@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VRK6: (2017-12-03 )
MPKVHLMVRFVQVVTVLFVLLGCFVIFLYSPFYSKLIVAGLNYFVPVDVNEVAAESQRKAALSEHDNLEPGSNLWIARQAYLKLTEDALRENKTADLGYIQENYKALQQIILLEEKEQELQEEKETTAVGVPLVAKNSEIDAADEASSPIDAALSISSSENKALTEQYTEFLARKPVVPEHQKAASEPEQKVEYVRKNPLPAQPKKLSEPYAIVVLGGGLTLDKNGKDIVVNSYTRLRLEKTLEVEKKNHLPIVLSGVEAPYMQAWLKARGVDAKLLEKRSMNTCENTRFSSLLLQKKGGAPTVMLVTDEYHMPRTRRLFALNGIETIPVTAPMPTPLTRWQPSTQNYDHSRRANYELLATIRDMLFGSSDCREVP
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.--..----....-210.......220...-------------...----------.230....-------------...240.......250......---------------------------.260.......-270.--..--....280.......290.......-300.......310.......320....-...330.......340.......350.......360.......370....
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MP
K
V
H
L
M
V
R
F
V
Q
V
V
T
V
L
F
V
L
L
G
C
F
V
I
F
LY
S
P
F
Y
S
K
L
I
V
AGL
N
Y
F
V
PV
D
V
N
E
V
A
A
E
S
Q
R
K
A
ALSEHDNLEPGSN
L
W
I
A
R
Q
A
Y
L
K
L
T
E
D
A
L
RENKTA
D
L
G
Y
I
Q
E
N
Y
K
A
L
Q
Q
I
I
L
L
E
E
K
E
Q
E
L
Q
E
E
KETTAVGV
P
L
V
AKNSEIDAADEASSPI
D
A
A
L
S
ISSSE
N
K
A
L
T
E
Q
Y
T
E
F
L
ARKPVVP
E
H
Q
K
AASE
P
E
Q
K
V
E
Y
V
RKNPLPAQ--PK----KLSE-
P
Y
A
I
V
V
LGG
G
L
T
LDKN-------------G
K
D
----------
I
V
VNS
Y
T
R
-------------
L
R
L
E
K
T
L
EVEKKNH
L
P
I
V
LSGV---------------------------E
A
P
Y
M
Q
A
W
L
K
A-RGV
D
--
A
K
--
L
L
E
K
RSMNTCEN
T
R
F
S
S
L
L
L
QKKG-GA
P
T
V
M
L
V
TDEYHMPR
T
R
R
L
F
A
LNG
I
E
-
T
IPVTAPMPTPLTRWQPSTQNY
D
H
S
R
RA
N
Y
E
L
L
A
T
I
R
D
M
LFGSSDCREVP
1
PsiBlast_PDB
61.96
34%
-99
- C3 -
-
4Y9O
-
?
A:
[190-259]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
I
D
T
L
S
G
-------------
H
I
L
D
S
I
V
E
L
S
A
K
L
D
L
D
I
V
A
E
G
V
---------------------------
E
T
P
E
Q
R
D
Y
L
A
A
-
R
G
V
D
Y
L
Q
G
--
Y
L
I
G
R
P
M
P
L
--
E
S
L
L
S
S
L
T
V
Q
E
Q
--------------------------------------------------------------------------------
4
PsiBlast_PDB
61.82
34%
-102
- C3 -
-
4Y9N
-
?
A:
[190-260]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
I
D
T
L
S
G
-------------
H
I
L
D
S
I
V
E
L
S
A
K
L
D
L
D
I
V
A
E
G
V
---------------------------
E
T
P
E
Q
R
D
Y
L
A
A
-
R
G
V
D
Y
L
Q
G
--
Y
L
I
G
R
P
M
P
L
--
E
S
L
L
S
S
L
T
V
Q
E
G
Q
-------------------------------------------------------------------------------
3
PsiBlast_PDB
61.49
34%
-92
- C3 -
-
4Y9M
-
?
