@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VR84: (2017-12-01 )
MGSMNAIPQTFEFWQDRRMPYVETRRSCFGRTCYKSHSHPTFSIGAIDEGNSVFQSSFGTAQKITAGTLVIVPAYVEHSCNPMPNQAWSYQMLHLDLAWLNQLYSEFQEQGLDLHIPQHKPLIIKDESLYETFTEMNETLFDAQKLIFEKEQALLHCLIHLLLPHFILEEIQKPQYLYKDFLNLIDVISSSEGFISLEELAQRVGLSRYAIIRLFKANVGLTPHAFQINLKINQAREQLKQGVPLAELAVNLGFNDQSHFHKAFKAHTGVTPRQFQLAAAQ
Atome Classification :
(20 SA)
-------------------------------------------------------------------.........10......-.------.20...-.....30........40........50.-......--.60........70........80....--....90......-..100.....---..110.......120-...--....-------------------------..130.....--------..140.......150.......160.......170..-...---..180......-.190..-.-.-.....200.......210.......220.......230.......-240---.---..-..-...250.......260.......270.......280--------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------MGSMNAI
P
Q
T
F
E
F
W
Q
DR-R------M
P
Y
V
E
T
-
R
R
S
C
FG
R
T
C
Y
KSHSHP
T
F
S
I
GAIDEG
N
S
-
V
F
Q
S
SF--GTAQKITA
G
T
L
V
I
V
P
A
Y
V
EHSCNPMPN--QA
W
S
Y
Q
M
L
H
L
D
L
-
A
W
L
N
Q
L
Y
S
E
F
---
Q
EQGL
D
L
HIPQHK---
P
L
I
--
I
K
D
E
-------------------------
S
L
Y
E
T
F
T
E
M
N
--------
E
T
L
F
D
A
Q
K
L
I
F
E
K
E
Q
A
L
L
H
C
L
I
H
L
L
L
P
H
F
I
L
E
E
IQK
P
-
Q
Y
L
---
Y
K
D
F
L
N
L
I
D
V
I-SS--SE-G-F-
I
S
L
E
E
L
A
Q
R
VG
L
S
R
Y
A
I
I
R
L
F
KANVGLTP
H
A
F
Q
I
N
L
K
I
N
Q
A
R
E
Q
L
-
K
-Q---G---V
P
-
L
A
-
E
L
A
V
NLGFN
D
Q
S
H
F
H
K
A
F
K
AHTGV
T
P
R
Q
F
Q
LAAAQ---------
28
Fugue
67.47
12%
20
- C1 -
-
5CHH
-
?
A:
[4-328]
----------------------------------------------E
N
I
Q
Y
DFE
W
R
P
L
N
N
Y
L
A
V
Q
RI
T
P
P
R
L
P
S
E
A
L
Y
E
W
I
V
L
N
-
G
RS
P
L
E
G
L
S
L
G
E
H
Y
R
L
S
D
Y
G
V
A
G
L
A
L
Q
S
A
G
T
V
G
E
A
L
Q
L
I
K
T
N
M
L
L
F
R
K
D
--
I
R
G
I
A
V
R
R
S
S
C
D
T
V
D
V
D
I
D
L
Q
D
K
P
D
W
P
--
Q
S
A
R
L
Y
H
A
N
V
L
A
-
S
A
A
Y
A
V
F
R
D
L
LLG
E
L
E
L
V
R
L
R
L
P
E
R
N
---
G
D
V
--
R
A
Y
E
-------------------------
E
Y
F
R
V
P
V
Y
F
A
G
A
G
I
T
F
T
L
P
E
E
L
L
E
A
E
I
A
T
A
N
S
A
V
F
Q
A
S
L
A
L
G
--
S
K
A
F
N
T
R
V
T
R
E
M
G
G
Y
---
R
Q
R
I
V
A
L
L
E
V
---
L
--
Q
D
-
R
-
Y
-
P
S
I
A
W
V
A
R
Q
L
K
V
T
E
R
T
L
R
R
R
L
A
D
E
-
G
T
N
Y
R
E
V
L
D
L
V
R
H
D
R
A
R
Q
L
L
-
R
D
E
---
R
---
L
R
-
I
E
-
E
V
A
E
R
L
G
Y
M
D
T
S
S
F
R
H
A
F
R
R
W
T
G
Q
C
A
N
D
Y
R
Q
A
------------
35
HHSearch
62.59
27%
-16
- C1 -
-
2K9S
-
A:
[3-106]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
R
V
R
E
A
C
Q
Y
I
S
D
H
--
L
A
-
D
S
N
-
F
D
I
A
S
V
A
Q
H
V
C
L
S
P
S
R
L
S
H
L
F
R
Q
Q
L
G
I
S
V
L
S
W
R
E
D
Q
R
I
S
Q
A
K
L
L
L
-
S
-
T
T
--
R
---
M
P
-
I
A
-
T
V
G
R
N
V
G
F
D
D
Q
L
Y
F
S
R
V
F
K
K
C
T
G
A
S
P
S
E
F
R
A
G
C
-----------
36
HHSearch
62.43
27%
30
- C1 -
-
3OIO
-
?
