V
R
Q
A
W
I
Q
W
A
D
E
V
L
A
E
L
N
A
M
A
-------
24
HHSearch
81.47
29%
-163
- C1 -
-
1YG2
-
?
A:
[2-178]
-
S
L
P
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L
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Y
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-
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F
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-
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N
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G
L
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C
-
V
-
L
-
E
------------
V
Y
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A
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A
H
-
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-
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A
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M
A
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R
L
Q
L
A
E
L
V
E
E
S
R
K
L
V
A
H
---
Y
Q
E
I
E
A
A
Y
Y
A
N
P
A
V
L
-
D
K
Q
Q
R
L
E
R
L
T
L
R
R
N
L
L
V
R
Q
A
W
I
Q
W
A
D
E
V
L
A
E
L
N
A
M
--------
1
PsiBlast_PDB
75.99
32%
-101
- C1 -
-
1YG2
-
?
A:
[2-179]
-
S
L
P
H
V
I
L
T
V
L
S
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R
D
A
T
G
Y
D
I
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A
S
-
I
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A
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Q
-
Q
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N
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M
G
E
Q
G
L
V
T
C
V
L
-
E
--------------
V
Y
S
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T
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A
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A
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G
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D
Q
P
T
A
H
-
P
T
-
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E
F
S
A
K
L
M
A
---
C
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S
A
E
P
Y
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Q
L
A
E
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E
E
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L
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A
H
Y
Q
E
I
E
A
A
Y
Y
A
N
P
A
V
L
D
K
Q
-
Q
R
L
E
R
L
T
L
R
R
N
L
L
V
R
Q
A
W
I
Q
W
A
D
E
V
L
A
E
L
N
A
M
A
-------
25
HHSearch
56.65
18%
-28
- C1 -
-
3L9F
-
?
A:
[35-203]
M
Q
G
K
D
I
I
L
G
I
L
S
K
K
E
R
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Y
E
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-
L
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Y
F
Y
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Y
G
-
M
I
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P
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L
R
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E
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D
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T
K
-
E
-
V
-
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-
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N
--
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A
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L
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N
D
-
E
I
-
F
K
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D
F
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M
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F
F
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N
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L
N
D
D
D
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E
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L
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E
E
I
E
R
K
E
E
K
I
K
R
---
L
S
E
N
L
E
I
W
K
K
K
G
-----
E
L
T
P
T
Q
E
I
T
I
K
Y
G
L
A
Q
Y
K
S
T
K
K
V
L
E
E
E
L
A
-------------
44
Fugue
56.53
18%
-25
- C1 -
-
3L9F
-
?
A:
[35-204]
M
Q
G
K
D
I
I
L
G
I
L
S
K
K
E
R
S
G
Y
E
I
N
D
I
L
Q
N
Q
-
L
S
Y
F
Y
D
G
T
Y
G
-
M
I
Y
P
T
L
R
K
L
E
K
D
G
K
I
T
K
-
E
-
V
V
I
Q
D
--
G
R
P
N
--
K
N
I
Y
A
I
T
E
S
G
K
K
E
L
A
S
Y
L
Q
S
D
V
N
D
-
E
I
-
F
K
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F
L
M
R
L
F
F
G
N
S
L
N
D
D
D
L
E
Q
L
I
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E
E
I
E
R
K
E
E
K
I
K
R
---
L
S
E
N
L
E
I
W
K
K
K
G
E
L
T
-----
P
T
Q
E
I
T
I
K
Y
G
L
A
Q
Y
K
S
T
K
K
V
L
E
E
E
L
A
K
------------
2
PsiBlast_PDB
54.04
25%
-89
- C1 -
-
3L9F
-
?
A:
[35-134]
M
Q
G
K
D
I
I
L
G
I
L
S
K
K
E
R
S
G
Y
E
I
N
D
I
L
Q
N
Q
-
L
S
Y
F
Y
D
G
T
Y
G
-
M
I
Y
P
T
L
R
K
L
E
K
D
G
K
I
-
T
-
K
-
E
-
V
V
I
--
Q
D
G
R
P
N
K
N
I
Y
A
I
T
E
S
G
K
K
E
L
A
S
Y
L
Q
S
D
V
N
D
-
E
I
-
F
K
S
D
F
L
M
R
L
------------------------------------------------------------------------------------------
9
PsiBlast_PDB
47.11
24%
-132
- C1 -
-
3F6O
-
?