A:
[190-260]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
I
D
T
L
S
G
-------------
H
I
L
D
S
I
V
E
L
S
A
K
L
D
L
D
I
V
A
E
G
V
---------------------------
E
T
P
E
Q
R
D
Y
L
A
A
-
R
G
V
D
Y
L
Q
G
--
Y
L
I
G
R
P
M
P
L
--
E
S
L
L
S
S
L
T
V
Q
E
G
Q
-------------------------------------------------------------------------------
24
HHSearch
57.45
16%
25
- C3 -
-
3CA8
6
YDCF_ECOLI
A:
[12-203]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
I
D
A
I
N
V
I
G
Q
W
L
A
Q
D
D
FS
G
E
----
V
P
Y
Q
-
A
D
C
V
I
L
A
G
N
A
V
M
---------------------------------------------------
P
T
I
D
A
A
C
K
I
A
R
D
Q
Q
I
P
L
L
I
S
G
G
I
GHS
T
T
F
L
Y
S
A
I
A
Q
HPHYNTIRTTGRA
E
A
T
I
L
A
D
I
A
H
Q
F
W
H
I
P
--
H
E
KI
W
I
E
D
Q
S
T
N
C
G
E
N
A
R
F
S
I
A
L
L
N
Q
A
V
E
R
V
H
T
A
I
V
V
Q
D
P
T
M
Q
R
R
T
M
A
T
F
R
R
M
T
G
D
N
P
D
A
-
P
R
W
L
--
S
Y
P
G
F
V
P
Q
L
G
N
N
A
D
S
V
I
F
I
N
Q
L
Q
G
L
W
--------------
25
HHSearch
56.80
16%
24
- C3 -
-
3CA8
7
YDCF_ECOLI
B:
[12-203]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
I
D
A
I
N
V
I
G
Q
W
L
A
Q
D
D
FS
G
E
----
V
P
Y
Q
-
A
D
C
V
I
L
A
G
N
A
V
M
---------------------------------------------------
P
T
I
D
A
A
C
K
I
A
R
D
Q
Q
I
P
L
L
I
S
G
G
IGHSTTFLYSAIAQHPHYNTIRTTGRA
E
A
T
I
L
A
D
I
A
H
Q
F
W
H
I
P
--
H
E
KI
W
I
E
D
Q
S
T
N
C
G
E
N
A
R
F
S
I
A
L
L
N
Q
A
V
E
R
V
H
T
A
I
V
V
Q
D
P
T
M
Q
R
R
T
M
A
T
F
R
R
M
T
G
D
N
P
D
A
-
P
R
W
L
--
S
Y
P
G
F
V
P
Q
L
G
N
N
A
D
S
V
I
F
I
N
Q
L
Q
G
L
W
--------------
14
PsiBlast_PDB
55.95
27%
27
- C3 -
-
5K30
3
?
A:
[139-271]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
E
I
R
A
A
M
R
P
E
T
K
V
V
Y
I
E
T
---
P
A
N
--
P
T
LSLV
D
I
E
T
-
V
A
G
I
A
H
Q
Q
G
A
L
L
V
V
D
N
TFMSPYCQQPLQL
G
A
D
----------
I
V
V
H
S
V
T
K
YINGHGD
V
I
G
G
I
I
V
G
K
Q
E
F
I
D
Q
A
R
F
V
G
L
K
D
I
T
G
G
----------------------------
M
S
P
F
-
N
A
W
L
T
L
-
R
G
V
----
K
--
T
L
G
I
R
M
E
R
H
C
E
N
-------------------------------------------------------------------------------------------
12
PsiBlast_PDB
55.77
27%
45
- C3 -
-
4HF8
4
?
A:
[139-271]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
E
I
R
A
A
M
R
P
E
T
K
V
V
Y
I
E
T
---
P
A
N
--
P
T
LSLV
D
I
E
T
-
V
A
G
I
A
H
Q
Q
G
A
L
L
V
V
D
N
TFMSPYCQQPLQL
G
A
D
----------
I
V
V
H
S
V
T
K
YINGHGD
V
I
G
G
I
I
V
G
K
Q
E
F
I
D
Q
A
R
F
V
G
L
K
D
I
T
G
G
C
---------------------------
M
S
P
F
-
N
A
W
L
T
L
-
R
G
V
----
K
--
T
L
G
I
R
M
E
R
H
C
E
N
-------------------------------------------------------------------------------------------
15
PsiBlast_PDB
55.64
27%
39
- C3 -
-
3MKJ
1
?
A:
[139-271]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
E
I
R
A
A
M
R
P
E
T
K
V
V
Y
I
E
T
---
P
A
N
--
P
T
LSLV
D
I
E
T
-
V
A
G
I
A
H
Q
Q
G
A
L
L
V
V
D
N
TFMSPYCQQPLQL
G
A
D
----------
I
V
V
H
S
V
T
K
YINGHG
D
V
I
G
G
I
I
V
G
K
Q
E
F
I
D
Q
A
R
F
V
G
L
K
D
I
T
G
G
C
---------------------------
M
S
P
F
-
N
A
W
L
T
L
-
R
G
V
----
K
--
T
L
G
I
R
M
E
R
H
C
E
N
-------------------------------------------------------------------------------------------
11
PsiBlast_PDB
55.24
27%
46
- C3 -
-
4OMA
4
?