A:
[5-110]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
---
Q
P
K
L
T
E
A
V
S
L
M
E
A
N
--
I
E
-
E
-
P
-
L
S
T
D
D
I
A
Y
Y
V
G
V
S
R
R
Q
L
E
R
L
F
K
Q
Y
L
G
T
V
P
S
K
Y
Y
L
E
L
R
L
N
R
A
R
Q
L
L
-
Q
-
Q
T--
S
---
K
S
-
I
V
-
Q
I
G
L
A
C
G
F
S
S
G
P
H
F
S
S
T
Y
R
N
H
F
N
I
T
P
R
E
E
R
A
Q
R
A
----------
38
HHSearch
62.02
22%
-4
- C1 -
-
3MN2
-
?
A:
[2-107]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
V
R
Q
V
E
E
Y
I
E
A
N
--
W
M
-
R
-
P
-
I
T
I
E
K
L
T
A
L
T
G
I
S
S
R
G
I
F
K
A
F
Q
R
S
R
G
Y
S
P
M
A
F
A
K
R
V
R
L
Q
H
A
H
N
L
L
-
S
-
D
GAT
P
---
T
T
-
V
T
-
A
A
A
L
S
C
G
F
S
N
L
G
H
F
A
R
D
Y
R
D
M
F
G
E
K
P
S
E
T
L
Q
R
A
R
----------
22
Fugue
62.02
25%
-1
- C1 -
-
1BL0
2
MARA_ECOLI
A:
[9-124]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
A
I
T
---
I
H
S
I
L
D
W
I
E
---
D
N
--
L
E
-
S
-
P
-
L
S
L
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
K
K
E
T
G
H
S
L
G
Q
Y
I
R
S
R
K
M
T
E
I
A
Q
K
L
-
K
-
E
S--
N
---
E
P
-
I
L
-
Y
L
A
E
R
Y
G
F
E
S
Q
Q
T
L
T
R
T
F
K
N
Y
F
D
V
P
P
H
K
Y
R
M
T
N
M
Q
GESRFLHPL
27
Fugue
60.32
16%
6
- C1 -
-
4FE7
1
XYLR_ECOLI
A:
[21-409]
MFT
K
R
H
R
I
T
L
L
F
N
ANK
A
Y
D
R
Q
V
V
E
G
V
G
E
Y
L
Q
A
S
QSEWDIFIEEFRWLGD
G
V
I
A
DFDD
K
Q
I
E
Q
A
L
ADV
D
V
P
I
V
G
V
G
G
S
Y
H
L
A
E
S
Y
P
P
------
V
H
Y
I
A
T
-
D
N
Y
A
L
V
E
S
A
F
L
H
L
K
E
K
G
V
N
R
F
A
F
Y
G
L
P
E
-
S
S
G
K
R
W
--
A
T
E
R
E
Y
A
F
R
Q
L
V
A
E
E
K
Y
R
G
V
V
Y
Q
G
L
E
T
--
A
P
E
N
W
Q
H
A
Q
N
R
L
A
D
W
L
Q
T
L
P
P
Q
T
---
G
I
I
A
V
T
D
A
R
A
R
H
I
---
L
Q
V
--
C
E
H
L
HIPVPEK
L
C
V
I
G
I
DNEELTRYLSRV
A
L
S
S
V
A
Q
G
A
R
--------
Q
M
G
Y
Q
A
A
K
L
L
H
R
L
L
D
K
E
E
M
P
L
Q
R
I
L
V
P
P
V
R
V
I
E
R
R
S
T
-
D
Y
R
SLT
D
P
A
V
I
Q
A
M
H
Y
I
-
R
N
--
H
A
-
C
-
K
G
I
K
V
D
Q
V
L
D
A
V
G
I
S
R
S
N
L
E
K
R
F
K
E
E
V
G
E
T
I
H
A
M
I
H
A
E
K
L
E
K
A
R
S
L
L
-
I
-
S
T--
T
---
L
S
-
I
N
-
E
I
S
Q
M
C