A:
[22-97]
-----
A
V
L
G
R
L
S
R
G
P
A
T
V
S
E
L
A
K
P
F
D
M
A
-
L
P
S
F
---------
M
K
H
I
H
F
L
E
D
S
G
W
I
R
T
-
H
-
K
-
Q
------
G
R
--
V
R
T
C
A
I
E
K
E
P
F
T
A
V
E
A
W
L
A
E
Q
Q
E
L
-
W
E
-
S
R
T
------------------------------------------------------------------------------------------------
34
HHSearch
46.78
19%
-126
- C1 -
-
2GXG
-
?
A:
[38-110]
--
L
D
F
L
V
L
R
A
T
S
D
G
P
K
T
M
A
Y
L
A
N
R
Y
---------
F
V
T
Q
S
-
A
I
T
A
S
V
D
K
L
E
E
M
G
L
V
V
R
-
V
-
R
-
D
R
---
E
D
R
R
--
K
I
L
I
E
I
T
E
K
G
L
E
T
F
N
K
G
I
E
I
-----------------------------------------------------------------------------------------------------------
41
HHSearch
45.72
20%
-102
- C1 -
-
3HHH
-
?
B:
[14-94]
--
L
E
G
L
V
L
A
I
I
Q
R
K
E
T
Y
G
Y
E
I
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K
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L
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D
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---
G
F
T
E
I
V
E
G
-
T
V
Y
T
I
L
L
R
L
E
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N
Q
W
V
I
A
-
E
-
K
-
K
P
S
E-
K
G
P
M
--
R
K
F
Y
R
L
T
S
S
G
E
A
E
L
A
D
F
W
Q
R
-----------------------------------------------------------------------------------------------------------
43
HHSearch
45.28
19%
-106
- C1 -
-
4ESB
4
?
A:
[9-89]
-
V
L
E
G
C
I
L
Y
I
I
S
Q
E
E
V
Y
G
Y
E
L
S
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K
L
N
K
H
---
G
F
T
F
V
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E
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-
S
I
Y
P
L
L
L
R
M
Q
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K
L
I
E
G
-
T
-
L
-
K
A
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S-
L
G
P
K
--
R
K
Y
Y
H
I
T
D
K
G
L
E
Q
L
E
E
F
K
Q
------------------------------------------------------------------------------------------------------------
33
HHSearch
45.15
19%
-125
- C1 -
-
3GFI
2
?
A:
[38-110]
--
L
D
F
L
V
L
R
A
T
S
D
G
P
K
T
M
A
Y
L
A
N
R
Y
---------
F
V
T
Q
S
-
A
I
T
A
S
V
D
K
L
E
E
M
G
L
V
V
R
-
V
-
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-
D
R
---
E
D
R
R
--
K
I
L
I
E
I
T
E
K
G
L
E
T
F
N
K
G
I
E
I
-----------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
45.12
29%
-32
- C1 -
-
2ESH
-
?
A:
[14-90]
--
L
A
S
T
I
L
L
L
V
A
E
K
P
S
H
G
Y
E
L
A
E
R
L
A
E
F
-
G
I
E
I
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G
I
G
H
M
G
N
I
Y
R
V
L
A
D
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E
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G
F
L
S
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-
E
-
W
-
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T
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--
V
S
P
P
--
R
K
I
Y
R
I
T
P
Q
G
K
L
Y
L
-----------------------------------------------------------------------------------------------------------------
35
HHSearch
44.99
27%
-28
- C1 -
-
2ESH
-
?
A:
[13-96]
-
W
L
A
S
T
I
L
L
L
V
A
E
K
P
S
H
G
Y
E
L
A
E
R
L
A
E
F
G
I
E
I
P
G
I
G
H
M
G
-
N
I
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V
L
A
D
L
E
E
S
G
F
L
S
T
-
E
-
W
-
D
T
T
--
V
S
P
P
--
R
K
I
Y
R
I
T
P
Q
G
K
L
Y
L
R
E
I
L
R
S
-----------------------------------------------------------------------------------------------------------
42
HHSearch
44.59
20%
-106
- C1 -
-
3HHH
1
?