A:
[139-271]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
E
I
R
A
A
M
R
P
E
T
K
V
V
Y
I
E
T
---
P
A
N
--
P
T
LSLV
D
I
E
T
-
V
A
G
I
A
H
Q
Q
G
A
L
L
V
V
D
N
TFMSPYCQQPLQL
G
A
D
----------
I
V
V
H
S
V
T
K
YINGHGD
V
I
G
G
I
I
V
G
K
Q
E
F
I
D
Q
A
R
F
V
G
L
K
D
I
T
G
G
C
---------------------------
M
S
P
F
-
N
A
W
L
T
L
-
R
G
V
----
K
--
T
L
G
I
R
M
E
R
H
C
E
N
-------------------------------------------------------------------------------------------
2
PsiBlast_PDB
55.23
34%
-104
- C3 -
-
4Y8E
-
?
A:
[190-261]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
I
D
T
L
S
G
-------------
H
I
L
D
S
I
V
E
L
S
A
K
L
D
L
D
I
V
A
E
G
V
---------------------------
E
T
P
E
Q
R
D
Y
L
A
A
-
R
G
V
D
Y
L
Q
G
--
Y
L
I
G
R
P
M
P
L
--
E
S
L
L
S
S
L
T
V
Q
E
G
Q
-
G
-----------------------------------------------------------------------------
9
PsiBlast_PDB
55.01
27%
39
- C3 -
-
5E4Z
3
?
A:
[139-271]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
E
I
R
A
A
M
R
P
E
T
K
V
V
Y
I
E
T
---
P
A
N
--
P
T
LSLV
D
I
E
T
-
V
A
G
I
A
H
Q
Q
G
A
L
L
V
V
D
N
TFMSPYCQQPLQL
G
A
D
----------
I
V
V
H
S
V
T
K
YINGHGD
V
I
G
G
I
I
V
G
K
Q
E
F
I
D
Q
A
R
F
V
G
L
K
D
I
T
G
G
C
---------------------------
M
S
P
F
-
N
A
W
L
T
L
-
R
G
V
----
K
--
T
L
G
I
R
M
E
R
H
C
E
N
-------------------------------------------------------------------------------------------
13
PsiBlast_PDB
54.88
27%
41
- C3 -
-
5D5S
2
?
A:
[139-271]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
E
I
R
A
A
M
R
P
E
T
K
V
V
Y
I
E
T
---
P
A
N
--
P
T
LSLV
D
I
E
T
-
V
A
G
I
A
H
Q
Q
G
A
L
L
V
V
D
N
TFMSPYCQQPLQL
G
A
D
----------
I
V
V
H
S
V
T
K
YINGHG
D
V
I
G
G
I
I
V
G
K
Q
E
F
I
D
Q
A
R
F
V
G
L
K
D
I
T
G
G
C
---------------------------
M
S
P
F
-
N
A
W
L
T
L
-
R
G
V
----
K
--
T
L
G
I
R
M
E
R
H
C
E
N
-------------------------------------------------------------------------------------------
10
PsiBlast_PDB
54.59
27%
43
- C3 -
-
5M3Z
2
?
A:
[139-271]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
E
I
R
A
A
M
R
P
E
T
K
V
V
Y
I
E
T
---
P
A
N
--
P
T
LSLV
D
I
E
T
-
V
A
G
I
A
H
Q
Q
G
A
L
L
V
V
D
N
TFMSPYCQQPLQL
G
A
D
----------
I
V
V
H
S
V
T
K
YINGHGD
V
I
G
G
I
I
V
G
K
Q
E
F
I
D
Q
A
R
F
V
G
L
K
D
I
T
G
G
C
---------------------------
M
S
P
F
-
N
A
W
L
T
L
-
R
G
V
----
K
--
T
L
G
I
R
M
E
R
H
C
E
N
-------------------------------------------------------------------------------------------
6
PsiBlast_PDB
54.14
37%
-208
- C3 -
-
5MF5
1
?
A:
[186-230]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
I
D
T
L
S
G
-------------
H
I
L
D
S
I
V
E
L
S
A
K
L
D
L
D
I
V
A
E
G
V
---------------------------
E
T
P
E
Q
R
D
Y
L
A
A
-
R
G
V
D
-------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
53.69
34%
-102
- C3 -
-
4Y9P
2
?