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
A
Y
D
T
T
P
K
E
Y
R
D
V
N
S
E
---------
1
PsiBlast_PDB
59.74
31%
-24
- C1 -
-
3OIO
-
?
A:
[24-111]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
T
D
D
I
A
Y
Y
V
G
V
S
R
R
Q
L
E
R
L
F
K
Q
Y
L
G
T
V
P
S
K
Y
Y
L
E
L
R
L
N
R
A
R
Q
L
L
-
Q
-
Q
T--
S
---
K
S
-
I
V
-
Q
I
G
L
A
C
G
F
S
S
G
P
H
F
S
S
T
Y
R
N
H
F
N
I
T
P
R
E
E
R
A
Q
R
A
Q
---------
20
PsiBlast_PDB
58.33
25%
-76
- C1 -
-
3MN2
-
?
A:
[19-101]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
I
E
K
L
T
A
L
T
G
I
S
S
R
G
I
F
K
A
F
Q
R
S
R
G
Y
S
P
M
A
F
A
K
R
V
R
L
Q
H
A
H
N
L
L
-
S
-
D
---
G
ATP
T
T
-
V
T
-
A
A
A
L
S
C
G
F
S
N
L
G
H
F
A
R
D
Y
R
D
M
F
G
E
K
P
S
E
----------------
41
HHSearch
56.58
23%
19
- C1 -
-
3LSG
-
?
A:
[3-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
E
L
I
Q
N
I
I
E
E
S
--
Y
T
D
S
-
Q
-
F
T
L
S
V
L
S
E
K
L
D
L
S
S
G
Y
L
S
I
M
F
K
K
N
F
G
I
P
F
Q
D
Y
L
L
Q
K
R
M
E
K
A
K
L
L
L
-
L
-
T
T
--
E
---
L
K
-
N
Y
-
E
I
A
E
Q
V
G
F
E
D
V
N
Y
F
I
T
K
F
K
K
Y
Y
Q
I
T
P
K
Q
Y
R
E
-------------
29
HHSearch
55.10
9%
-12
- C1 -
-
5SUW
3
TCPN_VIBC3
A:
[17-271]
-------------------------------------------------------------------------------------------------------
F
D
T
Y
I
F
N
N
L
Y
I
N
D
Y
K
M
F
W
I
D
S
G
I
A
-
K
L
I
D
K
N
CL
V
-
S
Y
E
I
N
S
S
S
I
I
L
L
K
K
N
S
I
Q
R
F
S
L
T
S
L
SD
E
N
I
N
V
S
V
I
T
I
S
D
-
S
F
I
R
S
L
K
S
Y
I
---
L
G
D
L
M
--
I
R
N
L
Y
S
ENK
D
L
L
L
W
N
C
E
H
-------------------------
N
D
I
A
V
L
S
E
V
V
--------
N
G
F
R
E
I
N
Y
S
D
E
F
L
K
V
F
F
S
G
F
F
S
K
V
E
K
K
Y
N
S
----
I
F
I
-
T
D
D
---
L
D
A
M
E
K
I
S
C
L
V
K
S
D
--
I
T
-
R
-
N
-
W
R
W
A
D
I
C
G
E
L
R
T
N
R
M
I
L
K
K
E
L
E
-
S
R
G
V
K
F
R
E
L
I
N
S
I
R
I
S
Y
S
I
S
L
M
-
K
-
T
G--
E
---
F
K
-
I
K
-
Q
I
A
Y
Q
S
G
F
A
S
V
S
Y
F
S
T
V
F
K
S
T
M
N
V
A
P
S
E
Y
L
F
M
L
T
----------
6
PsiBlast_PDB
54.45
28%
47
- C1 -
-
3OOU
-
?
