@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VRP2: (2017-12-04 )
MSQSTGAPSLFDDGQIGTGGNNNSQSQVKLQAINLIDLLHDGFYLIFLIRNQYVPADPQRFREKILDLLNRFEQQAKKLQFSADDIHDAKYAFCALIDETIVTQQDPSYFNLQNSWLISPLQLSLFGSQLAGYQFFEILEQLRSRGKDRLAALEVFHYCLLLGFQGKYRIESIESLNHLVARVGDEIDYLKGKKVAFSPFSAIPDQIRNIIHRELPFFWILIFLLIFALLTFAGLRFMLNNQNDKALSNYQNVISAPQEQAHITIYLP
Atome Classification :
(17 SA)
----------------------.........10........20........30..--.-.....40.....----...50-.-...----..--..60-----------.........70........80........90........100.......110.......120.......130.....-..140.......150.......160.......170---.--.-...----....180...-....190.......200...-----....210..-------------------.....220.......230.......240.......250.......260......
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------MSQSTGAPSLFDDGQIGTGGNNNSQ
S
Q
V
K
L
Q
A
I
--
N
-
L
I
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L
LHD
G
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----
F
L
I
RN-Q-YVP----A
D
--
P
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------------
F
R
E
K
I
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D
L
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N
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A
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KLQFSADDIH
D
A
K
Y
A
F
C
A
L
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D
E
T
IVTQQDP
S
Y
FNLQN
S
W
LI
S
P
L
Q
L
S
L
F
G
S
QLA
G
Y
Q
F
F
E
-
I
L
E
Q
L
R
SRGK
D
R
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A
A
L
E
V
F
H
Y
C
L
L
LGFQG
K
Y
R
I
-----
E
--
S
-
I
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----
L
N
H
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A
R
VGD-EIDYLKGK
K
V
AFS
P
F
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A
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D
-----
Q
I
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N
I
I
H
RE-------------------L
P
F
F
W
I
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L
I
F
A
L
L
T
F
A
G
L
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F
M
LNNQN
D
K
A
L
S
N
Y
Q
N
V
ISAPQEQ
A
H
I
T
I
YLP
6
HHSearch
73.93
21%
-165
- C1 -
-
3U66
1
?
A:
[7-166]
------------------------------------------------------
S
--
R
-
A
E
Q
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W
L
M
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----
S
Q
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-
Q
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E
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--
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A
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-
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--
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-
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E
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----
R
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A
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A
-
R
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A
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F
A
Q
--------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
70.59
27%
-138
- C1 -
-
3U66
1
?
A:
[12-159]
--------------------------------------------------------------
I
F
Y
P
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----
S
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E
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A
------------
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-------
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-
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Y
R
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-----
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--
D
-
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A
R
V
--------------------------------------------------------------------------------------------------------------
21
Fugue
64.73
19%
-21
* C2 *
-
5B6D
2
?
A:
[1-325]
TFGT
F
Q
D
A
Y
L
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L
R
D
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Y
H
SPE
F
R
N
A
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-
A
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F
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A
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N
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F
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A
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GSD
R
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D
F
I
-
Q
-
Y
Y
A
----
P
G
--
I
A
A
YSADGRTLRGTA
Y
G
P
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I
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R
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G
G
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N
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A
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-----
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M
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-
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A
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------
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A
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-----
L
--
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-
I
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T
----
Y
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GDN
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E
E
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NA
A
R
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A
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A
LD
L
P
A
Y
W
K
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V
V
A
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A
H
R
Q
V
R
H
-----
E
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A
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A
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P
E
V
Y
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L
A
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P
G
H
F
G
5
HHSearch
64.11
17%
-71
- C1 -
-
4V3I
1
?
A:
[34-193]
----------------------------------------------------
D
N
P
--
N
V
L
I
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A
A
T
P
L
F
G
L
S
----
L
R
V
-------------
N
--
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E
Q
------------
I
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E
I
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A
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A
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C
A
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S
V
M
G
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E
----
W
G
A
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A
E
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F
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-
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L
A
F
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C
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K
Y
R
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-----
M
EG
G
-
Q
A
E
----
R
E
K
V
I
S
R
L
H
Q
-
L
L
S
S
L
E
-----------------------------------------------------------------------------------------------------
16
Fugue
60.35
17%
-65
- C1 -
-
4ACK
3
?
A:
[1-155]
-----------------------------------------------------------
M
K
D
F
K
E
I
E
I
I
L
D
----
I
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T
T
-
R
-
E
I
I
END
N
E
K
--
I
S
Y
------------
H
R
N
N
I
R
K
S
I
-
F
F
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E
E
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I
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F
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L
L
A
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M
L
L
R
E
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S
----
A
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E
Y
Y
D
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D
G
G
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Y
V
F
E
-
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G
K
Y
Y
D
NIYN
H
S
--
F
-
L
A
Y
----
K
K
E
I
D
K
H
---------------------------------------------------------------------------------------------------------------
23
Fugue
60.18
16%
-
- C2 -
-
4OMV
-
?
