@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VRG2: (2017-12-02 )
MKIFSLIAFAVCLSLQGCMQHESIAHEHRPHDRGTLVSQTHNFYQISNDVFRSEQPDAAMIPELKHHQIGTIINLRAKASDDLVFKNENFNLIHIPINTWAIDRQDLLEVMQQIQLAKQNNQRVLLHCYHGSDRTGASVSMYRIIFENWVIDDAVKEMKQGGYGYHIIWKNIDRLFTPENVKWIQQQLSNPS
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30..---------......40....-....50.....-...60...-.....70.......---.---80.----------.---......90......--..100-.--.-----.-.....110.---.....-----..120........130.......140.......150.......160.......170.-......180.......190----------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------M
K
I
F
S
L
I
A
F
A
V
C
L
S
L
Q
G
C
M
Q
H
E
S
I
A
H
EHRPHDR---------G
T
L
VSQTH
N
F
Y
Q-I
S
N
D
V
FRSEQP-DAAMIPEL-KHHQI
G
T
I
I
N
L
R
AK---A---SD
D
----------
L
---
V
F
KNEN
F
N
L
I
H
I
PI--N
T
W
A--I--
D
-----
R
-
Q
D
L
L
E
V
M
-
Q
---
Q
I
Q
L
A
-----KQN-N
Q
R
V
L
L
H
C
YHGSDRTGA
S
V
S
M
Y
R
I
I
F
ENW
V
I
D
D
A
V
K
E
M
K
QGGY
G
Y
H
I
I
WKN
I
D
-
R
LFTP
E
N
V
K
W
I
Q
Q
Q
LSNPS----------------------
23
Fugue
72.86
24%
-72
- C1 -
-
2M3V
-
?
A:
[26-218]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
G
H
M
A
E
T
A
A
P
R
S
P
A
W
---------
A
Q
A
V
D
P
S
I
N
L
Y
R
-
M
S
P
T
L
Y
R
S
A
L
P
-
N
A
Q
S
V
A
L
L
-
Q
R
L
Q
V
K
T
V
V
S
F
I
K
D
---
D
---
D
R
A
----------
W
---
L
-
G
Q
A
P
V
R
V
V
S
L
P
T
--
H
A
D
R
--
V
--
D
-----
D
-
A
E
V
L
S
V
L
-
R
---
Q
L
Q
A
A
-----
E
R
E
-
G
-
P
V
L
M
H
C
K
H
G
N
N
R
T
G
L
F
A
A
M
Y
R
I
V
V
Q
G
W
D
K
Q
A
A
L
E
E
M
Q
R
G
G
F
G
D
E
D
D
M
R
D
A
S
-
A
Y
V
R
G
A
D
V
D
G
L
R
L
A
M
A
N
G
E
CSPSRFALCHVREWMAQALDRP
33
HHSearch
72.09
24%
-124
- C1 -
-
4R0S
-
?
A:
[34-192]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
S
P
A
W
---------
A
Q
A
V
D
P
S
I
N
L
Y
R
-
M
S
P
T
L
Y
R
S
A
L
P
-
N
A
Q
S
V
A
L
L
-
Q
R
L
Q
V
K
T
V
V
S
F
I
K
D
---
D
---
D
R
A
--------------
W
L
G
Q
A
P
V
R
V
L
S
L
P
T
--
H
A
D
R
--
V
--
D
-----
D
-
A
E
V
L
S
V
L
-
R
---
Q
L
Q
A
A
------
E
R
-
E
G
P
V
L
M
H
C
K
H
G
N
N
R
T
G
L
F
A
A
M
Y
R
I
V
V
Q
G
W
D
K
Q
A
A
L
E
E
M
Q
H
G
G
F
G
D
E
D
D
M
R
D
A
S
-
A
Y
V
R
G
A
D
V
D
G
L
R
L
A
M
--------------------------
2
PsiBlast_PDB
71.07
31%
-136
- C1 -
-
4R0S
-
?