A:
[9-104]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
L
S
Y
I
-
T
E
HF
S
E
-
G
---
M
S
L
K
T
L
G
N
D
F
H
I
N
A
V
Y
L
G
Q
L
F
Q
K
E
M
G
E
H
F
T
D
Y
L
N
R
Y
R
V
N
Y
A
K
E
E
L
-
L
-
Q
---
T
---
K
D
N
L
T
-
I
I
A
G
K
S
G
Y
T
D
M
A
Y
F
Y
R
Q
F
K
K
H
T
G
E
T
P
N
R
Y
R
--------------
7
PsiBlast_PDB
52.84
27%
-25
- C1 -
-
4FE4
-
XYLR_ECOLI
A:
[302-384]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
V
D
Q
V
L
D
A
V
G
I
S
R
S
N
L
E
K
R
F
K
E
E
V
G
E
T
I
H
A
M
I
H
A
E
K
L
E
K
A
R
S
L
L
I
S
-
T
---
T
---
L
S
-
I
N
-
E
I
S
Q
M
C
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
A
Y
D
T
T
P
K
E
Y
R
--------------
8
PsiBlast_PDB
52.73
27%
-8
- C1 -
-
4FE7
-
XYLR_ECOLI
A:
[322-404]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
V
D
Q
V
L
D
A
V
G
I
S
R
S
N
L
E
K
R
F
K
E
E
V
G
E
T
I
H
A
M
I
H
A
E
K
L
E
K
A
R
S
L
L
I
S
-
T
---
T
---
L
S
-
I
N
-
E
I
S
Q
M
C
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
A
Y
D
T
T
P
K
E
Y
R
--------------
37
HHSearch
52.32
25%
59
- C1 -
-
3OOU
1
?
A:
[4-107]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
I
I
Q
N
V
L
S
Y
I
T
E
H
--
F
S
-
E
-
G
-
M
S
L
K
T
L
G
N
D
F
H
I
N
A
V
Y
L
G
Q
L
F
Q
K
E
M
G
E
H
F
T
D
Y
L
N
R
Y
R
V
N
Y
A
K
E
E
L
-
L
-
Q
T
--
K
---
D
N
-
L
T
-
I
I
A
G
K
S
G
Y
T
D
M
A
Y
F
Y
R
Q
F
K
K
H
T
G
E
T
P
N
R
Y
R
K
I
H
-----------
30
HHSearch
52.16
9%
-21
- C1 -
-
4MLO
1
?