A:
[0-202]
----------------------------
A
M
L
L
Y
T
K
K
D
------------------------
D
I
Y
S
D
I
V
R
M
I
----
L
L
I
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G
-
A
-
N
A
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----
I
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DV
S
K
E
------------
E
N
S
K
H
L
E
E
L
N
I
I
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N
I
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--
A
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A
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L
Y
P
F
P
P
--------------------------
M
F
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-
V
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P
K
Q
R
A
N
A
R
I
L
L
E
Y
V
N
K
T
F
------------------------------
L
Q
N
I
I
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L
Q
S
P
-
D
L
D
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A
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E
I
K
M
L
M
Q
R
D
I
I
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-----
T
Y
K
K
I
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S
E
R
-------------------
A
Q
N
I
N
V
L
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F
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Y
Y
F
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N
F
I
K
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I
K
A
---
7
HHSearch
55.95
16%
-33
- C1 -
-
4ACK
5
?
B:
[12-156]
-----------------------------------------------------------------
D
I
I
K
T
T
----
R
E
I
I
E
-
D
D
N
D
N
----
E
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--
I
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Y
------------
H
R
N
N
I
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I
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Q
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-
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----
E
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L
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Y
Y
D
R
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G
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V
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I
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P
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C
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Y
G
K
Y
Y
D
-----
N
--
I
Y
N
H
S
----
F
L
A
Y
K
K
E
I
D
K
-
H
I
---------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
51.93
19%
-167
- C1 -
-
4V3I
1
?
A:
[94-193]
------------------------------------------------------------------------------------------------------------------------------------------
R
Y
I
L
C
A
F
L
D
E
S
V
M
G
T
E
----
W
G
A
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A
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F
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A
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G
K
Y
R
V
----------
M
E
G
----
G
Q
A
E
R
E
K
V
I
S
-
R
L
H
Q
L
L
S
S
L
E
-------------------------------------------------------------------------------------------------
10
HHSearch
41.04
8%
-333
- C1 -
-
5B66
-
PSBJ_THEVL
J:
[6-17]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
-------------------
I
P
L
W
I
V
A
T
V
A
--------------------------------------------
12
HHSearch
38.82
14%
-166
- C1 -
-
5J0K
-
?
B:
[24-74]
-----------------------------------------------------------
L
A
K
R
L
K
E
L
L
R
E
L
----
E
R
L
Q
R
E
G
-
S
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D
----
E
D
--
V
R
E
------------
L
L
R
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I
K
E
L
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E
E
I
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A
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K
Y
L
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E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
37.97
14%
-134
- C1 -
-
5J0K
-
?
A:
[24-74]
-----------------------------------------------------------
L
A
K
R
L
K
E
L
L
R
E
L
----
E
R
L
Q
R
E
G
-
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----
E
D
--
V
R
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------------
L
L
R
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E
L
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E
E
I
E
K
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A
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E
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K
Y
L
V
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
34.75
27%
-75
- C1 -
-
3OET
1
PDXB_SALTY
A:
[123-203]
-----------------------------------
G
I
V
G
V
G
-
N
V
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S
R
L
Q
T
R
L
E
A
L
--
G
-
I
R
T
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L
C
D
-------------------
P
----
P
R
--
A
A
R
------------
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D
E
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R
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G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
31.86
8%
-116
- C1 -
-
2FZ0
-
NYV1_YEAST
A:
[106-141]
-------------------------------------------------------------------
I
R
I
L
----
S
G
L
Q
E
-
Y
-
E
S
N
----
A
T
--
N
E
L
------------
L
S
S
H
V
G
Q
I
L
D
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F
H
E
E
L
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E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
30.64
23%
-7
- C1 -
-
4B7Y
-
MSL1_HUMAN
A:
[6-43]
-----------------------------------------------------------------------------------
G
A
S
----
S
Q
--
A
A
C
------------
L
K
Q
I
L
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L
Q
L
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------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
21.87
26%
135
- C1 -
-
4NM3
-
B:
[5-23]
------------------------------------------------------------------------------------------
V
E
--
P
Q
K
------------
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A
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E
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R
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A
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R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
21.23
16%
176
* C1 *
-
1ZXA
-
KGP1_HUMAN
A:
[9-44]
-------------------------------------------------------------------------------------
A
----
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--
L
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L
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K
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E
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E
E
E
I
Q
E
L
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R
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L
H
K
C
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
18.42
31%
37
- C1 -
-
1MI1
-
NBEA_HUMAN
A:
[2485-2522]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
Q
W
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D
-
L
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F
H
Y
---
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--
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