@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VR61: (2017-12-01 )
MPIDTQLTTLFCLIDDFCTDITQNVEQYMLTYGQTKRLRQSKIHASEVITLLLWFHLTGSRNFKAFYLYWAKPFLCSYFTNLPSYSRFIELKAKYAMYFVALIESLKVHSAGIAFIDSTKLAVCHNKRIHQHRVFADSASRGKTSVDWFYGFKIHLICDHIGRLVSYCITTGNVDDRKVLPDLIEHSKLKGKLFGDRGYVGKNWKSRLAEVGVQLITRVKRNMKPQVLAPFDHAVLRKRGIIEAPFKLMKSQFDLEHSRHRSKMGLLTTIFAALTLYALVLVNGFVA
Atome Classification :
(20 SA)
---------------------------------------------....-.....10.-----....--...20........30---.--.......40--...----------......50.------------.......60.---.......70...-------.....80...---------------...----------------..90........100.......110--...--....120.......130.......140....--...150.---------......160--........170..-------..--...180..-------.....190---.-.-....------.200.......210-----.......220....--...230.......----240.......250.......260.-....------..270---....-....280.....-------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------MPID-TQ
L
T
T
L
F
C
-----
L
I
D
D
--
F
C
T
D
I
T
Q
N
V
E
Q
Y
M
L
T
---Y--G
Q
T
K
R
L
R
Q
---SKI----------
H
A
S
E
V
I
T
L
L
------------
L
W
F
HLTGSR
N
---
F
K
A
F
Y
L
Y
WA
K
P
F
-------
L
C
S
Y
F
TNLP
S
---------------
Y
S
R
----------------
F
I
E
L
K
A
K
Y
A
M
Y
F
V
A
L
I
E
S
L
KVHSA
G
--
I
A
F
--IDS
T
K
L
A
V
C
HNKRI
H
Q
H
R
VFADSASRGK
T
S
V
--
D
W
F
Y
G
F
K
---------
I
H
L
I
C
D
H
I
---
G
R
L
V
S
Y
C
ITTGNV-------D
D
--
R
K
V
L
P
D
L
I
-------
E
H
S
KLK
G
K
---
L
-F-GDRG------YVG
K
N
W
K
S
R
L
A
E
V
G
-----
V
Q
L
I
T
R
V
K
RNMKP
Q
--
V
LAPF
D
H
A
V
L
R
KR----GI
I
E
A
P
F
K
L
M
K
S
Q
FD
L
E
H
S
R
H
R
S
K-M
G
L
L
------
T
T
I
F
----
A
A
L
T
-
L
Y
A
L
V
L
VNGFVA-------------------------------------------
16
Fugue
64.32
16%
-15
- C3 -
-
5HC3
-
?
A:
[22-365]
MTNKIAEDPRID
P
R
I
K
A
I
FSGMDL
G
G
G
G
D
V
ES
R
E
A
M
L
E
A
A
S
S
E
E
A
T
A
V
R
-
D
G
L
R
V
F
L
D
-----
A
C
D
N
EE
I
A
P
S
A
G
L
K
I
E
D
Y
E
F
T
S
E
P
D
--
G
N
I
A
K
I
Q
Y
---
I
R
P
----------
D
S
T
D
K
L
P
C
V
------------
Y
Y
I
H
G
G
G
M
Q
S
LSC
Y
Y
G
N
Y
R
A
W
G
K
I
I
A
S
N
G
V
A
V
A
M
V
E
F
R
N
A
L
V
---------------
P
S
A
----------------
L
P
E
V
-
A
P
Y
P
A
G
L
N
D
C
V
S
G
V
K
W
V
A
A
H
--
A
D
E
LG
I
D
A
S
R
I
I
I
A
G
E
S
G
G
G
N
L
T
L
A
A
G
L
R
L
K
Q
E
G
S
Q
--
D
L
I
Q
G
-----------
L
Y
A
L
C
P
Y
I
---
A
G
S
W
P
S
E
D
S
P
S
S
T
-------
E
N
--
N
G
I
L
L
D
L
---------
H
N
N
Q
G
A
M
---
G
-
Y
-
G
I
E
A
------
Y
E
M
R
D
P
L
A
W
P
G
F
A
T
-----
E
E
D
V
S