A:
[17-271]
-------------------------------------------------------------------------------------------------------
F
D
T
Y
I
F
N
N
L
Y
I
N
D
Y
K
M
F
W
I
D
S
G
I
A
-
K
L
I
D
K
N
CL
V
-
S
Y
E
I
N
S
S
S
I
I
L
L
K
K
N
S
I
Q
R
F
S
L
T
S
L
SD
E
N
I
N
V
S
V
I
T
I
S
D
-
S
F
I
R
S
L
K
S
Y
I
---
L
G
D
L
M
--
I
R
N
L
Y
S
ENK
D
L
L
L
W
N
C
E
H
-------------------------
N
D
I
A
V
L
S
E
V
V
--------
N
-
F
R
E
I
N
Y
S
D
E
F
L
K
V
F
F
S
G
F
F
S
K
V
E
K
K
Y
N
S
----
I
F
I
-
T
D
D
---
L
D
A
M
E
K
I
S
C
L
V
K
S
D
--
I
T
-
R
-
N
-
W
R
W
A
D
I
C
G
E
L
R
T
N
R
M
I
L
K
K
E
L
E
-
S
R
G
V
K
F
R
E
L
I
N
S
I
R
I
S
Y
S
I
S
L
M
-
K
-
T
G--
E
---
F
K
-
I
K
-
Q
I
A
Y
Q
S
G
F
A
S
V
S
Y
F
S
T
V
F
K
S
T
M
N
V
A
P
S
E
Y
L
F
M
L
T
----------
34
HHSearch
51.42
21%
16
* C1 *
-
3W6V
2
?
A:
[37-141]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
P
L
A
E
V
V
A
W
A
L
E
H
--
L
H
-
E
-
Q
-
F
D
V
E
T
L
A
A
R
A
Y
M
S
R
R
T
F
D
R
R
F
R
S
L
T
G
S
A
P
L
Q
W
L
I
T
Q
R
V
L
Q
A
Q
R
L
L
-
E
-
T
S--
D
---
Y
S
-
V
D
-
E
V
A
G
R
C
G
F
R
S
P
V
A
L
R
G
H
F
R
R
Q
L
G
S
S
P
A
A
Y
R
A
A
Y
R
----------
46
HHSearch
51.39
22%
32
- C1 -
-
1D5Y
2
ROB_ECOLI
A:
[3-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
I
R
D
L
L
I
W
L
E
G
H
--
L
D
-
Q
-
P
-
L
S
L
D
N
V
A
A
K
A
G
Y
S
K
W
H
L
Q
R
M
F
K
D
V
T
G
H
A
I
G
A
Y
I
R
A
R
R
L
S
K
S
A
V
A
L
-
R
-
L
T
--
A
---
R
P
-
I
L
-
D
I
A
L
Q
Y
R
F
D
S
Q
Q
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
L
Y
R
R
S
P
-----------
2
PsiBlast_PDB
51.32
32%
12
- C1 -
-
2K9S
-
A:
[23-103]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
S
V
A
Q
H
V
C
L
S
P
S
R
L
S
H
L
F
R
Q
Q
L
G
I
S
V
L
S
W
R
E
D
Q
R
I
S
Q
A
K
L
L
L
-
S
-
T
---
T
R--
M
P
-
I
A
-
T
V
G
R
N
V
G
F
D
D
Q
L
Y
F
S
R
V
F
K
K
C
T
G
A
S
P
S
E
F
R
--------------
12
PsiBlast_PDB
50.33
24%
8
- C1 -
-
3LSG
-
?
A:
[14-102]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Y
--
T
D
-
S
-
Q
-
F
T
L
S
V
L
S
E
K
L
D
L
S
S
G
Y
L
S
I
M
F
K
K
N
F
G
I
P
F
Q
D
Y
L
L
Q
K
R
M
E
K
A
K
L
L
L
-
L
-
T
---
T
---
E
L
-
K
N
Y
E
I
A
E
Q
V
G
F
E
D
V
N
Y
F
I
T
K
F
K
K
Y
Y
Q
I
T
P
K
Q
Y
R
--------------
32
HHSearch
50.20
23%
32
- C1 -
-
4FE7
-
XYLR_ECOLI
A:
[303-408]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
---
D
P
A
V
I
Q
A
M
H
Y
I
R
N
H
--
A
C
-
K
-
G
-
I
K
V
D
Q
V
L
D
A
V
G
I
S
R
S
N
L
E
K
R
F
K
E
E
V
G
E
T
I
H
A
M
I
H
A
E
K
L
E
K
A
R
S
L
L
-
I
-
S
T--
T
---
L
S
-
I
N
-
E
I
S
Q
M
C
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
A
Y
D
T
T
P
K
E
Y
R
D
V
N
S
----------