A:
[43-168]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
P
S
I
N
L
Y
R
-
M
S
P
T
L
Y
R
S
A
L
P
-
N
A
Q
S
V
A
L
L
-
Q
R
L
Q
V
K
T
V
V
S
F
-
I
K
---
D
---
D
D
R
----------
A
---
W
L
G
Q
A
P
V
R
V
L
S
L
P
T
--
H
A
D
R
--
V
--
D
-----
D
-
A
E
V
L
S
V
L
-
R
---
Q
L
Q
A
A
-----
E
R
E
-
G
P
-
V
L
M
H
C
K
H
G
N
N
R
T
G
L
F
A
A
M
Y
R
I
V
V
Q
G
W
D
K
Q
A
A
L
E
E
M
Q
H
G
G
F
G
---------------------------------------------------
21
PsiBlast_CBE
69.55
31%
-136
- C1 -
-
4R0S
1
?
B:
[43-168]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
P
S
I
N
L
Y
R
-
M
S
P
T
L
Y
R
S
A
L
P
-
N
A
Q
S
V
A
L
L
-
Q
R
L
Q
V
K
T
V
V
S
F
-
I
K
---
D
---
D
D
R
----------
A
---
W
L
G
Q
A
P
V
R
V
L
S
L
P
T
--
H
A
D
R
--
V
--
D
-----
D
-
A
E
V
L
S
V
L
-
R
---
Q
L
Q
A
A
-----
E
R
E
-
G
P
-
V
L
M
H
C
K
H
G
N
N
R
T
G
L
F
A
A
M
Y
R
I
V
V
Q
G
W
D
K
Q
A
A
L
E
E
M
Q
H
G
G
F
G
---------------------------------------------------
3
PsiBlast_PDB
66.91
30%
-130
- C1 -
-
4R0T
1
?
B:
[43-168]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
P
S
I
N
L
Y
R
-
M
S
P
T
L
Y
R
S
A
L
P
-
N
A
Q
S
V
A
L
L
-
Q
R
L
Q
V
K
T
V
V
S
F
-
I
K
---
D
---
D
D
R
----------
A
---
W
L
G
Q
A
P
V
R
V
L
S
L
P
T
--
H
A
D
R
--
V
--
D
-----
D
-
A
E
V
L
S
V
L
-
R
---
Q
L
Q
A
A
-----
E
R
E
-
G
P
-
V
L
M
H
S
K
H
G
N
N
R
T
G
L
F
A
A
M
Y
R
I
V
V
Q
G
W
D
K
Q
A
A
L
E
E
M
Q
H
G
G
F
G
---------------------------------------------------
34
HHSearch
63.42
25%
-79
- C1 -
-
2M3V
-
?
A:
[30-191]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
E
T
A
A
P
R
S
P
A
W
---------
A
Q
A
V
D
P
S
I
N
L
Y
R
-
M
S
P
T
L
Y
R
S
A
L
P
-
N
A
Q
S
V
A
L
L
-
Q
R
L
Q
V
K
T
V
V
S
F
I
K
D
---
D
---
D
R
A
--------------
W
L
G
Q
A
P
V
R
V
V
S
L
P
T
--
H
A
D
R
--
V
--
D
-----
D
-
A
E
V
L
S
V
L
-
R
---
Q
L
Q
A
A
------
E
R
-
E
G
P
V
L
M
H
C
K
H
G
N
N
R
T
G
L
F
A
A
M
Y
R
I
V
V
Q
G
W
D
K
Q
A
A
L
E
E
M
Q
R
G
G
F
G
D
E
D
D
M
R
D
A
S
-
A
Y
V
R
G
A
D
V
D
G
L
R
L
A
---------------------------
1
PsiBlast_PDB
60.39
31%
-112
- C1 -
-
2M3V
-
?