----
G
L
V
P
T
--
F
I
S
V
N
E
C
D
P
L
R
D
E
----
G
I
-
N
F
Y
R
L
L
L
R
A
G
V
S
---
A
K
C
R
Q
V
-
M
G
T
I
HG----
T
E
I
F
PIAC
P
D
V
S
-
R
D
T
A
A
S
I
A
N
F
C
K
GG-----------------------------------------
21
Fugue
55.41
17%
-17
- C3 -
-
5GAP
-
PRP31_YEAST
F:
[43-457]
-PFEIL
P
E
S
I
E
L
F
R
T
L
ALISPD
R
L
S
L
S
E
T
A
Q
I
L
P
K
I
VD
L
K
R
I
L
Q
Q
Q
E
I
D
F
I
K
L
L
P
F
F
N
-----
E
I
I
P
--
L
I
K
S
N
I
K
L
M
H
N
F
L
I
S
---
L
Y
S
R
R
F
P
E
L
S
S
L
I
P
S
P
L
----------
Q
Y
S
K
V
I
S
I
L
E
NENYSKNESD
E
L
F
F
H
L
E
N
K
A
K
---
L
T
R
E
Q
I
L
V
L
T
M
S
-------
M
K
T
S
F
K
N
K
E
P
LD
I
K
T
R
T
Q
I
L
E
A
N
S
I
L
E
N
----------------
L
W
K
L
Q
E
D
I
G
Q
Y
I
A
S
K
I
S
I
I
---
A
P
N
--
V
C
F
--
L
V
G
P
E
I
A
A
Q
L
I
A
H
A
G
G
V
L
E
F
S
R
I
P
S
C
N
I
A
S
I
GK
N
K
H
L
S
H
E
---------
L
H
T
L
E
S
G
V
RQE
G
Y
L
F
A
S
D
M
I
Q
K
F
P
-------
V
S
V
H
K
Q
M
L
R
M
L
C
-------
A
K
V
S
L
A
A
R
---
V
-
D
-
A
G
Q
K
NGDRNT
V
L
A
H
K
W
K
A
E
L
S
K
K
A
-----
R
K
L
S
E
A
P
S
I
S
E
T
K
A
--
L
P
I
P
E
D
Q
P
K
K
K
R
A
----
G
---
R
K
F
R
K
Y
K
E
K
F
R
L
S
H
V
R
Q
L
Q
N
R
M
E
F
G
------
K
Q
E
Q
----
T
V
L
D
-
S
Y
G
E
E
V
G
L
G
M
S
N
T
S
L
Q
Q
A
V
GATSGSRRSAGNQ
A
K
L
T
K
V
M
K
H
R
I
S
E
A
N
Q
Q
A
D
E
F
L
I
17
Fugue
46.68
17%
-72
- C3 -
-
5LSJ
-
PMF1_HUMAN
B:
[2-174]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
S
R
V
K
L
L
D
T
M
--
V
D
T
--
F
L
Q
K
L
V
A
A
G
S
Y
Q
R
F
T
D
C
--
Y
K
C
F
Y
Q
L
Q
P
A
M
T
--
Q
Q
I
Y
D
K
F
---------
I
A
Q
L
Q
T
S
I
---
R
E
E
I
S
D
I
K
E
E
G
N
L
-------
E
A
V
-
L
N
A
L
D
K
I
V
-------
E
E
G
K
V
R
K
E
---
P
A
W
-
R
P
S
G
------
I
P
E
K
D
L
H
S
V
M
A
P
Y
F
-----
L
Q
Q
R
D
T
L
R
R
H
V
Q
K
Q
E
A
E
N
Q
Q
L
A
D
A
V
L
A
G
R
----
R
Q
V
E
E
L
Q
L
Q
V
Q
A
Q
Q
Q
A
W
Q
A
L
H
R
E
Q
-
R
E
L
V
------
A
V
L
R
----
E
-----------------------------------------------------------
5
PsiBlast_PDB
41.84
25%
-105
- C2 -
-
3SN6
-
GNAS2_BOVIN
A:
[114-212]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
Y
I
L
S
V
M
N
V
-------
P
D
--
F
D
F
P
P
E
F
Y
-------
E
H
A
K
A
L
W
E
---
D
-
E
-
G
V
R
A
------
C
Y
E
R
S
N
E
Y
Q
L
I
D
C
A
-----
Q
Y
F
L
D
K
I
D
V
-
I
K
Q
D
--
D
Y
V
P
S
D
Q
D
L
L
R
C
R
VS--
G
I
F
E
T
K
F
Q
V
D
K
V
N
F
-----------------------------------------------------------------------------------------
12
HHSearch
41.12
13%
-259
- C1 -
-
1OGD
1
RBSD_BACSU
B:
[21-36]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
K
I
---
V
-
I
-
A
D
A
G
------
L
P
V