A:
[14-94]
--
L
E
G
L
V
L
A
I
I
Q
R
K
E
T
Y
G
Y
E
I
T
K
I
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Q
---
G
F
T
E
I
V
E
G
-
T
V
Y
T
I
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N
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W
V
I
A
-
E
-
K
-
K
P
S
E---
P
M
--
R
K
F
Y
R
L
T
S
S
G
E
A
E
L
A
D
F
W
Q
R
-----------------------------------------------------------------------------------------------------------
30
HHSearch
43.84
13%
-127
- C1 -
-
2DQL
-
?
A:
[23-108]
--
A
I
C
Y
I
L
Y
V
L
L
Q
G
E
S
Y
G
T
E
L
I
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Q
L
E
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E
-
H
P
-
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Y
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D
T
-
V
L
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N
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A
I
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-
Y
-
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-
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L
E
G
R
G
R
P
--
R
R
M
Y
Q
V
S
P
E
W
Q
H
Q
A
E
D
L
A
R
L
W
Q
N
--------------------------------------------------------------------------------------------------------
31
HHSearch
43.50
14%
-120
- C1 -
-
3F8B
-
?
A:
[12-95]
-
Q
T
N
V
I
L
L
N
V
L
K
Q
G
D
N
Y
V
Y
G
I
I
K
Q
V
K
E
A
-
S
N
G
E
M
E
L
N
E
A
-
T
L
Y
T
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R
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E
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I
S
S
-
Y
-
W
-
G
D
-----
G
R
--
R
K
Y
Y
R
L
T
E
I
G
H
E
N
M
R
L
A
F
E
S
-----------------------------------------------------------------------------------------------------------
32
HHSearch
42.78
14%
-99
- C1 -
-
3F8B
-
?
B:
[12-95]
-
Q
T
N
V
I
L
L
N
V
L
K
Q
G
D
N
Y
V
Y
G
I
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Q
V
K
E
A
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E
M
E
L
N
E
A
-
T
L
Y
T
I
F
K
R
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E
K
D
G
I
I
S
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-
Y
-
W
-
G
D
E
S-
Q
G
G
R
--
R
K
Y
Y
R
L
T
E
I
G
H
E
N
M
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L
A
F
E
S
-----------------------------------------------------------------------------------------------------------
40
HHSearch
42.71
18%
-117
- C1 -
-
5DYM
-
?
A:
[20-101]
--
I
D
I
L
I
V
S
I
L
E
K
K
D
C
Y
G
Y
E
I
A
K
Q
V
R
E
R
-
S
E
--
F
-
L
K
E
G
-
T
M
Y
L
A
L
K
R
M
E
S
K
N
L
I
K
S
-
Y
-
Y
-
S
N
E
QS
S
G
G
R
--
R
K
Y
Y
N
L
T
N
E
G
K
D
F
L
E
I
K
K
Q
E
-----------------------------------------------------------------------------------------------------------
26
HHSearch
42.32
13%
-99
- C- -
-
2RKH
-
?
A:
[13-179]
--
V
R
L
C
A
L
G
T
I
A
S
Q
P
M
R
Y
S
E
L
A
G
S
V
R
H
F
-
T
S
R
I
M
G
P
S
L
E
-
L
M
G
I
S
I
E
L
L
R
Y
E
G
L
V
E
A
-
V
D--------------
A
M
L
A
I
S
A
A
G
R
R
E
L
H
S
L
L
T
A
R
L
R
P
G
S
D
L
S
K
L
V
V
A
L
K
M
R
F
L
G
L
M
E
A
E
E
R
A
H
Q
I
D
L
L
I
E
G
V
D
S
E
L
A
R
---
L
A
D
L
R
G
--
G
---
E
G
-----
G
S
A
L
A
A
W
L
D
H
D
M
A
L
L
E
S
R
L
A
W
L
E
D
F
R
A
R
L
-----------
39
HHSearch
40.85
14%
-113
- C1 -
-
5H20
2
?
A:
[15-94]
--
L
E
Y
C
I
M
L
L
L
H
K
E
P
A
Y
A
S
D
I
I
Q
K
L
K
E
A
----
R
L
I
V
V
E
G
-
T
L
Y
P
L
L
T
R
L
K
N
D
D
L
L
S
Y
-
E
-
W
-
V
E
S
T-
Q
G
P
P
--
R
K
Y
Y
K
L
T
G
K
G
E
S
F
L
G
E
L
E
A
S
-----------------------------------------------------------------------------------------------------------