A:
[43-168]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
P
S
I
N
L
Y
R
-
M
S
P
T
L
Y
R
S
A
L
P
-
N
A
Q
S
V
A
L
L
-
Q
R
L
Q
V
K
T
V
V
S
F
-
I
K
---
D
---
D
D
R
----------
A
---
W
L
G
Q
A
P
V
R
V
V
S
L
P
T
--
H
A
D
R
--
V
--
D
-----
D
-
A
E
V
L
S
V
L
-
R
---
Q
L
Q
A
A
-----
E
R
E
-
G
P
-
V
L
M
H
C
K
H
G
N
N
R
T
G
L
F
A
A
M
Y
R
I
V
V
Q
G
W
D
K
Q
A
A
L
E
E
M
Q
R
G
G
F
G
---------------------------------------------------
35
HHSearch
55.35
22%
-21
- C1 -
-
2Q47
-
Y1500_ARATH
A:
[2-150]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
P
P
L
N
F
S
M
-
V
D
N
G
I
F
R
S
G
F
P
-
D
S
A
N
F
S
F
L
-
Q
T
L
G
L
R
S
I
I
Y
L
C
P
E
---
P
---
Y
P
E
----------
S
N
L
Q
F
L
K
S
N
G
I
R
L
F
Q
F
G
I
--
E
G
N
K
--
E
--
P
F
V
N
I
P
D
-
H
K
I
R
M
A
L
-
K
---
V
L
L
D
-------
E
K
-
N
H
P
V
L
I
H
C
K
R
G
K
H
R
T
G
C
L
V
G
C
L
R
K
L
-
Q
K
W
C
L
T
S
I
F
D
E
Y
Q
R
F
A
A
A
K
A
R
--
V
S
D
Q
-
R
F
M
E
I
F
D
V
S
--------------------------------
5
PsiBlast_PDB
51.86
27%
-120
- C1 -
-
2Q05
-
DUSP_VACCW
A:
[29-124]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-
V
T
N
N
V
Y
L
G
N
Y
K
-
N
A
M
D
A
P
S
--
S
E
V
K
F
K
Y
V
L
N
L
------
T
---
M
D
K
----------
Y
---
T
L
P
N
S
N
I
N
I
I
H
I
P
L
V
D
D
T
T
T
--
D
--
I
-----
S
-
K
Y
F
D
D
V
T
-
A
---
F
L
S
K
C
-----
D
Q
R
-
N
E
P
V
L
V
H
C
A
A
G
V
N
R
S
G
A
M
I
L
A
Y
-------------------------------------------------------------------------
50
HHSearch
51.19
20%
-78
- C1 -
-
4Y2E
-
D:
[5-128]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
P
V
Q
-
I
L
P
Y
L
Y
L
G
C
A
K
-
D
S
T
N
L
D
V
L
-
G
K
Y
G
I
K
Y
I
L
N
V
T
P
N
---
L
---
P
N
A
--------------
F
E
H
G
G
E
F
T
Y
K
Q
I
P
I
--
S
D
H
W
--
S
Q-
N
L----
S
-
Q
F
F
P
E
A
I
-
S
---
F
I
D
E
A
-----
R
S
K
-
K
C
G
V
L
V
H
S
L
A
G
I
S
R
S
V
T
V
T
V
A
Y
L
M
Q
K
M
N
L
S
L
N
D
A
Y
D
F
V
K
R
K
K
S
N
---------------------------------------------------
53
HHSearch
48.08
16%
-98
- C1 -
-
1YZ4
1
DUS15_HUMAN
A:
[5-127]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
G
M
T
K
-
V
L
P
G
L
Y
L
G
N
F
I
-
D
A
K
D
L
D
Q
L
-
G
R
N
K
I
T
H
I
I
S
I
H
E
S
---
P
---
Q
P
L
-----------------
L
Q
D
I
T
Y
L
R
I
P
V
--
A
D
T
P
EV
P
--
I
-----
K
-
K
H
F
K
E
C
I
-
N
---
F
I
H
C
C
-----
R
L
N
-
G
G
N
C
L
V
H
S
F
A
G
I
S
R
S
T
T
I
V
T
A
Y
V
M
T
V
T
G
L
G
W
R
D
V
L
E
A
I
K
A
T
R
P
I