P
D
G
-----------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
38.94
13%
-230
- C1 -
-
1OGC
-
RBSD_BACSU
B:
[21-36]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
K
I
---
V
-
I
-
A
D
A
G
------
L
P
V
P
D
G
-----------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
36.92
25%
-135
- C2 -
-
1CUL
1
GNAS2_BOVIN
C:
[114-205]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
Y
I
L
S
V
M
N
V
-------
P
D
--
F
D
F
P
P
E
F
Y
-------
E
H
A
K
A
L
W
E
---
D
-
E
-
G
V
R
A
------
C
Y
E
R
S
N
E
Y
Q
L
I
D
C
A
-----
Q
Y
F
L
D
K
I
D
V
-
I
K
Q
D
--
D
Y
V
P
S
D
Q
D
L
L
R
C
R
V
L
T
S
G
I
F
E
T
K
F
Q
V
D
K
V
N
F
-----------------------------------------------------------------------------------------
22
Fugue
34.25
23%
28
- C3 -
-
5TDY
-
FLIG_THEMA
B:
[4-98]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
I
D
-------
G
R
--
R
K
A
A
V
L
L
V
-------
A
L
G
P
E
K
A
A
---
Q
-
V
M
K
H
L
D
----------
E
E
T
V
E
Q
L
V
V
E
-----
I
A
N
I
G
R
V
T
P
E
E
K
K
Q
--
V
L
E
E
F
L
S
L
A
K
A
K
E
M
I
S
E
G
G
I
E
Y
A
K
K
V
L
E
K
A
F
G
P
E
R
A
R
K
I
I
E
-
R
-----------------------------------------------------------------------------
3
PsiBlast_PDB
33.41
29%
-56
- C2 -
-
2Q1T
1
?
A:
[26-99]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
S
K
L
A
N
T
N
V
M
V
-
V
-
G
G
A
G
------
F
V
G
S
N
L
V
K
R
L
L
E
L
G
-----
V
N
Q
V
H
V
V
D
N
L
L
S
A
E
--
K
I
N
V
P
D
H
P
A
V
R
-------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
33.33
29%
-69
- C2 -
-
2PZJ
1
?
A:
[28-99]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
L
A
N
T
N
V
M
V
-
V
-
G
G
A
G
------
F
V
G
S
N
L
V
K
R
L
L
E
L
G
-----
V
N
Q
V
H
V
V
D
N
L
L
S
A
E
--
K
I
N
V
P
D
H
P
A
V
R
-------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
32.70
29%
-63
- C2 -
-
2Q1U
1
?
A:
[26-95]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
S
K
L
A
N
T
N
V
M
V
-
V
-
G
G
A
G
------
F
V
G
S
N
L
V
K
R
L
L
E
L
G
-----
V
N
Q
V
H
V
V
D
N
L
L
S
A
E
--
K
I
N
V
P
D
H
P
A
V
R
-------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
31.47
29%
-62
- C2 -
-
2Q1S
1
?
A:
[26-96]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
S
K
L
A
N
T
N
V
M
V
-
V
-
G
G
A
G
------
F
V
G
S
N
L
V
K
R
L
L
E
L
G
-----
V
N
Q
V
H
V
V
D
N
L
L
S
A
E
--
K
I
N
V
P
D
H
P
A
V
R
-------------------------------------------------------------------------------------------------------------
9
HHSearch
31.26
7%
-87
* C1 *
-
4HLB
-
?