B:
[190-261]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
I
D
T
L
S
G
-------------
H
I
L
D
S
I
V
E
L
S
A
K
L
D
L
D
I
V
A
E
G
V
---------------------------
E
T
P
E
Q
R
D
Y
L
A
A
-
R
G
V
D
Y
L
Q
G
--
Y
L
I
G
R
P
M
P
L
--
E
S
L
L
S
S
L
T
V
Q
E
G
Q
-
G
-----------------------------------------------------------------------------
5
PsiBlast_PDB
53.62
34%
-106
- C3 -
-
4Y9P
2
?
A:
[190-261]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
I
D
T
L
S
G
-------------
H
I
L
D
S
I
V
E
L
S
A
K
L
D
L
D
I
V
A
E
G
V
---------------------------
E
T
P
E
Q
R
D
Y
L
A
A
-
R
G
V
D
Y
L
Q
G
--
Y
L
I
G
R
P
M
P
L
--
E
S
L
L
S
S
L
T
V
Q
E
G
Q
-
G
-----------------------------------------------------------------------------
8
PsiBlast_PDB
52.72
37%
-216
- C3 -
-
5MFU
1
?
A:
[186-230]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
I
D
T
L
S
G
-------------
H
I
L
D
S
I
V
E
L
S
A
K
L
D
L
D
I
V
A
E
G
V
---------------------------
E
T
P
E
Q
R
D
Y
L
A
A
-
R
G
V
D
-------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
51.01
37%
-177
- C3 -
-
5MKG
1
?
B:
[185-229]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
I
D
T
L
S
G
-------------
H
I
L
D
S
I
V
E
L
S
A
K
L
D
L
D
I
V
A
E
G
V
---------------------------
E
T
P
E
Q
R
D
Y
L
A
A
-
R
G
V
D
-------------------------------------------------------------------------------------------------------------
41
Fugue
50.42
13%
7
- C4 -
-
4TN3
-
ENLYS_BPT4
A:
[27-400]
---
V
D
H
C
A
R
H
G
E
K
L
L
L
F
C
Q
E
D
S
K
V
I
C
W
L
C
K
D
S
Q
E
H
---
R
G
H
H
T
F
L
----
M
E
E
V
A
Q
E
Y
H
V
K
L
Q
T
A
L
E
M
L
R
Q
K
Q
Q
E
A
E
K
L
E
A
D
I
R
E
E
K
A
S
W
K
I
Q
I
D
Y
D
K
T
N
V
S
A
D
F
E
Q
L
R
E
I
L
D
W
E
E
S
N
E
L
Q
N
L
E
K
E
E
E
D
I
L
K
S
L
T
K
S
E
T
E
M
V
Q
Q
T
Q
Y
M
R
E
L
I
S
E
L
E
H
R
L
-
Q
M
M
D
L
L
Q
G
V
D
G
I
I
K
R
I
E
N
M
T
L
F
R
--
A
P
D
L
K
G
M
L
D
M
F
R
D
A
A
A
E
E
S
--
P
V
----
L
L
A
M
N
I
F
E
M
L
R
I
D
E
G
L
R
L
K
I
Y
-------------
K
N
T
EGYYTIGIGH
L
L
T
K
S
P
S
L
-------------
N
A
A
K
S
E
L
D
K
A
I
G
R
N
T
N
G
V
I
T
K
D
---------------------------
E
A
E
K
L
F
N
Q
D
V
D
-
A
A
V
R
--
G
I
--
L
R
N
A
K
L
-----
K
P
V
Y
D
S
L
D
A
V
R
R
A
-
A
L
I
N
M
V
F
Q
M
G
E
T
G
V
A
G
F
T
N
S
L
R
M
L
Q
Q
K
-
R
W
D
E
A
A
V
N
L
A
K
-
S
R
W
Y
N
Q
T
P
N
R
A
K
R
V
I
T
T
F
R
T
---------
G
T
W
D
A
Y
K
N
L
7
PsiBlast_PDB
49.71
37%
-186
- C3 -
-
5MKG
1
?
A:
[186-230]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
I
D
T
L
S
G
-------------
H
I
L
D
S
I
V
E
L
S
A
K
L
D
L
D
I
V
A
E
G
V
---------------------------
E
T
P
E
Q
R
D
Y
L
A
A
-
R
G
V
D
-------------------------------------------------------------------------------------------------------------