---------------------------------------------------
11
PsiBlast_PDB
47.93
26%
-101
- C1 -
-
3CM3
1
DUSP_VACCW
A:
[34-129]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-
V
T
N
N
V
Y
L
G
N
Y
K
-
N
A
M
D
A
P
S
--
S
E
V
K
F
K
Y
V
L
N
L
------
T
---
M
D
K
----------
Y
---
T
L
P
N
S
N
I
N
I
I
H
I
P
L
VD
D
T
T
T
--
D
--
I
-----
S
-
K
Y
F
D
D
V
T
-
A
---
F
L
S
K
C
-----
D
Q
R
-
N
E
P
V
L
V
H
S
A
A
G
V
N
R
S
G
A
M
I
L
A
Y
-------------------------------------------------------------------------
10
PsiBlast_PDB
47.53
26%
-104
- C1 -
-
2RF6
-
DUSP_VACCW
A:
[34-129]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-
V
T
N
N
V
Y
L
G
N
Y
K
-
N
A
M
D
A
P
S
--
S
E
V
K
F
K
Y
V
L
N
L
------
T
---
M
D
K
----------
Y
---
T
L
P
N
S
N
I
N
I
I
H
I
P
L
VD
D
T
T
T
--
D
--
I
-----
S
-
K
Y
F
D
D
V
T
-
A
---
F
L
S
K
C
-----
D
Q
R
-
N
E
P
V
L
V
H
S
A
A
G
V
N
R
S
G
A
M
I
L
A
Y
-------------------------------------------------------------------------
13
PsiBlast_PDB
46.92
25%
20
- C1 -
-
2Q47
-
Y1500_ARATH
A:
[7-130]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
F
S
M
-
V
D
N
G
I
F
R
S
G
F
P
-
D
S
A
N
F
S
F
L
-
Q
T
L
G
L
R
S
I
I
Y
L
C
P
E
---
P
YP
E
S
N
L
----------
Q
---
F
L
K
S
N
G
I
R
L
F
Q
F
G
I
--
E
G
-------
N
-----
K
-
E
P
F
V
N
I
P
D
H
---
K
I
R
M
A
L
K
V
L
L
D
E
K
-
N
H
P
V
L
I
H
C
K
R
G
K
H
R
T
G
C
L
V
G
C
L
R
K
L
-
Q
K
W
C
L
T
S
I
F
D
E
Y
Q
R
-------------------------------------------------------
52
HHSearch
46.76
17%
-25
- C1 -
-
4KYR
3
LSF2_ARATH
A:
[15-155]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
M
N
Y
T
L
-
I
R
D
E
L
I
V
G
S
Q
P
Q
K
P
E
D
I
D
H
L
K
Q
E
Q
N
V
A
Y
I
L
N
L
Q
Q
D
---
K
---
D
I
E
Y
W
GID
L
D
S
I
V
R
---
R
C
K
E
L
G
I
R
H
M
R
R
P
A
--
K
D
F
D
P
-
L
--
S
-----
L
R
S
Q
L
P
K
A
V
-
S
---
S
L
E
W
A
-----
V
S
E
G
K
G
R
V
Y
V
H
S
S
A
G
L
G
R
A
P
G
V
S
I
A
Y
M
Y
W
F
C
D
M
N
L
N
T
A
Y
D
T
L
V
S
K
R
P
C
---------------------------------------------------
4
PsiBlast_PDB
46.33
27%
-126
- C1 -
-
2P4D
-
DUSP_VAR67
A:
[29-124]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-
V
T
N
N
V
Y
L
G
N
Y
K
-
N
A
M
N
A
P
S
--
S
E
V
K
F
K
Y
V
L
N
L
------
T
---
M
D
K
----------
Y
---
T
L
P
N
S
N
I
N
I
I
H
I
P
L
V
D
D
T
T
T
--
D
--
I
-----
S
-
K
Y
F
D
D
V
T
-
A
---
F
L
S
K
C
-----
D
Q
R
-
N
E
P
V
L
V
H
C
V
A
G
V
N
R
S
G
A
M
I
L
A
Y