A:
[35-62]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-
Y
-
A
D
K
G
------
I
R
S
V
D
V
A
A
Y
A
K
G
I
D
-----
I
V
F
V
A
A
D
R
--------------------------------------------------------------------------------------------------------------------------------
24
Fugue
28.94
15%
-245
- C3 -
-
2E74
1
PETL_MASLA
E:
[1-32]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
L
G
A
V
F
Y
I
V
F
I
A
L
F
F
G
I
A
V
G
--
I
I
F
--
A
I
K
S
I
K
L
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
28.49
15%
-243
* C3 *
-
4H13
1
PETL_MASLA
E:
[1-32]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
L
G
A
V
F
Y
I
V
F
I
A
L
F
F
G
I
A
V
G
--
I
I
F
--
A
I
K
S
I
K
L
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
26.59
6%
8
- C3 -
-
2EUA
1
MENF_ECOLI
A:
[2-429]
---Q
S
L
T
T
A
L
E
N
L
L
R
H
L
S
QEIPA
T
P
G
I
R
V
I
D
I
P
F
P
LKDAFD
A
L
S
W
L
A
S
Q
-
Q
T
Y
P
Q
F
Y
W
Q
Q
RNG
D
E
E
A
--
V
V
L
G
A
I
T
R
F
T
S
L
D
Q
A
---
Q
--
R
F
L
R
Q
H
P
E
---
H
A
D
L
R
I
W
G
L
N
A
FD
P
S
Q
G
N
L
L
L
P
------------
R
L
E
W
R
R
C
G
G
K
---
A
T
L
R
L
T
L
F
S
E
S
S
-------
L
Q
H
D
A
I
Q
A
K
E
---------------
F
I
A
T
LVSI
K
P
L
P
G
L
HLTTT
R
E
Q
H
W
P
D
K
T
G
W
T
Q
L
I
E
L
A
T
K
T
I
A
E
G
EL
D
K
V
--
V
L
A
R
A
T
D
L
H
F
A
S
P
V
N
A
A
A
M
M
A
A
S
R
R
L
N
L
N
C
Y
--
H
F
Y
M
A
F
D
GE
N
A
F
L
GSS
P
E
R
L
W
R
R
R
---
D
K
A
L
R
T
E
A
L
A
G
T
V
A
N
N
PD
D
K
Q
A
--
Q
Q
L
G
E
W
L
M
A
D
D
K
N
Q
R
E
N
M
L
V
V
E
D
---
I
-
C
-
Q
R
L
Q
------
A
D
T
Q
T
L
D
V
L
P
P
Q
V
L
R
L
RK
V
Q
H
L
R
R
C
I
W
T
S
L
N
K
A
--
D
D
V
I
C
L
H
Q
L
Q
P
T
A
----
A
V
A
G
L
P
R
D
L
A
R
Q
F
I
A
R
H
E
P
F
T
R
E
W
-
Y
A
G
S
A
G
Y
L
S
L
Q
Q
S
E
----
F
C
V
S
-
L
R
S
A
K
I
S
G
N
V
V
R
L
Y
A
G
A
G
I
V
RGSD
P
E
Q
E
W
Q
E
I
D
N
K
A
A
G
L
R
T
L
L
Q-----------
8
HHSearch
15.06
19%
0
- C- -
-
4DM0
-
TN5P_ECOLX
A:
[317-380]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
Y
T
H
R
----
W
R
I
E
E
F
H
K
A
W
K
T
G
A
G
A
E
R
Q
R
M
E
K
P
-
D
N
L
E
------
R
M
V
S
----
I
L
S
F
V
A
V
R
L
L
Q
-------------------------------------------------
7
HHSearch
15.06
19%
0
- C- -
-
1MUS
1
TN5P_ECOLX
A:
[317-381]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
Y
T
H
R
----
W
R
I
E
E
F
H
K
A
W
K
T
G
A
G
A
E
R
Q
R
M
E
K
P
-
D
N
L
E
------
R
M
V
S
----
I
L
S
F
V
A
V
R
L
L
Q
-------------------------------------------------
18
Fugue
11.90
29%
0
- C- -
-
1VF5
-
PETL_MASLA
E:
[1-32]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
L
G
A
V
F
Y
I
V
F
I
A
L
F
F
G
I
A
V
G
--
I
I
F
A
-
I
K
S
I
K
L
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
11.15
22%
-
* C2 *
-
4FW1
-
B:
[114-142]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
P
K
A
---
I
-
K
-
T
D
N
G
DA----
F
T
S
K
S
T
R
E
W
L
A
R
W
G
-----
I
A
H
-------------------------------------------------------------------------------------------------------------------------------------