-------------------------------------------------------------------------
12
PsiBlast_PDB
46.09
25%
16
- C1 -
-
1XRI
-
Y1500_ARATH
A:
[7-130]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
F
S
M
-
V
D
N
G
I
F
R
S
G
F
P
-
D
S
A
N
F
S
F
L
-
Q
T
L
G
L
R
S
I
I
Y
L
C
P
E
---
P
YP
E
S
N
L
----------
Q
---
F
L
K
S
N
G
I
R
L
F
Q
F
G
I
--
E
G
-------
N
-----
K
-
E
P
F
V
N
I
P
D
H
---
K
I
R
M
A
L
K
V
L
L
D
E
K
-
N
H
P
V
L
I
H
C
K
R
G
K
H
R
T
G
C
L
V
G
C
L
R
K
L
-
Q
K
W
C
L
T
S
I
F
D
E
Y
Q
R
-------------------------------------------------------
24
Fugue
45.11
22%
32
- C1 -
-
1XRI
-
Y1500_ARATH
A:
[1-151]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
I
P
P
L
N
--------------------
F
S
M
V
D
N
G
I
F
R
S
G
F
P
-
D
S
A
N
F
S
F
L
-
Q
T
L
G
L
R
S
I
I
Y
L
C
P
E
PYP
E
---
S
N
L
----------
Q
---
F
L
K
S
N
G
I
R
L
F
Q
F
G
I
--
E
G
N
K
--
E
--
P
-----
F
-
V
N
I
P
D
H
K
-
I
R
M
A
L
K
V
L
L
-----
D
E
K
-
N
H
P
V
L
I
H
C
K
R
G
K
H
R
T
G
C
L
V
G
C
L
R
K
L
-
Q
K
W
C
L
T
S
I
F
D
E
Y
Q
R
F
A
A
A
K
A
R
V
S
D
Q
R
F
M
E
I
F
D
V
S
S
----------------------------------
36
HHSearch
44.44
16%
-73
* C1 *
-
2G6Z
-
DUS5_HUMAN
A:
[4-127]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
P
V
E
-
I
L
P
F
L
Y
L
G
S
A
Y
-
H
A
S
K
C
E
F
L
-
A
N
L
H
I
T
A
L
L
N
V
S
R
R
---
T
---
S
E
A
----------------
C
M
T
H
L
H
Y
K
W
I
P
V
--
E
D
S
H
--
T
AD
I
-----
S
-
S
H
F
Q
E
A
I
-
D
---
F
I
D
C
V
-----
R
E
K
-
G
G
K
V
L
V
H
S
E
A
G
I
S
R
S
P
T
I
C
M
A
Y
L
M
K
T
K
Q
F
R
L
K
E
A
F
D
Y
I
K
Q
R
R
S
M
V
--------------------------------------------------
32
Fugue
44.34
13%
-7
- C1 -
-
1OHE
1
CC14B_HUMAN
A:
[4-341]
RDPQD
D
V
Y
L
D
ITDR
L
C
F
A
I
L
YSRPKSASN
V
H
Y
F
S
IDNELEYENFYADFGPLN
L
A
M
V
Y
R
Y
C
C
K
I
N
K
K
L
K
SITMLR
K
K
I
V
H
F
T
G
SD
Q
R
K
Q
A
N
A
A
F
L
V
G
C
Y
M
V
I
YLGRT
P
E
E
A
Y
R
I
L
I
FGE
T
S
Y
I
P
F
RDAAYGSCN
F
Y
I
T
L
L
D
C
F
H
A
V
K
K
A
M
Q
Y
G
F
L
N
F
N
S
F
N
L
D
E
Y
E
H
Y
E
K
A
E
NGDLNWIIP
D
R
F
I
A
F
C
G
P
H
S
R
-
A
R
L
E
S
G
Y
H
Q
H
S
-
P
E
T
Y
I
Q
Y
F
-
K
N
H
N
V
T
T
I
I
R
L
N
K
R
---
M
---
Y
D
A
----------
K
---
R
F
T
D
A
G
F
D
H
H
D
L
F
F
--
A
D
G
------
S
-----
T
-
P
T
D
A
I
V
K
-
E
---
F
L
D
I
C
-----
E
N
A
-
E
G
A
I
A
V
H
S
K
A
G
L
G
R
T
G
T
L
I
A
C
Y
I
M
K
H
Y
R
M
T
A
A
E
T
I
A
W
V
R
I
C
R
P
G
S
-
V
I
G
P
Q
Q
Q
-
F
L
V
M
K
Q
T
N
L
W
L
E
G
D
Y
F
R
Q
K
L
K--------------------